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IMP Reference Guide  2.6.2
The Integrative Modeling Platform
multifit/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.8
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2016 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_multifit', [dirname(__file__)])
23  except ImportError:
24  import _IMP_multifit
25  return _IMP_multifit
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_multifit', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_multifit = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_multifit
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except Exception:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except Exception:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_MULTIFIT_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_MULTIFIT_SwigPyIterator class."""
115 
116  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
117 
118  def __init__(self, *args, **kwargs):
119  raise AttributeError("No constructor defined - class is abstract")
120  __repr__ = _swig_repr
121  __swig_destroy__ = _IMP_multifit.delete_IMP_MULTIFIT_SwigPyIterator
122  __del__ = lambda self: None
123 
124  def value(self):
125  """value(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
126  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_value(self)
127 
128 
129  def incr(self, n=1):
130  """
131  incr(IMP_MULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_MULTIFIT_SwigPyIterator
132  incr(IMP_MULTIFIT_SwigPyIterator self) -> IMP_MULTIFIT_SwigPyIterator
133  """
134  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_incr(self, n)
135 
136 
137  def decr(self, n=1):
138  """
139  decr(IMP_MULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_MULTIFIT_SwigPyIterator
140  decr(IMP_MULTIFIT_SwigPyIterator self) -> IMP_MULTIFIT_SwigPyIterator
141  """
142  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_decr(self, n)
143 
144 
145  def distance(self, x):
146  """distance(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> ptrdiff_t"""
147  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_distance(self, x)
148 
149 
150  def equal(self, x):
151  """equal(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> bool"""
152  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_equal(self, x)
153 
154 
155  def copy(self):
156  """copy(IMP_MULTIFIT_SwigPyIterator self) -> IMP_MULTIFIT_SwigPyIterator"""
157  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_copy(self)
158 
159 
160  def next(self):
161  """next(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
162  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_next(self)
163 
164 
165  def __next__(self):
166  """__next__(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
167  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___next__(self)
168 
169 
170  def previous(self):
171  """previous(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
172  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_previous(self)
173 
174 
175  def advance(self, n):
176  """advance(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
177  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_advance(self, n)
178 
179 
180  def __eq__(self, x):
181  """__eq__(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> bool"""
182  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___eq__(self, x)
183 
184 
185  def __ne__(self, x):
186  """__ne__(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> bool"""
187  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___ne__(self, x)
188 
189 
190  def __iadd__(self, n):
191  """__iadd__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
192  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___iadd__(self, n)
193 
194 
195  def __isub__(self, n):
196  """__isub__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
197  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___isub__(self, n)
198 
199 
200  def __add__(self, n):
201  """__add__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
202  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___add__(self, n)
203 
204 
205  def __sub__(self, *args):
206  """
207  __sub__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator
208  __sub__(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> ptrdiff_t
209  """
210  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___sub__(self, *args)
211 
212  def __iter__(self):
213  return self
214 IMP_MULTIFIT_SwigPyIterator_swigregister = _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_swigregister
215 IMP_MULTIFIT_SwigPyIterator_swigregister(IMP_MULTIFIT_SwigPyIterator)
216 
217 
218 _value_types=[]
219 _object_types=[]
220 _raii_types=[]
221 _plural_types=[]
222 
223 
224 _IMP_multifit.IMP_DEBUG_swigconstant(_IMP_multifit)
225 IMP_DEBUG = _IMP_multifit.IMP_DEBUG
226 
227 _IMP_multifit.IMP_RELEASE_swigconstant(_IMP_multifit)
228 IMP_RELEASE = _IMP_multifit.IMP_RELEASE
229 
230 _IMP_multifit.IMP_SILENT_swigconstant(_IMP_multifit)
231 IMP_SILENT = _IMP_multifit.IMP_SILENT
232 
233 _IMP_multifit.IMP_PROGRESS_swigconstant(_IMP_multifit)
234 IMP_PROGRESS = _IMP_multifit.IMP_PROGRESS
235 
236 _IMP_multifit.IMP_TERSE_swigconstant(_IMP_multifit)
237 IMP_TERSE = _IMP_multifit.IMP_TERSE
238 
239 _IMP_multifit.IMP_VERBOSE_swigconstant(_IMP_multifit)
240 IMP_VERBOSE = _IMP_multifit.IMP_VERBOSE
241 
242 _IMP_multifit.IMP_MEMORY_swigconstant(_IMP_multifit)
243 IMP_MEMORY = _IMP_multifit.IMP_MEMORY
244 
245 _IMP_multifit.IMP_NONE_swigconstant(_IMP_multifit)
246 IMP_NONE = _IMP_multifit.IMP_NONE
247 
248 _IMP_multifit.IMP_USAGE_swigconstant(_IMP_multifit)
249 IMP_USAGE = _IMP_multifit.IMP_USAGE
250 
251 _IMP_multifit.IMP_INTERNAL_swigconstant(_IMP_multifit)
252 IMP_INTERNAL = _IMP_multifit.IMP_INTERNAL
253 
254 _IMP_multifit.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_multifit)
255 IMP_KERNEL_HAS_LOG4CXX = _IMP_multifit.IMP_KERNEL_HAS_LOG4CXX
256 
257 _IMP_multifit.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_multifit)
258 IMP_COMPILER_HAS_AUTO = _IMP_multifit.IMP_COMPILER_HAS_AUTO
259 
260 _IMP_multifit.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_multifit)
261 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_multifit.IMP_COMPILER_HAS_DEBUG_VECTOR
262 
263 _IMP_multifit.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_multifit)
264 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_multifit.IMP_COMPILER_HAS_UNIQUE_PTR
265 
266 _IMP_multifit.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
267 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_multifit.IMP_KERNEL_HAS_BOOST_RANDOM
268 
269 _IMP_multifit.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_multifit)
270 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_multifit.IMP_KERNEL_HAS_GPERFTOOLS
271 
272 _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_multifit)
273 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
274 
275 _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_multifit)
276 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
277 
278 _IMP_multifit.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_multifit)
279 IMPKERNEL_SHOW_WARNINGS = _IMP_multifit.IMPKERNEL_SHOW_WARNINGS
280 
281 import sys
282 class _DirectorObjects(object):
283  """@internal Simple class to keep references to director objects
284  to prevent premature deletion."""
285  def __init__(self):
286  self._objects = []
287  def register(self, obj):
288  """Take a reference to a director object; will only work for
289  refcounted C++ classes"""
290  if hasattr(obj, 'get_ref_count'):
291  self._objects.append(obj)
292  def cleanup(self):
293  """Only drop our reference and allow cleanup by Python if no other
294  Python references exist (we hold 3 references: one in self._objects,
295  one in x, and one in the argument list for getrefcount) *and* no
296  other C++ references exist (the Python object always holds one)"""
297  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
298  or x.get_ref_count() > 1]
299 # Do in two steps so the references are kept until the end of the
300 # function (deleting references may trigger a fresh call to this method)
301  self._objects = objs
302  def get_object_count(self):
303  """Get number of director objects (useful for testing only)"""
304  return len(self._objects)
305 _director_objects = _DirectorObjects()
306 
307 class _ostream(object):
308  """Proxy of C++ std::ostream class."""
309 
310  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
311 
312  def __init__(self, *args, **kwargs):
313  raise AttributeError("No constructor defined")
314  __repr__ = _swig_repr
315 
316  def write(self, osa_buf):
317  """write(_ostream self, char const * osa_buf)"""
318  return _IMP_multifit._ostream_write(self, osa_buf)
319 
320 _ostream_swigregister = _IMP_multifit._ostream_swigregister
321 _ostream_swigregister(_ostream)
322 
323 
324 _IMP_multifit.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_multifit)
325 IMP_COMPILER_HAS_OVERRIDE = _IMP_multifit.IMP_COMPILER_HAS_OVERRIDE
326 
327 _IMP_multifit.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_multifit)
328 IMP_COMPILER_HAS_FINAL = _IMP_multifit.IMP_COMPILER_HAS_FINAL
329 
330 _IMP_multifit.IMP_HAS_NOEXCEPT_swigconstant(_IMP_multifit)
331 IMP_HAS_NOEXCEPT = _IMP_multifit.IMP_HAS_NOEXCEPT
332 import IMP
333 
334 _IMP_multifit.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
335 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_CGAL_HAS_BOOST_FILESYSTEM
336 
337 _IMP_multifit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
338 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
339 
340 _IMP_multifit.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
341 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_multifit.IMP_CGAL_HAS_BOOST_RANDOM
342 
343 _IMP_multifit.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
344 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_CGAL_HAS_BOOST_SYSTEM
345 
346 _IMP_multifit.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_multifit)
347 IMPCGAL_SHOW_WARNINGS = _IMP_multifit.IMPCGAL_SHOW_WARNINGS
348 import IMP.cgal
349 
350 _IMP_multifit.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
351 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_multifit.IMP_ALGEBRA_HAS_IMP_CGAL
352 
353 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
354 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
355 
356 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
357 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
358 
359 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
360 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_RANDOM
361 
362 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
363 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_SYSTEM
364 
365 _IMP_multifit.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_multifit)
366 IMP_ALGEBRA_HAS_CGAL = _IMP_multifit.IMP_ALGEBRA_HAS_CGAL
367 
368 _IMP_multifit.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_multifit)
369 IMP_ALGEBRA_HAS_ANN = _IMP_multifit.IMP_ALGEBRA_HAS_ANN
370 
371 _IMP_multifit.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_multifit)
372 IMPALGEBRA_SHOW_WARNINGS = _IMP_multifit.IMPALGEBRA_SHOW_WARNINGS
373 import IMP.algebra
374 
375 _IMP_multifit.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
376 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_multifit.IMP_DISPLAY_HAS_IMP_CGAL
377 
378 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
379 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
380 
381 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
382 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
383 
384 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
385 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_RANDOM
386 
387 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
388 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_SYSTEM
389 
390 _IMP_multifit.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_multifit)
391 IMP_DISPLAY_HAS_CGAL = _IMP_multifit.IMP_DISPLAY_HAS_CGAL
392 
393 _IMP_multifit.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_multifit)
394 IMPDISPLAY_SHOW_WARNINGS = _IMP_multifit.IMPDISPLAY_SHOW_WARNINGS
395 import IMP.display
396 
397 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
398 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
399 
400 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
401 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
402 
403 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
404 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
405 
406 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
407 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
408 
409 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
410 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
411 
412 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_multifit)
413 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_CGAL
414 
415 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_multifit)
416 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_HDF5
417 
418 _IMP_multifit.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_multifit)
419 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_multifit.IMPSCOREFUNCTOR_SHOW_WARNINGS
420 import IMP.score_functor
421 
422 _IMP_multifit.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
423 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_multifit.IMP_STATISTICS_HAS_IMP_CGAL
424 
425 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
426 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
427 
428 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
429 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
430 
431 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
432 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_RANDOM
433 
434 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
435 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_SYSTEM
436 
437 _IMP_multifit.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_multifit)
438 IMP_STATISTICS_HAS_CGAL = _IMP_multifit.IMP_STATISTICS_HAS_CGAL
439 
440 _IMP_multifit.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_multifit)
441 IMPSTATISTICS_SHOW_WARNINGS = _IMP_multifit.IMPSTATISTICS_SHOW_WARNINGS
442 import IMP.statistics
443 
444 _IMP_multifit.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
445 IMP_CORE_HAS_IMP_CGAL = _IMP_multifit.IMP_CORE_HAS_IMP_CGAL
446 
447 _IMP_multifit.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
448 IMP_CORE_HAS_IMP_KERNEL = _IMP_multifit.IMP_CORE_HAS_IMP_KERNEL
449 
450 _IMP_multifit.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
451 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_CORE_HAS_BOOST_FILESYSTEM
452 
453 _IMP_multifit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
454 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
455 
456 _IMP_multifit.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
457 IMP_CORE_HAS_BOOST_RANDOM = _IMP_multifit.IMP_CORE_HAS_BOOST_RANDOM
458 
459 _IMP_multifit.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
460 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_CORE_HAS_BOOST_SYSTEM
461 
462 _IMP_multifit.IMP_CORE_HAS_CGAL_swigconstant(_IMP_multifit)
463 IMP_CORE_HAS_CGAL = _IMP_multifit.IMP_CORE_HAS_CGAL
464 
465 _IMP_multifit.IMP_CORE_HAS_HDF5_swigconstant(_IMP_multifit)
466 IMP_CORE_HAS_HDF5 = _IMP_multifit.IMP_CORE_HAS_HDF5
467 
468 _IMP_multifit.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_multifit)
469 IMPCORE_SHOW_WARNINGS = _IMP_multifit.IMPCORE_SHOW_WARNINGS
470 import IMP.core
471 
472 _IMP_multifit.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_multifit)
473 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_multifit.IMP_CONTAINER_HAS_IMP_ALGEBRA
474 
475 _IMP_multifit.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
476 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_multifit.IMP_CONTAINER_HAS_IMP_CGAL
477 
478 _IMP_multifit.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
479 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_multifit.IMP_CONTAINER_HAS_IMP_DISPLAY
480 
481 _IMP_multifit.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
482 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_multifit.IMP_CONTAINER_HAS_IMP_KERNEL
