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IMP Reference Guide  2.6.2
The Integrative Modeling Platform
pepdock/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.8
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2016 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_pepdock', [dirname(__file__)])
23  except ImportError:
24  import _IMP_pepdock
25  return _IMP_pepdock
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_pepdock', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_pepdock = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_pepdock
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except Exception:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except Exception:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_PEPDOCK_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_PEPDOCK_SwigPyIterator class."""
115 
116  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
117 
118  def __init__(self, *args, **kwargs):
119  raise AttributeError("No constructor defined - class is abstract")
120  __repr__ = _swig_repr
121  __swig_destroy__ = _IMP_pepdock.delete_IMP_PEPDOCK_SwigPyIterator
122  __del__ = lambda self: None
123 
124  def value(self):
125  """value(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
126  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_value(self)
127 
128 
129  def incr(self, n=1):
130  """
131  incr(IMP_PEPDOCK_SwigPyIterator self, size_t n=1) -> IMP_PEPDOCK_SwigPyIterator
132  incr(IMP_PEPDOCK_SwigPyIterator self) -> IMP_PEPDOCK_SwigPyIterator
133  """
134  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_incr(self, n)
135 
136 
137  def decr(self, n=1):
138  """
139  decr(IMP_PEPDOCK_SwigPyIterator self, size_t n=1) -> IMP_PEPDOCK_SwigPyIterator
140  decr(IMP_PEPDOCK_SwigPyIterator self) -> IMP_PEPDOCK_SwigPyIterator
141  """
142  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_decr(self, n)
143 
144 
145  def distance(self, x):
146  """distance(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> ptrdiff_t"""
147  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_distance(self, x)
148 
149 
150  def equal(self, x):
151  """equal(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> bool"""
152  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_equal(self, x)
153 
154 
155  def copy(self):
156  """copy(IMP_PEPDOCK_SwigPyIterator self) -> IMP_PEPDOCK_SwigPyIterator"""
157  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_copy(self)
158 
159 
160  def next(self):
161  """next(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
162  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_next(self)
163 
164 
165  def __next__(self):
166  """__next__(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
167  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___next__(self)
168 
169 
170  def previous(self):
171  """previous(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
172  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_previous(self)
173 
174 
175  def advance(self, n):
176  """advance(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
177  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_advance(self, n)
178 
179 
180  def __eq__(self, x):
181  """__eq__(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> bool"""
182  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___eq__(self, x)
183 
184 
185  def __ne__(self, x):
186  """__ne__(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> bool"""
187  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___ne__(self, x)
188 
189 
190  def __iadd__(self, n):
191  """__iadd__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
192  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___iadd__(self, n)
193 
194 
195  def __isub__(self, n):
196  """__isub__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
197  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___isub__(self, n)
198 
199 
200  def __add__(self, n):
201  """__add__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
202  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___add__(self, n)
203 
204 
205  def __sub__(self, *args):
206  """
207  __sub__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator
208  __sub__(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> ptrdiff_t
209  """
210  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___sub__(self, *args)
211 
212  def __iter__(self):
213  return self
214 IMP_PEPDOCK_SwigPyIterator_swigregister = _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_swigregister
215 IMP_PEPDOCK_SwigPyIterator_swigregister(IMP_PEPDOCK_SwigPyIterator)
216 
217 
218 _value_types=[]
219 _object_types=[]
220 _raii_types=[]
221 _plural_types=[]
222 
223 
224 _IMP_pepdock.IMP_DEBUG_swigconstant(_IMP_pepdock)
225 IMP_DEBUG = _IMP_pepdock.IMP_DEBUG
226 
227 _IMP_pepdock.IMP_RELEASE_swigconstant(_IMP_pepdock)
228 IMP_RELEASE = _IMP_pepdock.IMP_RELEASE
229 
230 _IMP_pepdock.IMP_SILENT_swigconstant(_IMP_pepdock)
231 IMP_SILENT = _IMP_pepdock.IMP_SILENT
232 
233 _IMP_pepdock.IMP_PROGRESS_swigconstant(_IMP_pepdock)
234 IMP_PROGRESS = _IMP_pepdock.IMP_PROGRESS
235 
236 _IMP_pepdock.IMP_TERSE_swigconstant(_IMP_pepdock)
237 IMP_TERSE = _IMP_pepdock.IMP_TERSE
238 
239 _IMP_pepdock.IMP_VERBOSE_swigconstant(_IMP_pepdock)
240 IMP_VERBOSE = _IMP_pepdock.IMP_VERBOSE
241 
242 _IMP_pepdock.IMP_MEMORY_swigconstant(_IMP_pepdock)
243 IMP_MEMORY = _IMP_pepdock.IMP_MEMORY
244 
245 _IMP_pepdock.IMP_NONE_swigconstant(_IMP_pepdock)
246 IMP_NONE = _IMP_pepdock.IMP_NONE
247 
248 _IMP_pepdock.IMP_USAGE_swigconstant(_IMP_pepdock)
249 IMP_USAGE = _IMP_pepdock.IMP_USAGE
250 
251 _IMP_pepdock.IMP_INTERNAL_swigconstant(_IMP_pepdock)
252 IMP_INTERNAL = _IMP_pepdock.IMP_INTERNAL
253 
254 _IMP_pepdock.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_pepdock)
255 IMP_KERNEL_HAS_LOG4CXX = _IMP_pepdock.IMP_KERNEL_HAS_LOG4CXX
256 
257 _IMP_pepdock.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_pepdock)
258 IMP_COMPILER_HAS_AUTO = _IMP_pepdock.IMP_COMPILER_HAS_AUTO
259 
260 _IMP_pepdock.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_pepdock)
261 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_pepdock.IMP_COMPILER_HAS_DEBUG_VECTOR
262 
263 _IMP_pepdock.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_pepdock)
264 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_pepdock.IMP_COMPILER_HAS_UNIQUE_PTR
265 
266 _IMP_pepdock.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
267 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_KERNEL_HAS_BOOST_RANDOM
268 
269 _IMP_pepdock.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_pepdock)
270 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_pepdock.IMP_KERNEL_HAS_GPERFTOOLS
271 
272 _IMP_pepdock.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_pepdock)
273 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_pepdock.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
274 
275 _IMP_pepdock.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_pepdock)
276 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_pepdock.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
277 
278 _IMP_pepdock.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
279 IMPKERNEL_SHOW_WARNINGS = _IMP_pepdock.IMPKERNEL_SHOW_WARNINGS
280 
281 import sys
282 class _DirectorObjects(object):
283  """@internal Simple class to keep references to director objects
284  to prevent premature deletion."""
285  def __init__(self):
286  self._objects = []
287  def register(self, obj):
288  """Take a reference to a director object; will only work for
289  refcounted C++ classes"""
290  if hasattr(obj, 'get_ref_count'):
291  self._objects.append(obj)
292  def cleanup(self):
293  """Only drop our reference and allow cleanup by Python if no other
294  Python references exist (we hold 3 references: one in self._objects,
295  one in x, and one in the argument list for getrefcount) *and* no
296  other C++ references exist (the Python object always holds one)"""
297  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
298  or x.get_ref_count() > 1]
299 # Do in two steps so the references are kept until the end of the
300 # function (deleting references may trigger a fresh call to this method)
301  self._objects = objs
302  def get_object_count(self):
303  """Get number of director objects (useful for testing only)"""
304  return len(self._objects)
305 _director_objects = _DirectorObjects()
306 
307 class _ostream(object):
308  """Proxy of C++ std::ostream class."""