483 
484 _IMP_multifit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
485 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
486 
487 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
488 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
489 
490 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
491 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
492 
493 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
494 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_RANDOM
495 
496 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
497 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_SYSTEM
498 
499 _IMP_multifit.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_multifit)
500 IMP_CONTAINER_HAS_CGAL = _IMP_multifit.IMP_CONTAINER_HAS_CGAL
501 
502 _IMP_multifit.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_multifit)
503 IMP_CONTAINER_HAS_HDF5 = _IMP_multifit.IMP_CONTAINER_HAS_HDF5
504 
505 _IMP_multifit.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_multifit)
506 IMPCONTAINER_SHOW_WARNINGS = _IMP_multifit.IMPCONTAINER_SHOW_WARNINGS
507 import IMP.container
508 
509 _IMP_multifit.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
510 IMP_ATOM_HAS_IMP_CGAL = _IMP_multifit.IMP_ATOM_HAS_IMP_CGAL
511 
512 _IMP_multifit.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
513 IMP_ATOM_HAS_IMP_KERNEL = _IMP_multifit.IMP_ATOM_HAS_IMP_KERNEL
514 
515 _IMP_multifit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
516 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
517 
518 _IMP_multifit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
519 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
520 
521 _IMP_multifit.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
522 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_multifit.IMP_ATOM_HAS_BOOST_RANDOM
523 
524 _IMP_multifit.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
525 IMP_ATOM_HAS_BOOST_REGEX = _IMP_multifit.IMP_ATOM_HAS_BOOST_REGEX
526 
527 _IMP_multifit.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
528 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_ATOM_HAS_BOOST_SYSTEM
529 
530 _IMP_multifit.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_multifit)
531 IMP_ATOM_HAS_CGAL = _IMP_multifit.IMP_ATOM_HAS_CGAL
532 
533 _IMP_multifit.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_multifit)
534 IMP_ATOM_HAS_HDF5 = _IMP_multifit.IMP_ATOM_HAS_HDF5
535 
536 _IMP_multifit.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_multifit)
537 IMPATOM_SHOW_WARNINGS = _IMP_multifit.IMPATOM_SHOW_WARNINGS
538 
539 _IMP_multifit.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_multifit)
540 IMP_ATOM_TYPE_INDEX = _IMP_multifit.IMP_ATOM_TYPE_INDEX
541 
542 _IMP_multifit.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_multifit)
543 IMP_RESIDUE_TYPE_INDEX = _IMP_multifit.IMP_RESIDUE_TYPE_INDEX
544 
545 _IMP_multifit.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_multifit)
546 IMP_HIERARCHY_TYPE_INDEX = _IMP_multifit.IMP_HIERARCHY_TYPE_INDEX
547 import IMP.atom
548 
549 _IMP_multifit.IMP_EM_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
550 IMP_EM_HAS_IMP_CGAL = _IMP_multifit.IMP_EM_HAS_IMP_CGAL
551 
552 _IMP_multifit.IMP_EM_HAS_IMP_CONTAINER_swigconstant(_IMP_multifit)
553 IMP_EM_HAS_IMP_CONTAINER = _IMP_multifit.IMP_EM_HAS_IMP_CONTAINER
554 
555 _IMP_multifit.IMP_EM_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
556 IMP_EM_HAS_IMP_DISPLAY = _IMP_multifit.IMP_EM_HAS_IMP_DISPLAY
557 
558 _IMP_multifit.IMP_EM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
559 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_EM_HAS_IMP_SCORE_FUNCTOR
560 
561 _IMP_multifit.IMP_EM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
562 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_EM_HAS_BOOST_FILESYSTEM
563 
564 _IMP_multifit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
565 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
566 
567 _IMP_multifit.IMP_EM_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
568 IMP_EM_HAS_BOOST_RANDOM = _IMP_multifit.IMP_EM_HAS_BOOST_RANDOM
569 
570 _IMP_multifit.IMP_EM_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
571 IMP_EM_HAS_BOOST_REGEX = _IMP_multifit.IMP_EM_HAS_BOOST_REGEX
572 
573 _IMP_multifit.IMP_EM_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
574 IMP_EM_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_EM_HAS_BOOST_SYSTEM
575 
576 _IMP_multifit.IMP_EM_HAS_CGAL_swigconstant(_IMP_multifit)
577 IMP_EM_HAS_CGAL = _IMP_multifit.IMP_EM_HAS_CGAL
578 
579 _IMP_multifit.IMP_EM_HAS_HDF5_swigconstant(_IMP_multifit)
580 IMP_EM_HAS_HDF5 = _IMP_multifit.IMP_EM_HAS_HDF5
581 
582 _IMP_multifit.IMPEM_SHOW_WARNINGS_swigconstant(_IMP_multifit)
583 IMPEM_SHOW_WARNINGS = _IMP_multifit.IMPEM_SHOW_WARNINGS
584 import IMP.em
585 
586 _IMP_multifit.IMP_RMF_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
587 IMP_RMF_HAS_IMP_CGAL = _IMP_multifit.IMP_RMF_HAS_IMP_CGAL
588 
589 _IMP_multifit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
590 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
591 
592 _IMP_multifit.IMP_RMF_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
593 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_RMF_HAS_BOOST_FILESYSTEM
594 
595 _IMP_multifit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
596 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
597 
598 _IMP_multifit.IMP_RMF_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
599 IMP_RMF_HAS_BOOST_RANDOM = _IMP_multifit.IMP_RMF_HAS_BOOST_RANDOM
600 
601 _IMP_multifit.IMP_RMF_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
602 IMP_RMF_HAS_BOOST_REGEX = _IMP_multifit.IMP_RMF_HAS_BOOST_REGEX
603 
604 _IMP_multifit.IMP_RMF_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
605 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_RMF_HAS_BOOST_SYSTEM
606 
607 _IMP_multifit.IMP_RMF_HAS_CGAL_swigconstant(_IMP_multifit)
608 IMP_RMF_HAS_CGAL = _IMP_multifit.IMP_RMF_HAS_CGAL
609 
610 _IMP_multifit.IMP_RMF_HAS_HDF5_swigconstant(_IMP_multifit)
611 IMP_RMF_HAS_HDF5 = _IMP_multifit.IMP_RMF_HAS_HDF5
612 
613 _IMP_multifit.IMPRMF_SHOW_WARNINGS_swigconstant(_IMP_multifit)
614 IMPRMF_SHOW_WARNINGS = _IMP_multifit.IMPRMF_SHOW_WARNINGS
615 import IMP.rmf
616 import RMF
617 
618 _IMP_multifit.IMP_DOMINO_HAS_IMP_ATOM_swigconstant(_IMP_multifit)
619 IMP_DOMINO_HAS_IMP_ATOM = _IMP_multifit.IMP_DOMINO_HAS_IMP_ATOM
620 
621 _IMP_multifit.IMP_DOMINO_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
622 IMP_DOMINO_HAS_IMP_CGAL = _IMP_multifit.IMP_DOMINO_HAS_IMP_CGAL
623 
624 _IMP_multifit.IMP_DOMINO_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
625 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_multifit.IMP_DOMINO_HAS_IMP_KERNEL
626 
627 _IMP_multifit.IMP_DOMINO_HAS_IMP_RMF_swigconstant(_IMP_multifit)
628 IMP_DOMINO_HAS_IMP_RMF = _IMP_multifit.IMP_DOMINO_HAS_IMP_RMF
629 
630 _IMP_multifit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
631 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
632 
633 _IMP_multifit.IMP_DOMINO_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
634 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_DOMINO_HAS_BOOST_FILESYSTEM
635 
636 _IMP_multifit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
637 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
638 
639 _IMP_multifit.IMP_DOMINO_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
640 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_multifit.IMP_DOMINO_HAS_BOOST_RANDOM
641 
642 _IMP_multifit.IMP_DOMINO_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
643 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_multifit.IMP_DOMINO_HAS_BOOST_REGEX
644 
645 _IMP_multifit.IMP_DOMINO_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
646 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_DOMINO_HAS_BOOST_SYSTEM
647 
648 _IMP_multifit.IMP_DOMINO_HAS_CGAL_swigconstant(_IMP_multifit)
649 IMP_DOMINO_HAS_CGAL = _IMP_multifit.IMP_DOMINO_HAS_CGAL
650 
651 _IMP_multifit.IMP_DOMINO_HAS_HDF5_swigconstant(_IMP_multifit)
652 IMP_DOMINO_HAS_HDF5 = _IMP_multifit.IMP_DOMINO_HAS_HDF5
653 
654 _IMP_multifit.IMP_DOMINO_HAS_RMF_swigconstant(_IMP_multifit)
655 IMP_DOMINO_HAS_RMF = _IMP_multifit.IMP_DOMINO_HAS_RMF
656 
657 _IMP_multifit.IMPDOMINO_SHOW_WARNINGS_swigconstant(_IMP_multifit)
658 IMPDOMINO_SHOW_WARNINGS = _IMP_multifit.IMPDOMINO_SHOW_WARNINGS
659 import RMF_HDF5
660 import IMP.domino
661 
662 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
663 IMP_MULTIFIT_HAS_IMP_CGAL = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CGAL
664 
665 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CONTAINER_swigconstant(_IMP_multifit)
666 IMP_MULTIFIT_HAS_IMP_CONTAINER = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CONTAINER
667 
668 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
669 IMP_MULTIFIT_HAS_IMP_DISPLAY = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_DISPLAY
670 
671 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
672 IMP_MULTIFIT_HAS_IMP_KERNEL = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_KERNEL
673 
674 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_RMF_swigconstant(_IMP_multifit)
675 IMP_MULTIFIT_HAS_IMP_RMF = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_RMF
676 
677 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
678 IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR
679 
680 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_GRAPH_swigconstant(_IMP_multifit)
681 IMP_MULTIFIT_HAS_BOOST_GRAPH = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_GRAPH
682 
683 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
684 IMP_MULTIFIT_HAS_BOOST_RANDOM = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_RANDOM
685 
686 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
687 IMP_MULTIFIT_HAS_BOOST_REGEX = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_REGEX
688 
689 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
690 IMP_MULTIFIT_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_SYSTEM
691 
692 _IMP_multifit.IMP_MULTIFIT_HAS_CGAL_swigconstant(_IMP_multifit)
693 IMP_MULTIFIT_HAS_CGAL = _IMP_multifit.IMP_MULTIFIT_HAS_CGAL
694 
695 _IMP_multifit.IMP_MULTIFIT_HAS_HDF5_swigconstant(_IMP_multifit)
696 IMP_MULTIFIT_HAS_HDF5 = _IMP_multifit.IMP_MULTIFIT_HAS_HDF5
697 
698 _IMP_multifit.IMP_MULTIFIT_HAS_RMF_swigconstant(_IMP_multifit)
699 IMP_MULTIFIT_HAS_RMF = _IMP_multifit.IMP_MULTIFIT_HAS_RMF
700 
701 _IMP_multifit.IMPMULTIFIT_SHOW_WARNINGS_swigconstant(_IMP_multifit)
702 IMPMULTIFIT_SHOW_WARNINGS = _IMP_multifit.IMPMULTIFIT_SHOW_WARNINGS
703 
704 _object_types.append("RadiusOfGyrationRestraint")
705 
706 
707 def _object_cast_to_RadiusOfGyrationRestraint(o):
708  """_object_cast_to_RadiusOfGyrationRestraint(Object o) -> RadiusOfGyrationRestraint"""
709  return _IMP_multifit._object_cast_to_RadiusOfGyrationRestraint(o)
710 
711 _object_types.append("ComponentHeader")
712 
713 
714 def _object_cast_to_ComponentHeader(o):
715  """_object_cast_to_ComponentHeader(Object o) -> ComponentHeader"""
716  return _IMP_multifit._object_cast_to_ComponentHeader(o)
717 
718 _object_types.append("AssemblyHeader")
719 
720 
721 def _object_cast_to_AssemblyHeader(o):
722  """_object_cast_to_AssemblyHeader(Object o) -> AssemblyHeader"""
723  return _IMP_multifit._object_cast_to_AssemblyHeader(o)
724 
725 _object_types.append("SettingsData")
726 
727 
728 def _object_cast_to_SettingsData(o):
729  """_object_cast_to_SettingsData(Object o) -> SettingsData"""
730  return _IMP_multifit._object_cast_to_SettingsData(o)
731 
732 _object_types.append("WeightedExcludedVolumeRestraint")
733 
734 
735 def _object_cast_to_WeightedExcludedVolumeRestraint(o):
736  """_object_cast_to_WeightedExcludedVolumeRestraint(Object o) -> WeightedExcludedVolumeRestraint"""
737  return _IMP_multifit._object_cast_to_WeightedExcludedVolumeRestraint(o)
738 
739 _object_types.append("ComplementarityRestraint")
740 
741 
742 def _object_cast_to_ComplementarityRestraint(o):
743  """_object_cast_to_ComplementarityRestraint(Object o) -> ComplementarityRestraint"""
744  return _IMP_multifit._object_cast_to_ComplementarityRestraint(o)
745 
746 ProteinRecordDataList=list
747 _plural_types.append("ProteinRecordDataList")
748 _value_types.append("ProteinRecordData")
749 
750 
751 FittingSolutionRecords=list
752 _plural_types.append("FittingSolutionRecords")
753 _value_types.append("FittingSolutionRecord")
754 
755 
756 AnchorsDataList=list
757 _plural_types.append("AnchorsDataList")
758 _value_types.append("AnchorsData")
759 
760 
761 DominoParamsList=list
762 _plural_types.append("DominoParamsList")
763 _value_types.append("DominoParams")
764 
765 
766 ComplementarityParamsList=list
767 _plural_types.append("ComplementarityParamsList")
768 _value_types.append("ComplementarityParams")
769 
770 
771 XlinkParamsList=list
772 _plural_types.append("XlinkParamsList")
773 _value_types.append("XlinkParams")
774 
775 
776 ConnectivityParamsList=list
777 _plural_types.append("ConnectivityParamsList")
778 _value_types.append("ConnectivityParams")
779 
780 
781 FragmentsParamsList=list
782 _plural_types.append("FragmentsParamsList")
783 _value_types.append("FragmentsParams")
784 
785 
786 RogParamsList=list
787 _plural_types.append("RogParamsList")
788 _value_types.append("RogParams")
789 
790 
791 EVParamsList=list
792 _plural_types.append("EVParamsList")
793 _value_types.append("EVParams")
794 
795 
796 FiltersParamsList=list
797 _plural_types.append("FiltersParamsList")
798 _value_types.append("FiltersParams")
799 
800 
801 AlignmentParamsList=list
802 _plural_types.append("AlignmentParamsList")
803 _value_types.append("AlignmentParams")
804 
805 
806 FittingParamsList=list
807 _plural_types.append("FittingParamsList")
808 _value_types.append("FittingParams")
809 
810 
811 ProteinsAnchorsSamplingSpaces=list
812 _plural_types.append("ProteinsAnchorsSamplingSpaces")
813 _value_types.append("ProteinsAnchorsSamplingSpace")
814 
815 
816 _object_types.append("ProteomicsData")
817 
818 
819 def _object_cast_to_ProteomicsData(o):
820  """_object_cast_to_ProteomicsData(Object o) -> ProteomicsData"""
821  return _IMP_multifit._object_cast_to_ProteomicsData(o)
822 
823 _object_types.append("FFTFitting")
824 
825 
826 def _object_cast_to_FFTFitting(o):
827  """_object_cast_to_FFTFitting(Object o) -> FFTFitting"""
828  return _IMP_multifit._object_cast_to_FFTFitting(o)
829 
830 _object_types.append("FFTFittingOutput")
831 
832 
833 def _object_cast_to_FFTFittingOutput(o):
834  """_object_cast_to_FFTFittingOutput(Object o) -> FFTFittingOutput"""
835  return _IMP_multifit._object_cast_to_FFTFittingOutput(o)
836 
837 _object_types.append("ProbabilisticAnchorGraph")
838 
839 
840 def _object_cast_to_ProbabilisticAnchorGraph(o):
841  """_object_cast_to_ProbabilisticAnchorGraph(Object o) -> ProbabilisticAnchorGraph"""
842  return _IMP_multifit._object_cast_to_ProbabilisticAnchorGraph(o)
843 
844 _object_types.append("Ensemble")
845 
846 
847 def _object_cast_to_Ensemble(o):
848  """_object_cast_to_Ensemble(Object o) -> Ensemble"""
849  return _IMP_multifit._object_cast_to_Ensemble(o)
850 
851 _object_types.append("ProteomicsEMAlignmentAtomic")
852 
853 
854 def _object_cast_to_ProteomicsEMAlignmentAtomic(o):
855  """_object_cast_to_ProteomicsEMAlignmentAtomic(Object o) -> ProteomicsEMAlignmentAtomic"""
856  return _IMP_multifit._object_cast_to_ProteomicsEMAlignmentAtomic(o)
857 
858 def add_surface_index(*args):
859  """
860  add_surface_index(Hierarchy mhd, IMP::Float apix, FloatKey shell_key, FloatKey radius_key, FloatKey weight_key)
861  add_surface_index(Hierarchy mhd, IMP::Float apix, FloatKey shell_key, FloatKey radius_key)
862  add_surface_index(Hierarchy mhd, IMP::Float apix, FloatKey shell_key)
863  add_surface_index(Hierarchy mhd, IMP::Float apix)
864  """
865  return _IMP_multifit.add_surface_index(*args)
866 
867 def create_weighted_excluded_volume_restraint(*args):
868  """
869  create_weighted_excluded_volume_restraint(RigidBody rb1, RigidBody rb2, FloatKey shell_key) -> Restraint
870  create_weighted_excluded_volume_restraint(RigidBody rb1, RigidBody rb2) -> Restraint
871  """
872  return _IMP_multifit.create_weighted_excluded_volume_restraint(*args)
873 class FittingSolutionRecord(object):
874  """Proxy of C++ IMP::multifit::FittingSolutionRecord class."""