309 
310  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
311 
312  def __init__(self, *args, **kwargs):
313  raise AttributeError("No constructor defined")
314  __repr__ = _swig_repr
315 
316  def write(self, osa_buf):
317  """write(_ostream self, char const * osa_buf)"""
318  return _IMP_pepdock._ostream_write(self, osa_buf)
319 
320 _ostream_swigregister = _IMP_pepdock._ostream_swigregister
321 _ostream_swigregister(_ostream)
322 
323 
324 _IMP_pepdock.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_pepdock)
325 IMP_COMPILER_HAS_OVERRIDE = _IMP_pepdock.IMP_COMPILER_HAS_OVERRIDE
326 
327 _IMP_pepdock.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_pepdock)
328 IMP_COMPILER_HAS_FINAL = _IMP_pepdock.IMP_COMPILER_HAS_FINAL
329 
330 _IMP_pepdock.IMP_HAS_NOEXCEPT_swigconstant(_IMP_pepdock)
331 IMP_HAS_NOEXCEPT = _IMP_pepdock.IMP_HAS_NOEXCEPT
332 import IMP
333 
334 _IMP_pepdock.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
335 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_CGAL_HAS_BOOST_FILESYSTEM
336 
337 _IMP_pepdock.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
338 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
339 
340 _IMP_pepdock.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
341 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_CGAL_HAS_BOOST_RANDOM
342 
343 _IMP_pepdock.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
344 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_CGAL_HAS_BOOST_SYSTEM
345 
346 _IMP_pepdock.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
347 IMPCGAL_SHOW_WARNINGS = _IMP_pepdock.IMPCGAL_SHOW_WARNINGS
348 import IMP.cgal
349 
350 _IMP_pepdock.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
351 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_pepdock.IMP_ALGEBRA_HAS_IMP_CGAL
352 
353 _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
354 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
355 
356 _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
357 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
358 
359 _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
360 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_RANDOM
361 
362 _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
363 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_SYSTEM
364 
365 _IMP_pepdock.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_pepdock)
366 IMP_ALGEBRA_HAS_CGAL = _IMP_pepdock.IMP_ALGEBRA_HAS_CGAL
367 
368 _IMP_pepdock.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_pepdock)
369 IMP_ALGEBRA_HAS_ANN = _IMP_pepdock.IMP_ALGEBRA_HAS_ANN
370 
371 _IMP_pepdock.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
372 IMPALGEBRA_SHOW_WARNINGS = _IMP_pepdock.IMPALGEBRA_SHOW_WARNINGS
373 import IMP.algebra
374 
375 _IMP_pepdock.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
376 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_pepdock.IMP_DISPLAY_HAS_IMP_CGAL
377 
378 _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
379 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
380 
381 _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
382 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
383 
384 _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
385 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_RANDOM
386 
387 _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
388 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_SYSTEM
389 
390 _IMP_pepdock.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_pepdock)
391 IMP_DISPLAY_HAS_CGAL = _IMP_pepdock.IMP_DISPLAY_HAS_CGAL
392 
393 _IMP_pepdock.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
394 IMPDISPLAY_SHOW_WARNINGS = _IMP_pepdock.IMPDISPLAY_SHOW_WARNINGS
395 import IMP.display
396 
397 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
398 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
399 
400 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
401 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
402 
403 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
404 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
405 
406 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
407 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
408 
409 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
410 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
411 
412 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_pepdock)
413 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_CGAL
414 
415 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_pepdock)
416 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_HDF5
417 
418 _IMP_pepdock.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
419 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_pepdock.IMPSCOREFUNCTOR_SHOW_WARNINGS
420 import IMP.score_functor
421 
422 _IMP_pepdock.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
423 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_pepdock.IMP_STATISTICS_HAS_IMP_CGAL
424 
425 _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
426 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
427 
428 _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
429 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
430 
431 _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
432 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_RANDOM
433 
434 _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
435 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_SYSTEM
436 
437 _IMP_pepdock.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_pepdock)
438 IMP_STATISTICS_HAS_CGAL = _IMP_pepdock.IMP_STATISTICS_HAS_CGAL
439 
440 _IMP_pepdock.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
441 IMPSTATISTICS_SHOW_WARNINGS = _IMP_pepdock.IMPSTATISTICS_SHOW_WARNINGS
442 import IMP.statistics
443 
444 _IMP_pepdock.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
445 IMP_CORE_HAS_IMP_CGAL = _IMP_pepdock.IMP_CORE_HAS_IMP_CGAL
446 
447 _IMP_pepdock.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_pepdock)
448 IMP_CORE_HAS_IMP_KERNEL = _IMP_pepdock.IMP_CORE_HAS_IMP_KERNEL
449 
450 _IMP_pepdock.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
451 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_CORE_HAS_BOOST_FILESYSTEM
452 
453 _IMP_pepdock.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
454 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
455 
456 _IMP_pepdock.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
457 IMP_CORE_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_CORE_HAS_BOOST_RANDOM
458 
459 _IMP_pepdock.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
460 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_CORE_HAS_BOOST_SYSTEM
461 
462 _IMP_pepdock.IMP_CORE_HAS_CGAL_swigconstant(_IMP_pepdock)
463 IMP_CORE_HAS_CGAL = _IMP_pepdock.IMP_CORE_HAS_CGAL
464 
465 _IMP_pepdock.IMP_CORE_HAS_HDF5_swigconstant(_IMP_pepdock)
466 IMP_CORE_HAS_HDF5 = _IMP_pepdock.IMP_CORE_HAS_HDF5
467 
468 _IMP_pepdock.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
469 IMPCORE_SHOW_WARNINGS = _IMP_pepdock.IMPCORE_SHOW_WARNINGS
470 import IMP.core
471 
472 _IMP_pepdock.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_pepdock)
473 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_ALGEBRA
474 
475 _IMP_pepdock.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
476 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_CGAL
477 
478 _IMP_pepdock.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_pepdock)
479 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_DISPLAY
480 
481 _IMP_pepdock.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_pepdock)
482 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_KERNEL
483 
484 _IMP_pepdock.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_pepdock)
485 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
486 
487 _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
488 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
489 
490 _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
491 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
492 
493 _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
494 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_RANDOM
495 
496 _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
497 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_SYSTEM
498 
499 _IMP_pepdock.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_pepdock)
500 IMP_CONTAINER_HAS_CGAL = _IMP_pepdock.IMP_CONTAINER_HAS_CGAL
501 
502 _IMP_pepdock.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_pepdock)
503 IMP_CONTAINER_HAS_HDF5 = _IMP_pepdock.IMP_CONTAINER_HAS_HDF5
504 
505 _IMP_pepdock.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
506 IMPCONTAINER_SHOW_WARNINGS = _IMP_pepdock.IMPCONTAINER_SHOW_WARNINGS
507 import IMP.container
508 
509 _IMP_pepdock.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
510 IMP_ATOM_HAS_IMP_CGAL = _IMP_pepdock.IMP_ATOM_HAS_IMP_CGAL
511 
512 _IMP_pepdock.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_pepdock)