875 
876  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
877 
878  def __init__(self):
879  """__init__(IMP::multifit::FittingSolutionRecord self) -> FittingSolutionRecord"""
880  this = _IMP_multifit.new_FittingSolutionRecord()
881  try:
882  self.this.append(this)
883  except Exception:
884  self.this = this
885 
886  def get_index(self):
887  """get_index(FittingSolutionRecord self) -> unsigned int"""
888  return _IMP_multifit.FittingSolutionRecord_get_index(self)
889 
890 
891  def set_index(self, new_ind):
892  """set_index(FittingSolutionRecord self, unsigned int new_ind)"""
893  return _IMP_multifit.FittingSolutionRecord_set_index(self, new_ind)
894 
895 
896  def get_solution_filename(self):
897  """get_solution_filename(FittingSolutionRecord self) -> std::string"""
898  return _IMP_multifit.FittingSolutionRecord_get_solution_filename(self)
899 
900 
901  def set_solution_filename(self, sol_fn):
902  """set_solution_filename(FittingSolutionRecord self, std::string sol_fn)"""
903  return _IMP_multifit.FittingSolutionRecord_set_solution_filename(self, sol_fn)
904 
905 
906  def get_fit_transformation(self):
907  """get_fit_transformation(FittingSolutionRecord self) -> Transformation3D"""
908  return _IMP_multifit.FittingSolutionRecord_get_fit_transformation(self)
909 
910 
911  def set_fit_transformation(self, t):
912  """set_fit_transformation(FittingSolutionRecord self, Transformation3D t)"""
913  return _IMP_multifit.FittingSolutionRecord_set_fit_transformation(self, t)
914 
915 
916  def get_match_size(self):
917  """get_match_size(FittingSolutionRecord self) -> unsigned int"""
918  return _IMP_multifit.FittingSolutionRecord_get_match_size(self)
919 
920 
921  def set_match_size(self, match_size):
922  """set_match_size(FittingSolutionRecord self, unsigned int match_size)"""
923  return _IMP_multifit.FittingSolutionRecord_set_match_size(self, match_size)
924 
925 
926  def get_match_average_distance(self):
927  """get_match_average_distance(FittingSolutionRecord self) -> IMP::Float"""
928  return _IMP_multifit.FittingSolutionRecord_get_match_average_distance(self)
929 
930 
931  def set_match_average_distance(self, match_avg_dist):
932  """set_match_average_distance(FittingSolutionRecord self, IMP::Float match_avg_dist)"""
933  return _IMP_multifit.FittingSolutionRecord_set_match_average_distance(self, match_avg_dist)
934 
935 
936  def get_fitting_score(self):
937  """get_fitting_score(FittingSolutionRecord self) -> IMP::Float"""
938  return _IMP_multifit.FittingSolutionRecord_get_fitting_score(self)
939 
940 
941  def set_fitting_score(self, fit_score):
942  """set_fitting_score(FittingSolutionRecord self, IMP::Float fit_score)"""
943  return _IMP_multifit.FittingSolutionRecord_set_fitting_score(self, fit_score)
944 
945 
946  def get_rmsd_to_reference(self):
947  """get_rmsd_to_reference(FittingSolutionRecord self) -> IMP::Float"""
948  return _IMP_multifit.FittingSolutionRecord_get_rmsd_to_reference(self)
949 
950 
951  def set_rmsd_to_reference(self, rmsd_to_ref):
952  """set_rmsd_to_reference(FittingSolutionRecord self, IMP::Float rmsd_to_ref)"""
953  return _IMP_multifit.FittingSolutionRecord_set_rmsd_to_reference(self, rmsd_to_ref)
954 
955 
956  def get_dock_transformation(self):
957  """get_dock_transformation(FittingSolutionRecord self) -> Transformation3D"""
958  return _IMP_multifit.FittingSolutionRecord_get_dock_transformation(self)
959 
960 
961  def set_dock_transformation(self, t):
962  """set_dock_transformation(FittingSolutionRecord self, Transformation3D t)"""
963  return _IMP_multifit.FittingSolutionRecord_set_dock_transformation(self, t)
964 
965 
966  def get_envelope_penetration_score(self):
967  """get_envelope_penetration_score(FittingSolutionRecord self) -> IMP::Float"""
968  return _IMP_multifit.FittingSolutionRecord_get_envelope_penetration_score(self)
969 
970 
971  def set_envelope_penetration_score(self, s):
972  """set_envelope_penetration_score(FittingSolutionRecord self, IMP::Float s)"""
973  return _IMP_multifit.FittingSolutionRecord_set_envelope_penetration_score(self, s)
974 
975 
976  def show(self, *args):
977  """
978  show(FittingSolutionRecord self, _ostream out)
979  show(FittingSolutionRecord self)
980  """
981  return _IMP_multifit.FittingSolutionRecord_show(self, *args)
982 
983 
984  def get_record_header():
985  """get_record_header() -> std::string"""
986  return _IMP_multifit.FittingSolutionRecord_get_record_header()
987 
988  get_record_header = staticmethod(get_record_header)
989 
990  def __str__(self):
991  """__str__(FittingSolutionRecord self) -> std::string"""
992  return _IMP_multifit.FittingSolutionRecord___str__(self)
993 
994 
995  def __repr__(self):
996  """__repr__(FittingSolutionRecord self) -> std::string"""
997  return _IMP_multifit.FittingSolutionRecord___repr__(self)
998 
999  __swig_destroy__ = _IMP_multifit.delete_FittingSolutionRecord
1000  __del__ = lambda self: None
1001 FittingSolutionRecord_swigregister = _IMP_multifit.FittingSolutionRecord_swigregister
1002 FittingSolutionRecord_swigregister(FittingSolutionRecord)
1003 
1004 def FittingSolutionRecord_get_record_header():
1005  """FittingSolutionRecord_get_record_header() -> std::string"""
1006  return _IMP_multifit.FittingSolutionRecord_get_record_header()
1007 
1008 
1009 def pca_based_rigid_fitting(*args):
1010  """
1011  pca_based_rigid_fitting(RigidBody rb, Refiner rb_refiner, DensityMap em_map, IMP::Float threshold, FloatKey wei_key, PrincipalComponentAnalysis3D dens_pca_input) -> FittingSolutions
1012  pca_based_rigid_fitting(RigidBody rb, Refiner rb_refiner, DensityMap em_map, IMP::Float threshold, FloatKey wei_key) -> FittingSolutions
1013  pca_based_rigid_fitting(RigidBody rb, Refiner rb_refiner, DensityMap em_map, IMP::Float threshold) -> FittingSolutions
1014  pca_based_rigid_fitting(IMP::ParticlesTemp ps, DensityMap em_map, IMP::Float threshold, FloatKey wei_key, PrincipalComponentAnalysis3D dens_pca_input) -> FittingSolutions
1015  pca_based_rigid_fitting(IMP::ParticlesTemp ps, DensityMap em_map, IMP::Float threshold, FloatKey wei_key) -> FittingSolutions
1016  pca_based_rigid_fitting(IMP::ParticlesTemp ps, DensityMap em_map, IMP::Float threshold) -> FittingSolutions
1017  """
1018  return _IMP_multifit.pca_based_rigid_fitting(*args)
1019 
1020 def write_markers(pca, out):
1021  """write_markers(PrincipalComponentAnalysis3D pca, _ostream out)"""
1022  return _IMP_multifit.write_markers(pca, out)
1023 class ComponentHeader(IMP.Object):
1024  """Proxy of C++ IMP::multifit::ComponentHeader class."""
1025 
1026  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1027 
1028  def __init__(self):
1029  """__init__(IMP::multifit::ComponentHeader self) -> ComponentHeader"""
1030  this = _IMP_multifit.new_ComponentHeader()
1031  try:
1032  self.this.append(this)
1033  except Exception:
1034  self.this = this
1035 
1036  def set_name(self, name):
1037  """set_name(ComponentHeader self, std::string const & name)"""
1038  return _IMP_multifit.ComponentHeader_set_name(self, name)
1039 
1040 
1041  def get_name(self):
1042  """get_name(ComponentHeader self) -> std::string"""
1043  return _IMP_multifit.ComponentHeader_get_name(self)
1044 
1045 
1046  def get_filename(self):
1047  """get_filename(ComponentHeader self) -> std::string"""
1048  return _IMP_multifit.ComponentHeader_get_filename(self)
1049 
1050 
1051  def set_filename(self, filename):
1052  """set_filename(ComponentHeader self, std::string const & filename)"""
1053  return _IMP_multifit.ComponentHeader_set_filename(self, filename)
1054 
1055 
1056  def get_surface_fn(self):
1057  """get_surface_fn(ComponentHeader self) -> std::string"""
1058  return _IMP_multifit.ComponentHeader_get_surface_fn(self)
1059 
1060 
1061  def set_surface_fn(self, fn):
1062  """set_surface_fn(ComponentHeader self, std::string const & fn)"""
1063  return _IMP_multifit.ComponentHeader_set_surface_fn(self, fn)
1064 
1065 
1066  def set_txt_ap_fn(self, pdb_ap_fn):
1067  """set_txt_ap_fn(ComponentHeader self, std::string const & pdb_ap_fn)"""
1068  return _IMP_multifit.ComponentHeader_set_txt_ap_fn(self, pdb_ap_fn)
1069 
1070 
1071  def get_txt_ap_fn(self):
1072  """get_txt_ap_fn(ComponentHeader self) -> std::string"""
1073  return _IMP_multifit.ComponentHeader_get_txt_ap_fn(self)
1074 
1075 
1076  def set_txt_fine_ap_fn(self, pdb_ap_fn):
1077  """set_txt_fine_ap_fn(ComponentHeader self, std::string const & pdb_ap_fn)"""
1078  return _IMP_multifit.ComponentHeader_set_txt_fine_ap_fn(self, pdb_ap_fn)
1079 
1080 
1081  def get_txt_fine_ap_fn(self):
1082  """get_txt_fine_ap_fn(ComponentHeader self) -> std::string"""
1083  return _IMP_multifit.ComponentHeader_get_txt_fine_ap_fn(self)
1084 
1085 
1086  def set_num_ap(self, num_ap):
1087  """set_num_ap(ComponentHeader self, int num_ap)"""
1088  return _IMP_multifit.ComponentHeader_set_num_ap(self, num_ap)
1089 
1090 
1091  def get_num_ap(self):
1092  """get_num_ap(ComponentHeader self) -> int"""
1093  return _IMP_multifit.ComponentHeader_get_num_ap(self)
1094 
1095 
1096  def set_num_fine_ap(self, num_ap):
1097  """set_num_fine_ap(ComponentHeader self, int num_ap)"""
1098  return _IMP_multifit.ComponentHeader_set_num_fine_ap(self, num_ap)
1099 
1100 
1101  def get_num_fine_ap(self):
1102  """get_num_fine_ap(ComponentHeader self) -> int"""
1103  return _IMP_multifit.ComponentHeader_get_num_fine_ap(self)
1104 
1105 
1106  def set_transformations_fn(self, transformations_fn):
1107  """set_transformations_fn(ComponentHeader self, std::string transformations_fn)"""
1108  return _IMP_multifit.ComponentHeader_set_transformations_fn(self, transformations_fn)
1109 
1110 
1111  def get_transformations_fn(self):
1112  """get_transformations_fn(ComponentHeader self) -> std::string"""
1113  return _IMP_multifit.ComponentHeader_get_transformations_fn(self)
1114 
1115 
1116  def set_reference_fn(self, ref_fn):
1117  """set_reference_fn(ComponentHeader self, std::string const & ref_fn)"""
1118  return _IMP_multifit.ComponentHeader_set_reference_fn(self, ref_fn)
1119 
1120 
1121  def get_reference_fn(self):
1122  """get_reference_fn(ComponentHeader self) -> std::string"""
1123  return _IMP_multifit.ComponentHeader_get_reference_fn(self)
1124 
1125 
1126  def get_version_info(self):
1127  """get_version_info(ComponentHeader self) -> VersionInfo"""
1128  return _IMP_multifit.ComponentHeader_get_version_info(self)
1129 
1130 
1131  def __str__(self):
1132  """__str__(ComponentHeader self) -> std::string"""
1133  return _IMP_multifit.ComponentHeader___str__(self)
1134 
1135 
1136  def __repr__(self):
1137  """__repr__(ComponentHeader self) -> std::string"""
1138  return _IMP_multifit.ComponentHeader___repr__(self)
1139 
1140 
1141  @staticmethod
1142  def get_from(o):
1143  return _object_cast_to_ComponentHeader(o)
1144 
1145 ComponentHeader_swigregister = _IMP_multifit.ComponentHeader_swigregister
1146 ComponentHeader_swigregister(ComponentHeader)
1147 
1148 class AssemblyHeader(IMP.Object):
1149  """Proxy of C++ IMP::multifit::AssemblyHeader class."""