513 IMP_ATOM_HAS_IMP_KERNEL = _IMP_pepdock.IMP_ATOM_HAS_IMP_KERNEL
514 
515 _IMP_pepdock.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_pepdock)
516 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
517 
518 _IMP_pepdock.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
519 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
520 
521 _IMP_pepdock.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
522 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_ATOM_HAS_BOOST_RANDOM
523 
524 _IMP_pepdock.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_pepdock)
525 IMP_ATOM_HAS_BOOST_REGEX = _IMP_pepdock.IMP_ATOM_HAS_BOOST_REGEX
526 
527 _IMP_pepdock.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
528 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_ATOM_HAS_BOOST_SYSTEM
529 
530 _IMP_pepdock.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_pepdock)
531 IMP_ATOM_HAS_CGAL = _IMP_pepdock.IMP_ATOM_HAS_CGAL
532 
533 _IMP_pepdock.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_pepdock)
534 IMP_ATOM_HAS_HDF5 = _IMP_pepdock.IMP_ATOM_HAS_HDF5
535 
536 _IMP_pepdock.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
537 IMPATOM_SHOW_WARNINGS = _IMP_pepdock.IMPATOM_SHOW_WARNINGS
538 
539 _IMP_pepdock.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_pepdock)
540 IMP_ATOM_TYPE_INDEX = _IMP_pepdock.IMP_ATOM_TYPE_INDEX
541 
542 _IMP_pepdock.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_pepdock)
543 IMP_RESIDUE_TYPE_INDEX = _IMP_pepdock.IMP_RESIDUE_TYPE_INDEX
544 
545 _IMP_pepdock.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_pepdock)
546 IMP_HIERARCHY_TYPE_INDEX = _IMP_pepdock.IMP_HIERARCHY_TYPE_INDEX
547 import IMP.atom
548 
549 _IMP_pepdock.IMP_RMF_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
550 IMP_RMF_HAS_IMP_CGAL = _IMP_pepdock.IMP_RMF_HAS_IMP_CGAL
551 
552 _IMP_pepdock.IMP_RMF_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_pepdock)
553 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
554 
555 _IMP_pepdock.IMP_RMF_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
556 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_RMF_HAS_BOOST_FILESYSTEM
557 
558 _IMP_pepdock.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
559 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
560 
561 _IMP_pepdock.IMP_RMF_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
562 IMP_RMF_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_RMF_HAS_BOOST_RANDOM
563 
564 _IMP_pepdock.IMP_RMF_HAS_BOOST_REGEX_swigconstant(_IMP_pepdock)
565 IMP_RMF_HAS_BOOST_REGEX = _IMP_pepdock.IMP_RMF_HAS_BOOST_REGEX
566 
567 _IMP_pepdock.IMP_RMF_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
568 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_RMF_HAS_BOOST_SYSTEM
569 
570 _IMP_pepdock.IMP_RMF_HAS_CGAL_swigconstant(_IMP_pepdock)
571 IMP_RMF_HAS_CGAL = _IMP_pepdock.IMP_RMF_HAS_CGAL
572 
573 _IMP_pepdock.IMP_RMF_HAS_HDF5_swigconstant(_IMP_pepdock)
574 IMP_RMF_HAS_HDF5 = _IMP_pepdock.IMP_RMF_HAS_HDF5
575 
576 _IMP_pepdock.IMPRMF_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
577 IMPRMF_SHOW_WARNINGS = _IMP_pepdock.IMPRMF_SHOW_WARNINGS
578 import IMP.rmf
579 import RMF
580 
581 _IMP_pepdock.IMP_DOMINO_HAS_IMP_ATOM_swigconstant(_IMP_pepdock)
582 IMP_DOMINO_HAS_IMP_ATOM = _IMP_pepdock.IMP_DOMINO_HAS_IMP_ATOM
583 
584 _IMP_pepdock.IMP_DOMINO_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
585 IMP_DOMINO_HAS_IMP_CGAL = _IMP_pepdock.IMP_DOMINO_HAS_IMP_CGAL
586 
587 _IMP_pepdock.IMP_DOMINO_HAS_IMP_KERNEL_swigconstant(_IMP_pepdock)
588 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_pepdock.IMP_DOMINO_HAS_IMP_KERNEL
589 
590 _IMP_pepdock.IMP_DOMINO_HAS_IMP_RMF_swigconstant(_IMP_pepdock)
591 IMP_DOMINO_HAS_IMP_RMF = _IMP_pepdock.IMP_DOMINO_HAS_IMP_RMF
592 
593 _IMP_pepdock.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_pepdock)
594 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
595 
596 _IMP_pepdock.IMP_DOMINO_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
597 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_FILESYSTEM
598 
599 _IMP_pepdock.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
600 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
601 
602 _IMP_pepdock.IMP_DOMINO_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
603 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_RANDOM
604 
605 _IMP_pepdock.IMP_DOMINO_HAS_BOOST_REGEX_swigconstant(_IMP_pepdock)
606 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_REGEX
607 
608 _IMP_pepdock.IMP_DOMINO_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
609 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_SYSTEM
610 
611 _IMP_pepdock.IMP_DOMINO_HAS_CGAL_swigconstant(_IMP_pepdock)
612 IMP_DOMINO_HAS_CGAL = _IMP_pepdock.IMP_DOMINO_HAS_CGAL
613 
614 _IMP_pepdock.IMP_DOMINO_HAS_HDF5_swigconstant(_IMP_pepdock)
615 IMP_DOMINO_HAS_HDF5 = _IMP_pepdock.IMP_DOMINO_HAS_HDF5
616 
617 _IMP_pepdock.IMP_DOMINO_HAS_RMF_swigconstant(_IMP_pepdock)
618 IMP_DOMINO_HAS_RMF = _IMP_pepdock.IMP_DOMINO_HAS_RMF
619 
620 _IMP_pepdock.IMPDOMINO_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
621 IMPDOMINO_SHOW_WARNINGS = _IMP_pepdock.IMPDOMINO_SHOW_WARNINGS
622 import RMF_HDF5
623 import IMP.domino
624 
625 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_ALGEBRA_swigconstant(_IMP_pepdock)
626 IMP_PEPDOCK_HAS_IMP_ALGEBRA = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_ALGEBRA
627 
628 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_ATOM_swigconstant(_IMP_pepdock)
629 IMP_PEPDOCK_HAS_IMP_ATOM = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_ATOM
630 
631 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
632 IMP_PEPDOCK_HAS_IMP_CGAL = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_CGAL
633 
634 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_DISPLAY_swigconstant(_IMP_pepdock)
635 IMP_PEPDOCK_HAS_IMP_DISPLAY = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_DISPLAY
636 
637 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_KERNEL_swigconstant(_IMP_pepdock)
638 IMP_PEPDOCK_HAS_IMP_KERNEL = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_KERNEL
639 
640 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_RMF_swigconstant(_IMP_pepdock)
641 IMP_PEPDOCK_HAS_IMP_RMF = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_RMF
642 
643 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_pepdock)
644 IMP_PEPDOCK_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_SCORE_FUNCTOR
645 
646 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_STATISTICS_swigconstant(_IMP_pepdock)
647 IMP_PEPDOCK_HAS_IMP_STATISTICS = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_STATISTICS
648 
649 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
650 IMP_PEPDOCK_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_FILESYSTEM
651 
652 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_GRAPH_swigconstant(_IMP_pepdock)
653 IMP_PEPDOCK_HAS_BOOST_GRAPH = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_GRAPH
654 
655 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
656 IMP_PEPDOCK_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_PROGRAMOPTIONS
657 
658 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
659 IMP_PEPDOCK_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_RANDOM
660 
661 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_REGEX_swigconstant(_IMP_pepdock)
662 IMP_PEPDOCK_HAS_BOOST_REGEX = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_REGEX
663 
664 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
665 IMP_PEPDOCK_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_SYSTEM
666 
667 _IMP_pepdock.IMP_PEPDOCK_HAS_CGAL_swigconstant(_IMP_pepdock)
668 IMP_PEPDOCK_HAS_CGAL = _IMP_pepdock.IMP_PEPDOCK_HAS_CGAL
669 
670 _IMP_pepdock.IMP_PEPDOCK_HAS_HDF5_swigconstant(_IMP_pepdock)
671 IMP_PEPDOCK_HAS_HDF5 = _IMP_pepdock.IMP_PEPDOCK_HAS_HDF5
672 
673 _IMP_pepdock.IMP_PEPDOCK_HAS_RMF_swigconstant(_IMP_pepdock)
674 IMP_PEPDOCK_HAS_RMF = _IMP_pepdock.IMP_PEPDOCK_HAS_RMF
675 
676 _IMP_pepdock.IMPPEPDOCK_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
677 IMPPEPDOCK_SHOW_WARNINGS = _IMP_pepdock.IMPPEPDOCK_SHOW_WARNINGS
678 
679 def get_module_version():
680  """get_module_version() -> std::string const"""
681  return _IMP_pepdock.get_module_version()
682 
683 def get_example_path(fname):
684  """get_example_path(std::string fname) -> std::string"""
685  return _IMP_pepdock.get_example_path(fname)
686 
687 def get_data_path(fname):
688  """get_data_path(std::string fname) -> std::string"""
689  return _IMP_pepdock.get_data_path(fname)
690 
691 from . import _version_check
692 _version_check.check_version(get_module_version())
693 __version__ = get_module_version()
694 
695 
696 
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
Composable functors to implement scores via compile-time composition.
def __init__
Constructor.
Code to compute statistical measures.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
Support for the RMF file format for storing hierarchical molecular data and markup.
Divide-and-conquer inferential optimization in discrete space.