1150 
1151  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1152 
1153  def __init__(self):
1154  """__init__(IMP::multifit::AssemblyHeader self) -> AssemblyHeader"""
1155  this = _IMP_multifit.new_AssemblyHeader()
1156  try:
1157  self.this.append(this)
1158  except Exception:
1159  self.this = this
1160 
1161  def set_dens_fn(self, dens_fn):
1162  """set_dens_fn(AssemblyHeader self, std::string const & dens_fn)"""
1163  return _IMP_multifit.AssemblyHeader_set_dens_fn(self, dens_fn)
1164 
1165 
1166  def get_dens_fn(self):
1167  """get_dens_fn(AssemblyHeader self) -> std::string"""
1168  return _IMP_multifit.AssemblyHeader_get_dens_fn(self)
1169 
1170 
1171  def set_resolution(self, res):
1172  """set_resolution(AssemblyHeader self, float res)"""
1173  return _IMP_multifit.AssemblyHeader_set_resolution(self, res)
1174 
1175 
1176  def get_resolution(self):
1177  """get_resolution(AssemblyHeader self) -> float"""
1178  return _IMP_multifit.AssemblyHeader_get_resolution(self)
1179 
1180 
1181  def get_spacing(self):
1182  """get_spacing(AssemblyHeader self) -> float"""
1183  return _IMP_multifit.AssemblyHeader_get_spacing(self)
1184 
1185 
1186  def set_spacing(self, spacing):
1187  """set_spacing(AssemblyHeader self, float spacing)"""
1188  return _IMP_multifit.AssemblyHeader_set_spacing(self, spacing)
1189 
1190 
1191  def set_threshold(self, t):
1192  """set_threshold(AssemblyHeader self, float t)"""
1193  return _IMP_multifit.AssemblyHeader_set_threshold(self, t)
1194 
1195 
1196  def get_threshold(self):
1197  """get_threshold(AssemblyHeader self) -> float"""
1198  return _IMP_multifit.AssemblyHeader_get_threshold(self)
1199 
1200 
1201  def get_origin(self):
1202  """get_origin(AssemblyHeader self) -> Vector3D"""
1203  return _IMP_multifit.AssemblyHeader_get_origin(self)
1204 
1205 
1206  def set_origin(self, origin):
1207  """set_origin(AssemblyHeader self, Vector3D origin)"""
1208  return _IMP_multifit.AssemblyHeader_set_origin(self, origin)
1209 
1210 
1211  def get_coarse_ap_fn(self):
1212  """get_coarse_ap_fn(AssemblyHeader self) -> std::string"""
1213  return _IMP_multifit.AssemblyHeader_get_coarse_ap_fn(self)
1214 
1215 
1216  def set_coarse_ap_fn(self, new_fn):
1217  """set_coarse_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1218  return _IMP_multifit.AssemblyHeader_set_coarse_ap_fn(self, new_fn)
1219 
1220 
1221  def get_coarse_over_sampled_ap_fn(self):
1222  """get_coarse_over_sampled_ap_fn(AssemblyHeader self) -> std::string"""
1223  return _IMP_multifit.AssemblyHeader_get_coarse_over_sampled_ap_fn(self)
1224 
1225 
1226  def set_coarse_over_sampled_ap_fn(self, new_fn):
1227  """set_coarse_over_sampled_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1228  return _IMP_multifit.AssemblyHeader_set_coarse_over_sampled_ap_fn(self, new_fn)
1229 
1230 
1231  def get_fine_ap_fn(self):
1232  """get_fine_ap_fn(AssemblyHeader self) -> std::string"""
1233  return _IMP_multifit.AssemblyHeader_get_fine_ap_fn(self)
1234 
1235 
1236  def set_fine_ap_fn(self, new_fn):
1237  """set_fine_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1238  return _IMP_multifit.AssemblyHeader_set_fine_ap_fn(self, new_fn)
1239 
1240 
1241  def get_fine_over_sampled_ap_fn(self):
1242  """get_fine_over_sampled_ap_fn(AssemblyHeader self) -> std::string"""
1243  return _IMP_multifit.AssemblyHeader_get_fine_over_sampled_ap_fn(self)
1244 
1245 
1246  def set_fine_over_sampled_ap_fn(self, new_fn):
1247  """set_fine_over_sampled_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1248  return _IMP_multifit.AssemblyHeader_set_fine_over_sampled_ap_fn(self, new_fn)
1249 
1250 
1251  def get_version_info(self):
1252  """get_version_info(AssemblyHeader self) -> VersionInfo"""
1253  return _IMP_multifit.AssemblyHeader_get_version_info(self)
1254 
1255 
1256  def __str__(self):
1257  """__str__(AssemblyHeader self) -> std::string"""
1258  return _IMP_multifit.AssemblyHeader___str__(self)
1259 
1260 
1261  def __repr__(self):
1262  """__repr__(AssemblyHeader self) -> std::string"""
1263  return _IMP_multifit.AssemblyHeader___repr__(self)
1264 
1265 
1266  @staticmethod
1267  def get_from(o):
1268  return _object_cast_to_AssemblyHeader(o)
1269 
1270 AssemblyHeader_swigregister = _IMP_multifit.AssemblyHeader_swigregister
1271 AssemblyHeader_swigregister(AssemblyHeader)
1272 
1273 class SettingsData(IMP.Object):
1274  """Proxy of C++ IMP::multifit::SettingsData class."""
1275 
1276  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1277 
1278  def __init__(self):
1279  """__init__(IMP::multifit::SettingsData self) -> SettingsData"""
1280  this = _IMP_multifit.new_SettingsData()
1281  try:
1282  self.this.append(this)
1283  except Exception:
1284  self.this = this
1285 
1286  def show_component_header_line(*args):
1287  """
1288  show_component_header_line(_ostream out)
1289  show_component_header_line()
1290  """
1291  return _IMP_multifit.SettingsData_show_component_header_line(*args)
1292 
1293  show_component_header_line = staticmethod(show_component_header_line)
1294 
1295  def get_component_header_line():
1296  """get_component_header_line() -> std::string"""
1297  return _IMP_multifit.SettingsData_get_component_header_line()
1298 
1299  get_component_header_line = staticmethod(get_component_header_line)
1300 
1301  def show_density_header_line(*args):
1302  """
1303  show_density_header_line(_ostream out)
1304  show_density_header_line()
1305  """
1306  return _IMP_multifit.SettingsData_show_density_header_line(*args)
1307 
1308  show_density_header_line = staticmethod(show_density_header_line)
1309 
1310  def get_density_header_line():
1311  """get_density_header_line() -> std::string"""
1312  return _IMP_multifit.SettingsData_get_density_header_line()
1313 
1314  get_density_header_line = staticmethod(get_density_header_line)
1315 
1316  def set_assembly_filename(self, fn):
1317  """set_assembly_filename(SettingsData self, std::string const & fn)"""
1318  return _IMP_multifit.SettingsData_set_assembly_filename(self, fn)
1319 
1320 
1321  def get_assembly_filename(self):
1322  """get_assembly_filename(SettingsData self) -> char const *"""
1323  return _IMP_multifit.SettingsData_get_assembly_filename(self)
1324 
1325 
1326  def set_assembly_header(self, h):
1327  """set_assembly_header(SettingsData self, AssemblyHeader h)"""
1328  return _IMP_multifit.SettingsData_set_assembly_header(self, h)
1329 
1330 
1331  def get_assembly_header(self):
1332  """get_assembly_header(SettingsData self) -> AssemblyHeader"""
1333  return _IMP_multifit.SettingsData_get_assembly_header(self)
1334 
1335 
1336  def set_data_path(self, fn):
1337  """set_data_path(SettingsData self, std::string const & fn)"""
1338  return _IMP_multifit.SettingsData_set_data_path(self, fn)
1339 
1340 
1341  def get_data_path(self):
1342  """get_data_path(SettingsData self) -> std::string"""
1343  return _IMP_multifit.SettingsData_get_data_path(self)
1344 
1345 
1346  def get_version_info(self):
1347  """get_version_info(SettingsData self) -> VersionInfo"""
1348  return _IMP_multifit.SettingsData_get_version_info(self)
1349 
1350 
1351  def remove_component_header(self, d):
1352  """remove_component_header(SettingsData self, ComponentHeader d)"""
1353  return _IMP_multifit.SettingsData_remove_component_header(self, d)
1354 
1355 
1356  def remove_component_headers(self, d):
1357  """remove_component_headers(SettingsData self, IMP::multifit::ComponentHeaders const & d)"""
1358  return _IMP_multifit.SettingsData_remove_component_headers(self, d)
1359 
1360 
1361  def set_component_headers(self, ps):
1362  """set_component_headers(SettingsData self, IMP::multifit::ComponentHeaders const & ps)"""
1363  return _IMP_multifit.SettingsData_set_component_headers(self, ps)
1364 
1365 
1366  def set_component_headers_order(self, objs):
1367  """set_component_headers_order(SettingsData self, IMP::multifit::ComponentHeaders const & objs)"""
1368  return _IMP_multifit.SettingsData_set_component_headers_order(self, objs)
1369 
1370 
1371  def add_component_header(self, obj):
1372  """add_component_header(SettingsData self, ComponentHeader obj) -> unsigned int"""
1373  return _IMP_multifit.SettingsData_add_component_header(self, obj)
1374 
1375 
1376  def add_component_headers(self, objs):
1377  """add_component_headers(SettingsData self, IMP::multifit::ComponentHeaders const & objs)"""
1378  return _IMP_multifit.SettingsData_add_component_headers(self, objs)
1379 
1380 
1381  def clear_component_headers(self):
1382  """clear_component_headers(SettingsData self)"""
1383  return _IMP_multifit.SettingsData_clear_component_headers(self)
1384 
1385 
1386  def get_number_of_component_headers(self):
1387  """get_number_of_component_headers(SettingsData self) -> unsigned int"""
1388  return _IMP_multifit.SettingsData_get_number_of_component_headers(self)
1389 
1390 
1391  def get_has_component_headers(self):
1392  """get_has_component_headers(SettingsData self) -> bool"""
1393  return _IMP_multifit.SettingsData_get_has_component_headers(self)
1394 
1395 
1396  def get_component_header(self, i):
1397  """get_component_header(SettingsData self, unsigned int i) -> ComponentHeader"""
1398  return _IMP_multifit.SettingsData_get_component_header(self, i)
1399 
1400 
1401  def get_component_headers(self):
1402  """get_component_headers(SettingsData self) -> IMP::multifit::ComponentHeaders"""
1403  return _IMP_multifit.SettingsData_get_component_headers(self)
1404 
1405 
1406  def reserve_component_headers(self, sz):
1407  """reserve_component_headers(SettingsData self, unsigned int sz)"""
1408  return _IMP_multifit.SettingsData_reserve_component_headers(self, sz)
1409 
1410 
1411  def __str__(self):
1412  """__str__(SettingsData self) -> std::string"""
1413  return _IMP_multifit.SettingsData___str__(self)
1414 
1415 
1416  def __repr__(self):
1417  """__repr__(SettingsData self) -> std::string"""
1418  return _IMP_multifit.SettingsData___repr__(self)
1419 
1420 
1421  @staticmethod
1422  def get_from(o):
1423  return _object_cast_to_SettingsData(o)
1424 
1425 SettingsData_swigregister = _IMP_multifit.SettingsData_swigregister
1426 SettingsData_swigregister(SettingsData)
1427 
1428 def SettingsData_show_component_header_line(*args):
1429  """
1430  show_component_header_line(_ostream out)
1431  SettingsData_show_component_header_line()
1432  """
1433  return _IMP_multifit.SettingsData_show_component_header_line(*args)
1434 
1435 def SettingsData_get_component_header_line():
1436  """SettingsData_get_component_header_line() -> std::string"""
1437  return _IMP_multifit.SettingsData_get_component_header_line()
1438 
1439 def SettingsData_show_density_header_line(*args):
1440  """
1441  show_density_header_line(_ostream out)
1442  SettingsData_show_density_header_line()
1443  """
1444  return _IMP_multifit.SettingsData_show_density_header_line(*args)
1445 
1446 def SettingsData_get_density_header_line():
1447  """SettingsData_get_density_header_line() -> std::string"""
1448  return _IMP_multifit.SettingsData_get_density_header_line()
1449 
1450 
1451 def read_settings(filename):
1452  """read_settings(char const * filename) -> SettingsData"""
1453  return _IMP_multifit.read_settings(filename)
1454 
1455 def write_settings(filename, sd):
1456  """write_settings(char const * filename, SettingsData sd)"""
1457  return _IMP_multifit.write_settings(filename, sd)
1458 class WeightedExcludedVolumeRestraint(IMP.Restraint):
1459  """Proxy of C++ IMP::multifit::WeightedExcludedVolumeRestraint class."""
1460 
1461  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1462 
1463  def __init__(self, *args):
1464  """
1465  __init__(IMP::multifit::WeightedExcludedVolumeRestraint self, IMP::core::RigidBodies rbs, Refiner refiner, FloatKey weight_key) -> WeightedExcludedVolumeRestraint
1466  __init__(IMP::multifit::WeightedExcludedVolumeRestraint self, IMP::core::RigidBodies rbs, Refiner refiner) -> WeightedExcludedVolumeRestraint
1467  """
1468  this = _IMP_multifit.new_WeightedExcludedVolumeRestraint(*args)
1469  try:
1470  self.this.append(this)
1471  except Exception:
1472  self.this = this
1473 
1474  def do_get_inputs(self):
1475  """do_get_inputs(WeightedExcludedVolumeRestraint self) -> IMP::ModelObjectsTemp"""
1476  return _IMP_multifit.WeightedExcludedVolumeRestraint_do_get_inputs(self)
1477 
1478 
1479  def get_version_info(self):
1480  """get_version_info(WeightedExcludedVolumeRestraint self) -> VersionInfo"""
1481  return _IMP_multifit.WeightedExcludedVolumeRestraint_get_version_info(self)
1482 
1483 
1484  def __str__(self):
1485  """__str__(WeightedExcludedVolumeRestraint self) -> std::string"""
1486  return _IMP_multifit.WeightedExcludedVolumeRestraint___str__(self)
1487 
1488 
1489  def __repr__(self):
1490  """__repr__(WeightedExcludedVolumeRestraint self) -> std::string"""
1491  return _IMP_multifit.WeightedExcludedVolumeRestraint___repr__(self)
1492 
1493 
1494  @staticmethod
1495  def get_from(o):
1496  return _object_cast_to_WeightedExcludedVolumeRestraint(o)
1497 
1498 WeightedExcludedVolumeRestraint_swigregister = _IMP_multifit.WeightedExcludedVolumeRestraint_swigregister
1499 WeightedExcludedVolumeRestraint_swigregister(WeightedExcludedVolumeRestraint)
1500 
1501 class FFTFittingOutput(IMP.Object):
1502  """Proxy of C++ IMP::multifit::FFTFittingOutput class."""
1503 
1504  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1505 
1506  def __init__(self):
1507  """__init__(IMP::multifit::FFTFittingOutput self) -> FFTFittingOutput"""
1508  this = _IMP_multifit.new_FFTFittingOutput()
1509  try:
1510  self.this.append(this)
1511  except Exception:
1512  self.this = this
1513 
1514  def get_version_info(self):
1515  """get_version_info(FFTFittingOutput self) -> VersionInfo"""
1516  return _IMP_multifit.FFTFittingOutput_get_version_info(self)
1517 
1518  best_fits_ = _swig_property(_IMP_multifit.FFTFittingOutput_best_fits__get, _IMP_multifit.FFTFittingOutput_best_fits__set)
1519  best_trans_per_rot_ = _swig_property(_IMP_multifit.FFTFittingOutput_best_trans_per_rot__get, _IMP_multifit.FFTFittingOutput_best_trans_per_rot__set)
1520 
1521  def __str__(self):
1522  """__str__(FFTFittingOutput self) -> std::string"""
1523  return _IMP_multifit.FFTFittingOutput___str__(self)
1524 
1525 
1526  def __repr__(self):
1527  """__repr__(FFTFittingOutput self) -> std::string"""
1528  return _IMP_multifit.FFTFittingOutput___repr__(self)
1529 
1530 
1531  @staticmethod
1532  def get_from(o):
1533  return _object_cast_to_FFTFittingOutput(o)
1534 
1535 FFTFittingOutput_swigregister = _IMP_multifit.FFTFittingOutput_swigregister
1536 FFTFittingOutput_swigregister(FFTFittingOutput)
1537 
1538 class FFTFitting(IMP.Object):
1539  """Proxy of C++ IMP::multifit::FFTFitting class."""
1540 
1541  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1542 
1543  def get_version_info(self):
1544  """get_version_info(FFTFitting self) -> VersionInfo"""
1545  return _IMP_multifit.FFTFitting_get_version_info(self)
1546 
1547 
1548  def __init__(self):
1549  """__init__(IMP::multifit::FFTFitting self) -> FFTFitting"""
1550  this = _IMP_multifit.new_FFTFitting()
1551  try:
1552  self.this.append(this)
1553  except Exception:
1554  self.this = this
1555 
1556  def do_global_fitting(self, *args):
1557  """
1558  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=True, int num_angle_per_voxel=1, std::string const & angles_filename) -> FFTFittingOutput
1559  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=True, int num_angle_per_voxel=1) -> FFTFittingOutput
1560  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=True) -> FFTFittingOutput
1561  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle) -> FFTFittingOutput
1562  """
1563  return _IMP_multifit.FFTFitting_do_global_fitting(self, *args)
1564 
1565 
1566  def do_local_fitting(self, *args):
1567  """
1568  do_local_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, double max_angle_sampling_rad, double max_translation, int num_fits_to_report, bool cluster_fits, int num_angle_per_voxel, double max_clustering_translation, double max_clustering_rotation, std::string const & angles_filename) -> FFTFittingOutput
1569  do_local_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, double max_angle_sampling_rad, double max_translation, int num_fits_to_report, bool cluster_fits, int num_angle_per_voxel, double max_clustering_translation, double max_clustering_rotation) -> FFTFittingOutput
1570  """
1571  return _IMP_multifit.FFTFitting_do_local_fitting(self, *args)
1572 
1573 
1574  def __str__(self):
1575  """__str__(FFTFitting self) -> std::string"""
1576  return _IMP_multifit.FFTFitting___str__(self)
1577 
1578 
1579  def __repr__(self):
1580  """__repr__(FFTFitting self) -> std::string"""
1581  return _IMP_multifit.FFTFitting___repr__(self)
1582 
1583 
1584  @staticmethod
1585  def get_from(o):
1586  return _object_cast_to_FFTFitting(o)
1587 
1588 FFTFitting_swigregister = _IMP_multifit.FFTFitting_swigregister
1589 FFTFitting_swigregister(FFTFitting)
1590 
1591 
1592 def fft_based_rigid_fitting(mol2fit, dmap, density_threshold, angle_sampling_interval_rad):
1593  """fft_based_rigid_fitting(Hierarchy mol2fit, DensityMap dmap, double density_threshold, double angle_sampling_interval_rad) -> IMP::multifit::FittingSolutionRecords"""
1594  return _IMP_multifit.fft_based_rigid_fitting(mol2fit, dmap, density_threshold, angle_sampling_interval_rad)
1595 
1596 def remove_background(dmap, threshold, edge_threshold):
1597  """remove_background(DensityMap dmap, float threshold, float edge_threshold) -> DensityMap"""
1598  return _IMP_multifit.remove_background(dmap, threshold, edge_threshold)
1599 
1600 def get_connected_components(dmap, threshold, edge_threshold):
1601  """get_connected_components(DensityMap dmap, float threshold, float edge_threshold) -> IMP::IntsList"""
1602  return _IMP_multifit.get_connected_components(dmap, threshold, edge_threshold)
1603 
1604 def get_segmentation(dmap, apix, density_threshold, num_means, pdb_filename, cmm_filename, seg_filename, txt_filename):
1605  """get_segmentation(DensityMap dmap, double apix, double density_threshold, int num_means, std::string const pdb_filename, std::string const cmm_filename, std::string const seg_filename, std::string const txt_filename)"""
1606  return _IMP_multifit.get_segmentation(dmap, apix, density_threshold, num_means, pdb_filename, cmm_filename, seg_filename, txt_filename)
1607 class ComplementarityRestraint(IMP.Restraint):
1608  """Proxy of C++ IMP::multifit::ComplementarityRestraint class."""
1609 
1610  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1611 
1612  def __init__(self, *args):
1613  """
1614  __init__(IMP::multifit::ComplementarityRestraint self, IMP::ParticlesTemp const & a, IMP::ParticlesTemp const & b, std::string name) -> ComplementarityRestraint
1615  __init__(IMP::multifit::ComplementarityRestraint self, IMP::ParticlesTemp const & a, IMP::ParticlesTemp const & b) -> ComplementarityRestraint
1616  """
1617  this = _IMP_multifit.new_ComplementarityRestraint(*args)
1618  try:
1619  self.this.append(this)
1620  except Exception:
1621  self.this = this
1622 
1623  def set_maximum_penetration_score(self, s):
1624  """set_maximum_penetration_score(ComplementarityRestraint self, double s)"""
1625  return _IMP_multifit.ComplementarityRestraint_set_maximum_penetration_score(self, s)
1626 
1627 
1628  def set_maximum_penetration(self, d):
1629  """set_maximum_penetration(ComplementarityRestraint self, double d)"""
1630  return _IMP_multifit.ComplementarityRestraint_set_maximum_penetration(self, d)
1631 
1632 
1633  def set_maximum_separation(self, s):
1634  """set_maximum_separation(ComplementarityRestraint self, double s)"""
1635  return _IMP_multifit.ComplementarityRestraint_set_maximum_separation(self, s)
1636 
1637 
1638  def set_complementarity_thickness(self, th):
1639  """set_complementarity_thickness(ComplementarityRestraint self, double th)"""
1640  return _IMP_multifit.ComplementarityRestraint_set_complementarity_thickness(self, th)
1641 
1642 
1643  def set_complementarity_value(self, th):
1644  """set_complementarity_value(ComplementarityRestraint self, double th)"""
1645  return _IMP_multifit.ComplementarityRestraint_set_complementarity_value(self, th)
1646 
1647 
1648  def set_interior_layer_thickness(self, th):
1649  """set_interior_layer_thickness(ComplementarityRestraint self, double th)"""
1650  return _IMP_multifit.ComplementarityRestraint_set_interior_layer_thickness(self, th)
1651 
1652 
1653  def set_penetration_coefficient(self, pc):
1654  """set_penetration_coefficient(ComplementarityRestraint self, double pc)"""
1655  return _IMP_multifit.ComplementarityRestraint_set_penetration_coefficient(self, pc)
1656 
1657 
1658  def set_complementarity_coefficient(self, cc):
1659  """set_complementarity_coefficient(ComplementarityRestraint self, double cc)"""
1660  return _IMP_multifit.ComplementarityRestraint_set_complementarity_coefficient(self, cc)
1661 
1662 
1663  def set_boundary_coefficient(self, bc):
1664  """set_boundary_coefficient(ComplementarityRestraint self, double bc)"""
1665  return _IMP_multifit.ComplementarityRestraint_set_boundary_coefficient(self, bc)
1666 
1667 
1668  def get_voxel_size(self):
1669  """get_voxel_size(ComplementarityRestraint self) -> float"""
1670  return _IMP_multifit.ComplementarityRestraint_get_voxel_size(self)
1671 
1672 
1673  def do_get_inputs(self):
1674  """do_get_inputs(ComplementarityRestraint self) -> IMP::ModelObjectsTemp"""
1675  return _IMP_multifit.ComplementarityRestraint_do_get_inputs(self)
1676 
1677 
1678  def get_version_info(self):
1679  """get_version_info(ComplementarityRestraint self) -> VersionInfo"""
1680  return _IMP_multifit.ComplementarityRestraint_get_version_info(self)
1681 
1682 
1683  def __str__(self):
1684  """__str__(ComplementarityRestraint self) -> std::string"""
1685  return _IMP_multifit.ComplementarityRestraint___str__(self)
1686 
1687 
1688  def __repr__(self):
1689  """__repr__(ComplementarityRestraint self) -> std::string"""
1690  return _IMP_multifit.ComplementarityRestraint___repr__(self)
1691 
1692 
1693  @staticmethod
1694  def get_from(o):
1695  return _object_cast_to_ComplementarityRestraint(o)
1696 
1697 ComplementarityRestraint_swigregister = _IMP_multifit.ComplementarityRestraint_swigregister
1698 ComplementarityRestraint_swigregister(ComplementarityRestraint)
1699 
1700 
1701 def read_fitting_solutions(fitting_fn):
1702  """read_fitting_solutions(char const * fitting_fn) -> IMP::multifit::FittingSolutionRecords"""
1703  return _IMP_multifit.read_fitting_solutions(fitting_fn)
1704 
1705 def write_fitting_solutions(fitting_fn, fit_sols, num_sols=-1):
1706  """
1707  write_fitting_solutions(char const * fitting_fn, IMP::multifit::FittingSolutionRecords const & fit_sols, int num_sols=-1)
1708  write_fitting_solutions(char const * fitting_fn, IMP::multifit::FittingSolutionRecords const & fit_sols)
1709  """
1710  return _IMP_multifit.write_fitting_solutions(fitting_fn, fit_sols, num_sols)
1711 
1712 def convert_em_to_multifit_format(em_fits):
1713  """convert_em_to_multifit_format(FittingSolutions em_fits) -> IMP::multifit::FittingSolutionRecords"""
1714  return _IMP_multifit.convert_em_to_multifit_format(em_fits)
1715 
1716 def convert_multifit_to_em_format(multifit_fits):
1717  """convert_multifit_to_em_format(IMP::multifit::FittingSolutionRecords const & multifit_fits) -> FittingSolutions"""
1718  return _IMP_multifit.convert_multifit_to_em_format(multifit_fits)
1719 
1720 def convert_transformations_to_multifit_format(trans):
1721  """convert_transformations_to_multifit_format(IMP::algebra::Transformation3Ds const & trans) -> IMP::multifit::FittingSolutionRecords"""
1722  return _IMP_multifit.convert_transformations_to_multifit_format(trans)
1723 
1724 def convert_multifit_format_to_transformations(recs):
1725  """convert_multifit_format_to_transformations(IMP::multifit::FittingSolutionRecords const & recs) -> IMP::algebra::Transformation3Ds"""
1726  return _IMP_multifit.convert_multifit_format_to_transformations(recs)
1727 
1728 def get_close_to_point(fit_sols, mh, ap, dist):
1729  """get_close_to_point(IMP::multifit::FittingSolutionRecords const & fit_sols, Hierarchy mh, Particle ap, IMP::Float dist) -> IMP::multifit::FittingSolutionRecords"""
1730  return _IMP_multifit.get_close_to_point(fit_sols, mh, ap, dist)
1731 class ProbabilisticAnchorGraph(IMP.Object):
1732  """Proxy of C++ IMP::multifit::ProbabilisticAnchorGraph class."""
1733 
1734  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1735 
1736  def __init__(self, anchor_positions):
1737  """__init__(IMP::multifit::ProbabilisticAnchorGraph self, IMP::algebra::Vector3Ds anchor_positions) -> ProbabilisticAnchorGraph"""
1738  this = _IMP_multifit.new_ProbabilisticAnchorGraph(anchor_positions)
1739  try:
1740  self.this.append(this)
1741  except Exception:
1742  self.this = this
1743 
1744  def add_edge(self, i, j):
1745  """add_edge(ProbabilisticAnchorGraph self, int i, int j)"""
1746  return _IMP_multifit.ProbabilisticAnchorGraph_add_edge(self, i, j)
1747 
1748 
1749  def set_particle_probabilities_on_anchors(self, p, sols):
1750  """set_particle_probabilities_on_anchors(ProbabilisticAnchorGraph self, Particle p, IMP::multifit::FittingSolutionRecords sols)"""
1751  return _IMP_multifit.ProbabilisticAnchorGraph_set_particle_probabilities_on_anchors(self, p, sols)
1752 
1753 
1754  def show(self, *args):
1755  """
1756  show(ProbabilisticAnchorGraph self, _ostream out)
1757  show(ProbabilisticAnchorGraph self)
1758  """
1759  return _IMP_multifit.ProbabilisticAnchorGraph_show(self, *args)
1760 
1761 
1762  def get_number_of_anchors(self):
1763  """get_number_of_anchors(ProbabilisticAnchorGraph self) -> unsigned int"""
1764  return _IMP_multifit.ProbabilisticAnchorGraph_get_number_of_anchors(self)
1765 
1766 
1767  def get_number_of_edges(self):
1768  """get_number_of_edges(ProbabilisticAnchorGraph self) -> unsigned int"""
1769  return _IMP_multifit.ProbabilisticAnchorGraph_get_number_of_edges(self)
1770 
1771 
1772  def get_edge_list(self):
1773  """get_edge_list(ProbabilisticAnchorGraph self) -> IMP::IntRanges"""
1774  return _IMP_multifit.ProbabilisticAnchorGraph_get_edge_list(self)
1775 
1776 
1777  def get_anchors(self):
1778  """get_anchors(ProbabilisticAnchorGraph self) -> IMP::algebra::Vector3Ds"""
1779  return _IMP_multifit.ProbabilisticAnchorGraph_get_anchors(self)
1780 
1781 
1782  def get_particle_anchors(self, p, min_prob=0):
1783  """
1784  get_particle_anchors(ProbabilisticAnchorGraph self, Particle p, float min_prob=0) -> IMP::algebra::Vector3Ds
1785  get_particle_anchors(ProbabilisticAnchorGraph self, Particle p) -> IMP::algebra::Vector3Ds
1786  """
1787  return _IMP_multifit.ProbabilisticAnchorGraph_get_particle_anchors(self, p, min_prob)
1788 
1789 
1790  def get_are_probabilities_for_particle_set(self, p):
1791  """get_are_probabilities_for_particle_set(ProbabilisticAnchorGraph self, Particle p) -> bool"""
1792  return _IMP_multifit.ProbabilisticAnchorGraph_get_are_probabilities_for_particle_set(self, p)
1793 
1794 
1795  def get_particle_probabilities(self, p):
1796  """get_particle_probabilities(ProbabilisticAnchorGraph self, Particle p) -> IMP::Floats"""
1797  return _IMP_multifit.ProbabilisticAnchorGraph_get_particle_probabilities(self, p)
1798 
1799 
1800  def get_version_info(self):
1801  """get_version_info(ProbabilisticAnchorGraph self) -> VersionInfo"""
1802  return _IMP_multifit.ProbabilisticAnchorGraph_get_version_info(self)
1803 
1804 
1805  def __str__(self):
1806  """__str__(ProbabilisticAnchorGraph self) -> std::string"""
1807  return _IMP_multifit.ProbabilisticAnchorGraph___str__(self)
1808 
1809 
1810  def __repr__(self):
1811  """__repr__(ProbabilisticAnchorGraph self) -> std::string"""
1812  return _IMP_multifit.ProbabilisticAnchorGraph___repr__(self)
1813 
1814 
1815  @staticmethod
1816  def get_from(o):
1817  return _object_cast_to_ProbabilisticAnchorGraph(o)
1818 
1819 ProbabilisticAnchorGraph_swigregister = _IMP_multifit.ProbabilisticAnchorGraph_swigregister
1820 ProbabilisticAnchorGraph_swigregister(ProbabilisticAnchorGraph)
1821 
1822 class ProteinRecordData(object):
1823  """Proxy of C++ IMP::multifit::ProteinRecordData class."""
1824 
1825  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1826 
1827  def reset_all(self):
1828  """reset_all(ProteinRecordData self)"""
1829  return _IMP_multifit.ProteinRecordData_reset_all(self)
1830 
1831 
1832  def __init__(self, *args):
1833  """
1834  __init__(IMP::multifit::ProteinRecordData self) -> ProteinRecordData
1835  __init__(IMP::multifit::ProteinRecordData self, std::string const & name) -> ProteinRecordData
1836  __init__(IMP::multifit::ProteinRecordData self, std::string const & name, std::string const fn) -> ProteinRecordData
1837  __init__(IMP::multifit::ProteinRecordData self, std::string const & name, int start_res, int end_res, std::string const fn) -> ProteinRecordData
1838  __init__(IMP::multifit::ProteinRecordData self, std::string const & name, int start_res, int end_res, std::string const & fn, std::string const & surface_fn, std::string const & ref_fn) -> ProteinRecordData
1839  """
1840  this = _IMP_multifit.new_ProteinRecordData(*args)
1841  try:
1842  self.this.append(this)
1843  except Exception:
1844  self.this = this
1845 
1846  def show(self, *args):
1847  """
1848  show(ProteinRecordData self, _ostream out)
1849  show(ProteinRecordData self)
1850  """
1851  return _IMP_multifit.ProteinRecordData_show(self, *args)
1852 
1853  name_ = _swig_property(_IMP_multifit.ProteinRecordData_name__get, _IMP_multifit.ProteinRecordData_name__set)
1854  start_res_ = _swig_property(_IMP_multifit.ProteinRecordData_start_res__get, _IMP_multifit.ProteinRecordData_start_res__set)
1855  end_res_ = _swig_property(_IMP_multifit.ProteinRecordData_end_res__get, _IMP_multifit.ProteinRecordData_end_res__set)
1856  filename_ = _swig_property(_IMP_multifit.ProteinRecordData_filename__get, _IMP_multifit.ProteinRecordData_filename__set)
1857  surface_filename_ = _swig_property(_IMP_multifit.ProteinRecordData_surface_filename__get, _IMP_multifit.ProteinRecordData_surface_filename__set)
1858  ref_filename_ = _swig_property(_IMP_multifit.ProteinRecordData_ref_filename__get, _IMP_multifit.ProteinRecordData_ref_filename__set)
1859 
1860  def __str__(self):
1861  """__str__(ProteinRecordData self) -> std::string"""
1862  return _IMP_multifit.ProteinRecordData___str__(self)
1863 
1864 
1865  def __repr__(self):
1866  """__repr__(ProteinRecordData self) -> std::string"""
1867  return _IMP_multifit.ProteinRecordData___repr__(self)
1868 
1869  __swig_destroy__ = _IMP_multifit.delete_ProteinRecordData
1870  __del__ = lambda self: None
1871 ProteinRecordData_swigregister = _IMP_multifit.ProteinRecordData_swigregister
1872 ProteinRecordData_swigregister(ProteinRecordData)
1873 
1874 class ProteomicsData(IMP.Object):
1875  """Proxy of C++ IMP::multifit::ProteomicsData class."""
1876 
1877  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1878 
1879  def __init__(self):
1880  """__init__(IMP::multifit::ProteomicsData self) -> ProteomicsData"""
1881  this = _IMP_multifit.new_ProteomicsData()
1882  try:
1883  self.this.append(this)
1884  except Exception:
1885  self.this = this
1886 
1887  def add_protein(self, *args):
1888  """
1889  add_protein(ProteomicsData self, std::string name, int start_res, int end_res, std::string const & mol_fn, std::string const & surface_fn, std::string const & ref_fn) -> int
1890  add_protein(ProteomicsData self, ProteinRecordData rec) -> int
1891  """
1892  return _IMP_multifit.ProteomicsData_add_protein(self, *args)
1893 
1894 
1895  def find(self, name):
1896  """find(ProteomicsData self, std::string const & name) -> int"""
1897  return _IMP_multifit.ProteomicsData_find(self, name)
1898 
1899 
1900  def add_interaction(self, ii, used_for_filter, linker_len):
1901  """add_interaction(ProteomicsData self, IMP::Ints const & ii, bool used_for_filter, float linker_len)"""
1902  return _IMP_multifit.ProteomicsData_add_interaction(self, ii, used_for_filter, linker_len)
1903 
1904 
1905  def add_cross_link_interaction(self, prot1, res1, prot2, res2, used_in_filter, linker_len):
1906  """add_cross_link_interaction(ProteomicsData self, IMP::Int prot1, IMP::Int res1, IMP::Int prot2, IMP::Int res2, bool used_in_filter, IMP::Float linker_len)"""
1907  return _IMP_multifit.ProteomicsData_add_cross_link_interaction(self, prot1, res1, prot2, res2, used_in_filter, linker_len)
1908 
1909 
1910  def add_ev_pair(self, prot1, prot2):
1911  """add_ev_pair(ProteomicsData self, IMP::Int prot1, IMP::Int prot2)"""
1912  return _IMP_multifit.ProteomicsData_add_ev_pair(self, prot1, prot2)
1913 
1914 
1915  def get_number_of_proteins(self):
1916  """get_number_of_proteins(ProteomicsData self) -> int"""
1917  return _IMP_multifit.ProteomicsData_get_number_of_proteins(self)
1918 
1919 
1920  def get_number_of_interactions(self):
1921  """get_number_of_interactions(ProteomicsData self) -> int"""
1922  return _IMP_multifit.ProteomicsData_get_number_of_interactions(self)
1923 
1924 
1925  def get_interaction(self, interaction_ind):
1926  """get_interaction(ProteomicsData self, int interaction_ind) -> IMP::Ints"""
1927  return _IMP_multifit.ProteomicsData_get_interaction(self, interaction_ind)
1928 
1929 
1930  def get_interaction_part_of_filter(self, interaction_ind):
1931  """get_interaction_part_of_filter(ProteomicsData self, int interaction_ind) -> bool"""
1932  return _IMP_multifit.ProteomicsData_get_interaction_part_of_filter(self, interaction_ind)
1933 
1934 
1935  def get_interaction_linker_length(self, interaction_ind):
1936  """get_interaction_linker_length(ProteomicsData self, int interaction_ind) -> int"""
1937  return _IMP_multifit.ProteomicsData_get_interaction_linker_length(self, interaction_ind)
1938 
1939 
1940  def get_number_of_cross_links(self):
1941  """get_number_of_cross_links(ProteomicsData self) -> int"""
1942  return _IMP_multifit.ProteomicsData_get_number_of_cross_links(self)
1943 
1944 
1945  def get_cross_link(self, xlink_ind):
1946  """get_cross_link(ProteomicsData self, int xlink_ind) -> std::pair< IMP::IntPair,IMP::IntPair >"""
1947  return _IMP_multifit.ProteomicsData_get_cross_link(self, xlink_ind)
1948 
1949 
1950  def get_cross_link_part_of_filter(self, xlink_ind):
1951  """get_cross_link_part_of_filter(ProteomicsData self, int xlink_ind) -> bool"""
1952  return _IMP_multifit.ProteomicsData_get_cross_link_part_of_filter(self, xlink_ind)
1953 
1954 
1955  def get_cross_link_length(self, xlink_ind):
1956  """get_cross_link_length(ProteomicsData self, int xlink_ind) -> float"""
1957  return _IMP_multifit.ProteomicsData_get_cross_link_length(self, xlink_ind)
1958 
1959 
1960  def get_number_of_ev_pairs(self):
1961  """get_number_of_ev_pairs(ProteomicsData self) -> int"""
1962  return _IMP_multifit.ProteomicsData_get_number_of_ev_pairs(self)
1963 
1964 
1965  def get_ev_pair(self, ev_ind):
1966  """get_ev_pair(ProteomicsData self, int ev_ind) -> IMP::IntPair"""
1967  return _IMP_multifit.ProteomicsData_get_ev_pair(self, ev_ind)
1968 
1969 
1970  def get_protein_name(self, protein_ind):
1971  """get_protein_name(ProteomicsData self, int protein_ind) -> std::string"""
1972  return _IMP_multifit.ProteomicsData_get_protein_name(self, protein_ind)
1973 
1974 
1975  def get_end_res(self, protein_ind):
1976  """get_end_res(ProteomicsData self, int protein_ind) -> int"""
1977  return _IMP_multifit.ProteomicsData_get_end_res(self, protein_ind)
1978 
1979 
1980  def get_start_res(self, protein_ind):
1981  """get_start_res(ProteomicsData self, int protein_ind) -> int"""
1982  return _IMP_multifit.ProteomicsData_get_start_res(self, protein_ind)
1983 
1984 
1985  def get_protein_filename(self, protein_ind):
1986  """get_protein_filename(ProteomicsData self, int protein_ind) -> std::string"""
1987  return _IMP_multifit.ProteomicsData_get_protein_filename(self, protein_ind)
1988 
1989 
1990  def get_reference_filename(self, protein_ind):
1991  """get_reference_filename(ProteomicsData self, int protein_ind) -> std::string"""
1992  return _IMP_multifit.ProteomicsData_get_reference_filename(self, protein_ind)
1993 
1994 
1995  def get_surface_filename(self, protein_ind):
1996  """get_surface_filename(ProteomicsData self, int protein_ind) -> std::string"""
1997  return _IMP_multifit.ProteomicsData_get_surface_filename(self, protein_ind)
1998 
1999 
2000  def get_protein_data(self, protein_ind):
2001  """get_protein_data(ProteomicsData self, int protein_ind) -> ProteinRecordData"""
2002  return _IMP_multifit.ProteomicsData_get_protein_data(self, protein_ind)
2003 
2004 
2005  def get_version_info(self):
2006  """get_version_info(ProteomicsData self) -> VersionInfo"""
2007  return _IMP_multifit.ProteomicsData_get_version_info(self)
2008 
2009 
2010  def get_num_allowed_violated_interactions(self):
2011  """get_num_allowed_violated_interactions(ProteomicsData self) -> int"""
2012  return _IMP_multifit.ProteomicsData_get_num_allowed_violated_interactions(self)
2013 
2014 
2015  def set_num_allowed_violated_interactions(self, n):
2016  """set_num_allowed_violated_interactions(ProteomicsData self, int n)"""
2017  return _IMP_multifit.ProteomicsData_set_num_allowed_violated_interactions(self, n)
2018 
2019 
2020  def get_num_allowed_violated_cross_links(self):
2021  """get_num_allowed_violated_cross_links(ProteomicsData self) -> int"""
2022  return _IMP_multifit.ProteomicsData_get_num_allowed_violated_cross_links(self)
2023 
2024 
2025  def set_num_allowed_violated_cross_links(self, n):
2026  """set_num_allowed_violated_cross_links(ProteomicsData self, int n)"""
2027  return _IMP_multifit.ProteomicsData_set_num_allowed_violated_cross_links(self, n)
2028 
2029 
2030  def get_num_allowed_violated_ev(self):
2031  """get_num_allowed_violated_ev(ProteomicsData self) -> int"""
2032  return _IMP_multifit.ProteomicsData_get_num_allowed_violated_ev(self)
2033 
2034 
2035  def set_num_allowed_violated_ev(self, n):
2036  """set_num_allowed_violated_ev(ProteomicsData self, int n)"""
2037  return _IMP_multifit.ProteomicsData_set_num_allowed_violated_ev(self, n)
2038 
2039 
2040  def __str__(self):
2041  """__str__(ProteomicsData self) -> std::string"""
2042  return _IMP_multifit.ProteomicsData___str__(self)
2043 
2044 
2045  def __repr__(self):
2046  """__repr__(ProteomicsData self) -> std::string"""
2047  return _IMP_multifit.ProteomicsData___repr__(self)
2048 
2049 
2050  @staticmethod
2051  def get_from(o):
2052  return _object_cast_to_ProteomicsData(o)
2053 
2054 ProteomicsData_swigregister = _IMP_multifit.ProteomicsData_swigregister
2055 ProteomicsData_swigregister(ProteomicsData)
2056 
2057 
2058 def read_proteomics_data(proteomics_fn):
2059  """read_proteomics_data(char const * proteomics_fn) -> ProteomicsData"""
2060  return _IMP_multifit.read_proteomics_data(proteomics_fn)
2061 
2062 def get_partial_proteomics_data(pd, prot_names):
2063  """get_partial_proteomics_data(ProteomicsData pd, IMP::Strings const & prot_names) -> ProteomicsData"""
2064  return _IMP_multifit.get_partial_proteomics_data(pd, prot_names)
2065 class AnchorsData(object):
2066  """Proxy of C++ IMP::multifit::AnchorsData class."""
2067 
2068  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2069 
2070  def __init__(self, *args):
2071  """
2072  __init__(IMP::multifit::AnchorsData self) -> AnchorsData
2073  __init__(IMP::multifit::AnchorsData self, IMP::algebra::Vector3Ds points, IMP::IntPairs edges) -> AnchorsData
2074  """
2075  this = _IMP_multifit.new_AnchorsData(*args)
2076  try:
2077  self.this.append(this)
2078  except Exception:
2079  self.this = this
2080 
2081  def remove_edges_for_node(self, node_ind):
2082  """remove_edges_for_node(AnchorsData self, int node_ind)"""
2083  return _IMP_multifit.AnchorsData_remove_edges_for_node(self, node_ind)
2084 
2085 
2086  def get_number_of_points(self):
2087  """get_number_of_points(AnchorsData self) -> int"""
2088  return _IMP_multifit.AnchorsData_get_number_of_points(self)
2089 
2090 
2091  def get_number_of_edges(self):
2092  """get_number_of_edges(AnchorsData self) -> int"""
2093  return _IMP_multifit.AnchorsData_get_number_of_edges(self)
2094 
2095 
2096  def get_is_point_considered(self, node_ind):
2097  """get_is_point_considered(AnchorsData self, int node_ind) -> bool"""
2098  return _IMP_multifit.AnchorsData_get_is_point_considered(self, node_ind)
2099 
2100 
2101  def show(self, *args):
2102  """
2103  show(AnchorsData self, _ostream out)
2104  show(AnchorsData self)
2105  """
2106  return _IMP_multifit.AnchorsData_show(self, *args)
2107 
2108 
2109  def get_secondary_structure_is_set(self):
2110  """get_secondary_structure_is_set(AnchorsData self) -> bool"""
2111  return _IMP_multifit.AnchorsData_get_secondary_structure_is_set(self)
2112 
2113 
2114  def setup_secondary_structure(self, mdl):
2115  """setup_secondary_structure(AnchorsData self, Model mdl)"""
2116  return _IMP_multifit.AnchorsData_setup_secondary_structure(self, mdl)
2117 
2118 
2119  def set_secondary_structure_probabilities(self, *args):
2120  """
2121  set_secondary_structure_probabilities(AnchorsData self, IMP::Particles const & ssres_ps, IMP::Ints const & indices)
2122  set_secondary_structure_probabilities(AnchorsData self, IMP::Particles const & ssres_ps)
2123  """
2124  return _IMP_multifit.AnchorsData_set_secondary_structure_probabilities(self, *args)
2125 
2126 
2127  def get_secondary_structure_particles(self):
2128  """get_secondary_structure_particles(AnchorsData self) -> IMP::Particles"""
2129  return _IMP_multifit.AnchorsData_get_secondary_structure_particles(self)
2130 
2131  points_ = _swig_property(_IMP_multifit.AnchorsData_points__get, _IMP_multifit.AnchorsData_points__set)
2132  consider_point_ = _swig_property(_IMP_multifit.AnchorsData_consider_point__get, _IMP_multifit.AnchorsData_consider_point__set)
2133  edges_ = _swig_property(_IMP_multifit.AnchorsData_edges__get, _IMP_multifit.AnchorsData_edges__set)
2134 
2135  def __str__(self):
2136  """__str__(AnchorsData self) -> std::string"""
2137  return _IMP_multifit.AnchorsData___str__(self)
2138 
2139 
2140  def __repr__(self):
2141  """__repr__(AnchorsData self) -> std::string"""
2142  return _IMP_multifit.AnchorsData___repr__(self)
2143 
2144  __swig_destroy__ = _IMP_multifit.delete_AnchorsData
2145  __del__ = lambda self: None
2146 AnchorsData_swigregister = _IMP_multifit.AnchorsData_swigregister
2147 AnchorsData_swigregister(AnchorsData)
2148 
2149 
2150 def read_anchors_data(txt_filename):
2151  """read_anchors_data(char const * txt_filename) -> AnchorsData"""
2152  return _IMP_multifit.read_anchors_data(txt_filename)
2153 
2154 def write_txt(txt_filename, ad):
2155  """write_txt(std::string const & txt_filename, AnchorsData ad)"""
2156  return _IMP_multifit.write_txt(txt_filename, ad)
2157 
2158 def write_cmm(cmm_filename, marker_set_name, dpa):
2159  """write_cmm(std::string const & cmm_filename, std::string const & marker_set_name, AnchorsData dpa)"""
2160  return _IMP_multifit.write_cmm(cmm_filename, marker_set_name, dpa)
2161 
2162 def create_coarse_molecule_from_density(dmap, dens_threshold, num_beads, mdl, bead_radius):
2163  """create_coarse_molecule_from_density(DensityMap dmap, float dens_threshold, int num_beads, Model mdl, float bead_radius) -> Hierarchy"""
2164  return _IMP_multifit.create_coarse_molecule_from_density(dmap, dens_threshold, num_beads, mdl, bead_radius)
2165 
2166 def create_hit_map(rb, rb_ref, sols, damp):
2167  """create_hit_map(RigidBody rb, Refiner rb_ref, IMP::multifit::FittingSolutionRecords const & sols, DensityMap damp) -> DensityMap"""
2168  return _IMP_multifit.create_hit_map(rb, rb_ref, sols, damp)
2169 
2170 def get_points_close_to_molecule(mh, points, max_dist):
2171  """get_points_close_to_molecule(Hierarchy mh, IMP::algebra::Vector3Ds const points, IMP::Float max_dist) -> IMP::algebra::Vector3Ds"""
2172  return _IMP_multifit.get_points_close_to_molecule(mh, points, max_dist)
2173 
2174 def get_points_far_from_molecule(mh, points, max_dist):
2175  """get_points_far_from_molecule(Hierarchy mh, IMP::algebra::Vector3Ds const points, IMP::Float max_dist) -> IMP::algebra::Vector3Ds"""
2176  return _IMP_multifit.get_points_far_from_molecule(mh, points, max_dist)
2177 class RadiusOfGyrationRestraint(IMP.Restraint):
2178  """Proxy of C++ IMP::multifit::RadiusOfGyrationRestraint class."""
2179 
2180  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2181 
2182  def __init__(self, ps, num_residues, scale=1.):
2183  """
2184  __init__(IMP::multifit::RadiusOfGyrationRestraint self, IMP::Particles ps, int num_residues, IMP::Float scale=1.) -> RadiusOfGyrationRestraint
2185  __init__(IMP::multifit::RadiusOfGyrationRestraint self, IMP::Particles ps, int num_residues) -> RadiusOfGyrationRestraint
2186  """
2187  this = _IMP_multifit.new_RadiusOfGyrationRestraint(ps, num_residues, scale)
2188  try:
2189  self.this.append(this)
2190  except Exception:
2191  self.this = this
2192 
2193  def do_get_inputs(self):
2194  """do_get_inputs(RadiusOfGyrationRestraint self) -> IMP::ModelObjectsTemp"""
2195  return _IMP_multifit.RadiusOfGyrationRestraint_do_get_inputs(self)
2196 
2197 
2198  def get_version_info(self):
2199  """get_version_info(RadiusOfGyrationRestraint self) -> VersionInfo"""
2200  return _IMP_multifit.RadiusOfGyrationRestraint_get_version_info(self)
2201 
2202 
2203  def set_radius_of_gyration(self, r):
2204  """set_radius_of_gyration(RadiusOfGyrationRestraint self, IMP::Float r)"""
2205  return _IMP_multifit.RadiusOfGyrationRestraint_set_radius_of_gyration(self, r)
2206 
2207 
2208  def get_radius_of_gyration(self):
2209  """get_radius_of_gyration(RadiusOfGyrationRestraint self) -> IMP::Float"""
2210  return _IMP_multifit.RadiusOfGyrationRestraint_get_radius_of_gyration(self)
2211 
2212 
2213  def __str__(self):
2214  """__str__(RadiusOfGyrationRestraint self) -> std::string"""
2215  return _IMP_multifit.RadiusOfGyrationRestraint___str__(self)
2216 
2217 
2218  def __repr__(self):
2219  """__repr__(RadiusOfGyrationRestraint self) -> std::string"""
2220  return _IMP_multifit.RadiusOfGyrationRestraint___repr__(self)
2221 
2222 
2223  @staticmethod
2224  def get_from(o):
2225  return _object_cast_to_RadiusOfGyrationRestraint(o)
2226 
2227 RadiusOfGyrationRestraint_swigregister = _IMP_multifit.RadiusOfGyrationRestraint_swigregister
2228 RadiusOfGyrationRestraint_swigregister(RadiusOfGyrationRestraint)
2229 
2230 
2231 def get_approximated_radius_of_gyration(len):
2232  """get_approximated_radius_of_gyration(int len) -> float"""
2233  return _IMP_multifit.get_approximated_radius_of_gyration(len)
2234 
2235 def get_actual_radius_of_gyration(ps):
2236  """get_actual_radius_of_gyration(IMP::ParticlesTemp ps) -> float"""
2237  return _IMP_multifit.get_actual_radius_of_gyration(ps)
2238 
2239 def get_approximated_radius(len):
2240  """get_approximated_radius(int len) -> float"""
2241  return _IMP_multifit.get_approximated_radius(len)
2242 class ProteinsAnchorsSamplingSpace(object):
2243  """Proxy of C++ IMP::multifit::ProteinsAnchorsSamplingSpace class."""
2244 
2245  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2246 
2247  def __init__(self, prots=None):
2248  """
2249  __init__(IMP::multifit::ProteinsAnchorsSamplingSpace self, ProteomicsData prots=None) -> ProteinsAnchorsSamplingSpace
2250  __init__(IMP::multifit::ProteinsAnchorsSamplingSpace self) -> ProteinsAnchorsSamplingSpace
2251  """
2252  this = _IMP_multifit.new_ProteinsAnchorsSamplingSpace(prots)
2253  try:
2254  self.this.append(this)
2255  except Exception:
2256  self.this = this
2257 
2258  def set_anchors(self, data):
2259  """set_anchors(ProteinsAnchorsSamplingSpace self, AnchorsData data)"""
2260  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_anchors(self, data)
2261 
2262 
2263  def get_anchors(self):
2264  """get_anchors(ProteinsAnchorsSamplingSpace self) -> AnchorsData"""
2265  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_anchors(self)
2266 
2267 
2268  def get_anchors_filename(self):
2269  """get_anchors_filename(ProteinsAnchorsSamplingSpace self) -> std::string"""
2270  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_anchors_filename(self)
2271 
2272 
2273  def set_anchors_filename(self, fn):
2274  """set_anchors_filename(ProteinsAnchorsSamplingSpace self, std::string const & fn)"""
2275  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_anchors_filename(self, fn)
2276 
2277 
2278  def get_proteomics_data(self):
2279  """get_proteomics_data(ProteinsAnchorsSamplingSpace self) -> ProteomicsData"""
2280  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_proteomics_data(self)
2281 
2282 
2283  def add_protein(self, rec):
2284  """add_protein(ProteinsAnchorsSamplingSpace self, ProteinRecordData rec)"""
2285  return _IMP_multifit.ProteinsAnchorsSamplingSpace_add_protein(self, rec)
2286 
2287 
2288  def get_paths_for_protein(self, prot_name):
2289  """get_paths_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name) -> IMP::IntsList"""
2290  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_paths_for_protein(self, prot_name)
2291 
2292 
2293  def set_paths_filename_for_protein(self, prot_name, paths_filename):
2294  """set_paths_filename_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name, std::string const & paths_filename)"""
2295  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_paths_filename_for_protein(self, prot_name, paths_filename)
2296 
2297 
2298  def get_paths_filename_for_protein(self, prot_name):
2299  """get_paths_filename_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name) -> std::string"""
2300  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_paths_filename_for_protein(self, prot_name)
2301 
2302 
2303  def set_paths_for_protein(self, prot_name, paths):
2304  """set_paths_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name, IMP::IntsList paths)"""
2305  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_paths_for_protein(self, prot_name, paths)
2306 
2307 
2308  def show(self, *args):
2309  """
2310  show(ProteinsAnchorsSamplingSpace self, _ostream s)
2311  show(ProteinsAnchorsSamplingSpace self)
2312  """
2313  return _IMP_multifit.ProteinsAnchorsSamplingSpace_show(self, *args)
2314 
2315 
2316  def __str__(self):
2317  """__str__(ProteinsAnchorsSamplingSpace self) -> std::string"""
2318  return _IMP_multifit.ProteinsAnchorsSamplingSpace___str__(self)
2319 
2320 
2321  def __repr__(self):
2322  """__repr__(ProteinsAnchorsSamplingSpace self) -> std::string"""
2323  return _IMP_multifit.ProteinsAnchorsSamplingSpace___repr__(self)
2324 
2325  __swig_destroy__ = _IMP_multifit.delete_ProteinsAnchorsSamplingSpace
2326  __del__ = lambda self: None
2327 ProteinsAnchorsSamplingSpace_swigregister = _IMP_multifit.ProteinsAnchorsSamplingSpace_swigregister
2328 ProteinsAnchorsSamplingSpace_swigregister(ProteinsAnchorsSamplingSpace)
2329 
2330 
2331 def read_protein_anchors_mapping(*args):
2332  """
2333  read_protein_anchors_mapping(ProteomicsData prots, std::string const & anchors_prot_map_fn, int max_paths) -> ProteinsAnchorsSamplingSpace
2334  read_protein_anchors_mapping(ProteomicsData prots, std::string const & anchors_prot_map_fn) -> ProteinsAnchorsSamplingSpace
2335  """
2336  return _IMP_multifit.read_protein_anchors_mapping(*args)
2337 
2338 def write_protein_anchors_mapping(*args):
2339  """
2340  write_protein_anchors_mapping(std::string const & anchors_prot_map_fn, std::string const & anchors_fn, std::vector< std::pair< IMP::String,IMP::String >,std::allocator< std::pair< IMP::String,IMP::String > > > const & prot_paths)
2341  write_protein_anchors_mapping(std::string const & anchors_prot_map_fn, ProteinsAnchorsSamplingSpace pa, IMP::Strings const & prot_names)
2342  """
2343  return _IMP_multifit.write_protein_anchors_mapping(*args)
2344 
2345 def get_part_of_sampling_space(prots_ss, prot_names):
2346  """get_part_of_sampling_space(ProteinsAnchorsSamplingSpace prots_ss, IMP::Strings const & prot_names) -> ProteinsAnchorsSamplingSpace"""
2347  return _IMP_multifit.get_part_of_sampling_space(prots_ss, prot_names)
2348 
2349 def get_partial_assembly_setting_data(prots_sd, prot_names):
2350  """get_partial_assembly_setting_data(SettingsData prots_sd, IMP::Strings const & prot_names) -> SettingsData"""
2351  return _IMP_multifit.get_partial_assembly_setting_data(prots_sd, prot_names)
2352 
2353 def read_paths(*args):
2354  """
2355  read_paths(char const * txt_filename, int max_paths) -> IMP::IntsList
2356  read_paths(char const * txt_filename) -> IMP::IntsList
2357  """
2358  return _IMP_multifit.read_paths(*args)
2359 
2360 def write_paths(paths, txt_filename):
2361  """write_paths(IMP::IntsList const & paths, std::string const & txt_filename)"""
2362  return _IMP_multifit.write_paths(paths, txt_filename)
2363 
2364 def molecule2anchors(mh, k):
2365  """molecule2anchors(Hierarchy mh, int k) -> AnchorsData"""
2366  return _IMP_multifit.molecule2anchors(mh, k)
2367 
2368 def get_anchors_for_density(dmap, number_of_means, density_threshold, pdb_filename, cmm_filename, seg_filename, txt_filename):
2369  """get_anchors_for_density(DensityMap dmap, int number_of_means, float density_threshold, std::string pdb_filename, std::string cmm_filename, std::string seg_filename, std::string txt_filename)"""
2370  return _IMP_multifit.get_anchors_for_density(dmap, number_of_means, density_threshold, pdb_filename, cmm_filename, seg_filename, txt_filename)
2371 
2372 def get_anchor_indices_matching_secondary_structure(ad, ssrs, max_rmsd=0.7):
2373  """
2374  get_anchor_indices_matching_secondary_structure(AnchorsData ad, IMP::atom::SecondaryStructureResidues const & ssrs, IMP::Float max_rmsd=0.7) -> IMP::IntsList
2375  get_anchor_indices_matching_secondary_structure(AnchorsData ad, IMP::atom::SecondaryStructureResidues const & ssrs) -> IMP::IntsList
2376  """
2377  return _IMP_multifit.get_anchor_indices_matching_secondary_structure(ad, ssrs, max_rmsd)
2378 class DominoParams(object):
2379  """Proxy of C++ IMP::multifit::DominoParams class."""
2380 
2381  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2382 
2383  def __init__(self):
2384  """__init__(IMP::multifit::DominoParams self) -> DominoParams"""
2385  this = _IMP_multifit.new_DominoParams()
2386  try:
2387  self.this.append(this)
2388  except Exception:
2389  self.this = this
2390 
2391  def add(self, pt):
2392  """add(DominoParams self, boost::property_tree::ptree const & pt)"""
2393  return _IMP_multifit.DominoParams_add(self, pt)
2394 
2395 
2396  def show(self, *args):
2397  """
2398  show(DominoParams self, _ostream s)
2399  show(DominoParams self)
2400  """
2401  return _IMP_multifit.DominoParams_show(self, *args)
2402 
2403  max_value_threshold_ = _swig_property(_IMP_multifit.DominoParams_max_value_threshold__get, _IMP_multifit.DominoParams_max_value_threshold__set)
2404  max_num_states_for_subset_ = _swig_property(_IMP_multifit.DominoParams_max_num_states_for_subset__get, _IMP_multifit.DominoParams_max_num_states_for_subset__set)
2405  max_anchor_penetration_ = _swig_property(_IMP_multifit.DominoParams_max_anchor_penetration__get, _IMP_multifit.DominoParams_max_anchor_penetration__set)
2406  heap_size_ = _swig_property(_IMP_multifit.DominoParams_heap_size__get, _IMP_multifit.DominoParams_heap_size__set)
2407  cache_size_ = _swig_property(_IMP_multifit.DominoParams_cache_size__get, _IMP_multifit.DominoParams_cache_size__set)
2408 
2409  def __str__(self):
2410  """__str__(DominoParams self) -> std::string"""
2411  return _IMP_multifit.DominoParams___str__(self)
2412 
2413 
2414  def __repr__(self):
2415  """__repr__(DominoParams self) -> std::string"""
2416  return _IMP_multifit.DominoParams___repr__(self)
2417 
2418  __swig_destroy__ = _IMP_multifit.delete_DominoParams
2419  __del__ = lambda self: None
2420 DominoParams_swigregister = _IMP_multifit.DominoParams_swigregister
2421 DominoParams_swigregister(DominoParams)
2422 
2423 class XlinkParams(object):
2424  """Proxy of C++ IMP::multifit::XlinkParams class."""
2425 
2426  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2427 
2428  def __init__(self):
2429  """__init__(IMP::multifit::XlinkParams self) -> XlinkParams"""
2430  this = _IMP_multifit.new_XlinkParams()
2431  try:
2432  self.this.append(this)
2433  except Exception:
2434  self.this = this
2435 
2436  def add(self, pt):
2437  """add(XlinkParams self, boost::property_tree::ptree const & pt)"""
2438  return _IMP_multifit.XlinkParams_add(self, pt)
2439 
2440 
2441  def show(self, *args):
2442  """
2443  show(XlinkParams self, _ostream s)
2444  show(XlinkParams self)
2445  """
2446  return _IMP_multifit.XlinkParams_show(self, *args)
2447 
2448  upper_bound_ = _swig_property(_IMP_multifit.XlinkParams_upper_bound__get, _IMP_multifit.XlinkParams_upper_bound__set)
2449  k_ = _swig_property(_IMP_multifit.XlinkParams_k__get, _IMP_multifit.XlinkParams_k__set)
2450  max_xlink_val_ = _swig_property(_IMP_multifit.XlinkParams_max_xlink_val__get, _IMP_multifit.XlinkParams_max_xlink_val__set)
2451  treat_between_residues_ = _swig_property(_IMP_multifit.XlinkParams_treat_between_residues__get, _IMP_multifit.XlinkParams_treat_between_residues__set)
2452 
2453  def __str__(self):
2454  """__str__(XlinkParams self) -> std::string"""
2455  return _IMP_multifit.XlinkParams___str__(self)
2456 
2457 
2458  def __repr__(self):
2459  """__repr__(XlinkParams self) -> std::string"""
2460  return _IMP_multifit.XlinkParams___repr__(self)
2461 
2462  __swig_destroy__ = _IMP_multifit.delete_XlinkParams
2463  __del__ = lambda self: None
2464 XlinkParams_swigregister = _IMP_multifit.XlinkParams_swigregister
2465 XlinkParams_swigregister(XlinkParams)
2466 
2467 class ConnectivityParams(object):
2468  """Proxy of C++ IMP::multifit::ConnectivityParams class."""
2469 
2470  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2471 
2472  def __init__(self):
2473  """__init__(IMP::multifit::ConnectivityParams self) -> ConnectivityParams"""
2474  this = _IMP_multifit.new_ConnectivityParams()
2475  try:
2476  self.this.append(this)
2477  except Exception:
2478  self.this = this
2479 
2480  def add(self, pt):
2481  """add(ConnectivityParams self, boost::property_tree::ptree const & pt)"""
2482  return _IMP_multifit.ConnectivityParams_add(self, pt)
2483 
2484 
2485  def show(self, *args):
2486  """
2487  show(ConnectivityParams self, _ostream s)
2488  show(ConnectivityParams self)
2489  """
2490  return _IMP_multifit.ConnectivityParams_show(self, *args)
2491 
2492  upper_bound_ = _swig_property(_IMP_multifit.ConnectivityParams_upper_bound__get, _IMP_multifit.ConnectivityParams_upper_bound__set)
2493  k_ = _swig_property(_IMP_multifit.ConnectivityParams_k__get, _IMP_multifit.ConnectivityParams_k__set)
2494  max_conn_rest_val_ = _swig_property(_IMP_multifit.ConnectivityParams_max_conn_rest_val__get, _IMP_multifit.ConnectivityParams_max_conn_rest_val__set)
2495 
2496  def __str__(self):
2497  """__str__(ConnectivityParams self) -> std::string"""
2498  return _IMP_multifit.ConnectivityParams___str__(self)
2499 
2500 
2501  def __repr__(self):
2502  """__repr__(ConnectivityParams self) -> std::string"""
2503  return _IMP_multifit.ConnectivityParams___repr__(self)
2504 
2505  __swig_destroy__ = _IMP_multifit.delete_ConnectivityParams
2506  __del__ = lambda self: None
2507 ConnectivityParams_swigregister = _IMP_multifit.ConnectivityParams_swigregister
2508 ConnectivityParams_swigregister(ConnectivityParams)
2509 
2510 class FragmentsParams(object):
2511  """Proxy of C++ IMP::multifit::FragmentsParams class."""
2512 
2513  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2514 
2515  def __init__(self):
2516  """__init__(IMP::multifit::FragmentsParams self) -> FragmentsParams"""
2517  this = _IMP_multifit.new_FragmentsParams()
2518  try:
2519  self.this.append(this)
2520  except Exception:
2521  self.this = this
2522 
2523  def add(self, pt):
2524  """add(FragmentsParams self, boost::property_tree::ptree const & pt)"""
2525  return _IMP_multifit.FragmentsParams_add(self, pt)
2526 
2527 
2528  def show(self, *args):
2529  """
2530  show(FragmentsParams self, _ostream s)
2531  show(FragmentsParams self)
2532  """
2533  return _IMP_multifit.FragmentsParams_show(self, *args)
2534 
2535  frag_len_ = _swig_property(_IMP_multifit.FragmentsParams_frag_len__get, _IMP_multifit.FragmentsParams_frag_len__set)
2536  bead_radius_scale_ = _swig_property(_IMP_multifit.FragmentsParams_bead_radius_scale__get, _IMP_multifit.FragmentsParams_bead_radius_scale__set)
2537  load_atomic_ = _swig_property(_IMP_multifit.FragmentsParams_load_atomic__get, _IMP_multifit.FragmentsParams_load_atomic__set)
2538  subunit_rigid_ = _swig_property(_IMP_multifit.FragmentsParams_subunit_rigid__get, _IMP_multifit.FragmentsParams_subunit_rigid__set)
2539 
2540  def __str__(self):
2541  """__str__(FragmentsParams self) -> std::string"""
2542  return _IMP_multifit.FragmentsParams___str__(self)
2543 
2544 
2545  def __repr__(self):
2546  """__repr__(FragmentsParams self) -> std::string"""
2547  return _IMP_multifit.FragmentsParams___repr__(self)
2548 
2549  __swig_destroy__ = _IMP_multifit.delete_FragmentsParams
2550  __del__ = lambda self: None
2551 FragmentsParams_swigregister = _IMP_multifit.FragmentsParams_swigregister
2552 FragmentsParams_swigregister(FragmentsParams)
2553 
2554 class RogParams(object):
2555  """Proxy of C++ IMP::multifit::RogParams class."""
2556 
2557  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2558 
2559  def __init__(self):
2560  """__init__(IMP::multifit::RogParams self) -> RogParams"""
2561  this = _IMP_multifit.new_RogParams()
2562  try:
2563  self.this.append(this)
2564  except Exception:
2565  self.this = this
2566 
2567  def add(self, pt):
2568  """add(RogParams self, boost::property_tree::ptree const & pt)"""
2569  return _IMP_multifit.RogParams_add(self, pt)
2570 
2571 
2572  def get_max_score(self):
2573  """get_max_score(RogParams self) -> float"""
2574  return _IMP_multifit.RogParams_get_max_score(self)
2575 
2576 
2577  def get_scale(self):
2578  """get_scale(RogParams self) -> float"""
2579  return _IMP_multifit.RogParams_get_scale(self)
2580 
2581 
2582  def show(self, *args):
2583  """
2584  show(RogParams self, _ostream s)
2585  show(RogParams self)
2586  """
2587  return _IMP_multifit.RogParams_show(self, *args)
2588 
2589 
2590  def __str__(self):
2591  """__str__(RogParams self) -> std::string"""
2592  return _IMP_multifit.RogParams___str__(self)
2593 
2594 
2595  def __repr__(self):
2596  """__repr__(RogParams self) -> std::string"""
2597  return _IMP_multifit.RogParams___repr__(self)
2598 
2599  __swig_destroy__ = _IMP_multifit.delete_RogParams
2600  __del__ = lambda self: None
2601 RogParams_swigregister = _IMP_multifit.RogParams_swigregister
2602 RogParams_swigregister(RogParams)
2603 
2604 class EVParams(object):
2605  """Proxy of C++ IMP::multifit::EVParams class."""
2606 
2607  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2608 
2609  def __init__(self):
2610  """__init__(IMP::multifit::EVParams self) -> EVParams"""
2611  this = _IMP_multifit.new_EVParams()
2612  try:
2613  self.this.append(this)
2614  except Exception:
2615  self.this = this
2616 
2617  def add(self, pt):
2618  """add(EVParams self, boost::property_tree::ptree const & pt)"""
2619  return _IMP_multifit.EVParams_add(self, pt)
2620 
2621 
2622  def show(self, *args):
2623  """
2624  show(EVParams self, _ostream s)
2625  show(EVParams self)
2626  """
2627  return _IMP_multifit.EVParams_show(self, *args)
2628 
2629  pair_distance_ = _swig_property(_IMP_multifit.EVParams_pair_distance__get, _IMP_multifit.EVParams_pair_distance__set)
2630  pair_slack_ = _swig_property(_IMP_multifit.EVParams_pair_slack__get, _IMP_multifit.EVParams_pair_slack__set)
2631  hlb_mean_ = _swig_property(_IMP_multifit.EVParams_hlb_mean__get, _IMP_multifit.EVParams_hlb_mean__set)
2632  hlb_k_ = _swig_property(_IMP_multifit.EVParams_hlb_k__get, _IMP_multifit.EVParams_hlb_k__set)
2633  maximum_ev_score_for_pair_ = _swig_property(_IMP_multifit.EVParams_maximum_ev_score_for_pair__get, _IMP_multifit.EVParams_maximum_ev_score_for_pair__set)
2634  allowed_percentage_of_bad_pairs_ = _swig_property(_IMP_multifit.EVParams_allowed_percentage_of_bad_pairs__get, _IMP_multifit.EVParams_allowed_percentage_of_bad_pairs__set)
2635  scoring_mode_ = _swig_property(_IMP_multifit.EVParams_scoring_mode__get, _IMP_multifit.EVParams_scoring_mode__set)
2636 
2637  def __str__(self):
2638  """__str__(EVParams self) -> std::string"""
2639  return _IMP_multifit.EVParams___str__(self)
2640 
2641 
2642  def __repr__(self):
2643  """__repr__(EVParams self) -> std::string"""
2644  return _IMP_multifit.EVParams___repr__(self)
2645 
2646  __swig_destroy__ = _IMP_multifit.delete_EVParams
2647  __del__ = lambda self: None
2648 EVParams_swigregister = _IMP_multifit.EVParams_swigregister
2649 EVParams_swigregister(EVParams)
2650 
2651 class FiltersParams(object):
2652  """Proxy of C++ IMP::multifit::FiltersParams class."""
2653 
2654  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2655 
2656  def __init__(self):
2657  """__init__(IMP::multifit::FiltersParams self) -> FiltersParams"""
2658  this = _IMP_multifit.new_FiltersParams()
2659  try:
2660  self.this.append(this)
2661  except Exception:
2662  self.this = this
2663 
2664  def add(self, pt):
2665  """add(FiltersParams self, boost::property_tree::ptree const & pt)"""
2666  return _IMP_multifit.FiltersParams_add(self, pt)
2667 
2668 
2669  def show(self, *args):
2670  """
2671  show(FiltersParams self, _ostream s)
2672  show(FiltersParams self)
2673  """
2674  return _IMP_multifit.FiltersParams_show(self, *args)
2675 
2676  max_num_violated_xlink_ = _swig_property(_IMP_multifit.FiltersParams_max_num_violated_xlink__get, _IMP_multifit.FiltersParams_max_num_violated_xlink__set)
2677  max_num_violated_conn_ = _swig_property(_IMP_multifit.FiltersParams_max_num_violated_conn__get, _IMP_multifit.FiltersParams_max_num_violated_conn__set)
2678  max_num_violated_ev_ = _swig_property(_IMP_multifit.FiltersParams_max_num_violated_ev__get, _IMP_multifit.FiltersParams_max_num_violated_ev__set)
2679 
2680  def __str__(self):
2681  """__str__(FiltersParams self) -> std::string"""
2682  return _IMP_multifit.FiltersParams___str__(self)
2683 
2684 
2685  def __repr__(self):
2686  """__repr__(FiltersParams self) -> std::string"""
2687  return _IMP_multifit.FiltersParams___repr__(self)
2688 
2689  __swig_destroy__ = _IMP_multifit.delete_FiltersParams
2690  __del__ = lambda self: None
2691 FiltersParams_swigregister = _IMP_multifit.FiltersParams_swigregister
2692 FiltersParams_swigregister(FiltersParams)
2693 
2694 class FittingParams(object):
2695  """Proxy of C++ IMP::multifit::FittingParams class."""
2696 
2697  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2698 
2699  def __init__(self):
2700  """__init__(IMP::multifit::FittingParams self) -> FittingParams"""
2701  this = _IMP_multifit.new_FittingParams()
2702  try:
2703  self.this.append(this)
2704  except Exception:
2705  self.this = this
2706 
2707  def add(self, pt):
2708  """add(FittingParams self, boost::property_tree::ptree const & pt)"""
2709  return _IMP_multifit.FittingParams_add(self, pt)
2710 
2711 
2712  def show(self, *args):
2713  """
2714  show(FittingParams self, _ostream s)
2715  show(FittingParams self)
2716  """
2717  return _IMP_multifit.FittingParams_show(self, *args)
2718 
2719  pca_max_angle_diff_ = _swig_property(_IMP_multifit.FittingParams_pca_max_angle_diff__get, _IMP_multifit.FittingParams_pca_max_angle_diff__set)
2720  pca_max_size_diff_ = _swig_property(_IMP_multifit.FittingParams_pca_max_size_diff__get, _IMP_multifit.FittingParams_pca_max_size_diff__set)
2721  pca_max_cent_dist_diff_ = _swig_property(_IMP_multifit.FittingParams_pca_max_cent_dist_diff__get, _IMP_multifit.FittingParams_pca_max_cent_dist_diff__set)
2722  max_asmb_fit_score_ = _swig_property(_IMP_multifit.FittingParams_max_asmb_fit_score__get, _IMP_multifit.FittingParams_max_asmb_fit_score__set)
2723 
2724  def __str__(self):
2725  """__str__(FittingParams self) -> std::string"""
2726  return _IMP_multifit.FittingParams___str__(self)
2727 
2728 
2729  def __repr__(self):
2730  """__repr__(FittingParams self) -> std::string"""
2731  return _IMP_multifit.FittingParams___repr__(self)
2732 
2733  __swig_destroy__ = _IMP_multifit.delete_FittingParams
2734  __del__ = lambda self: None
2735 FittingParams_swigregister = _IMP_multifit.FittingParams_swigregister
2736 FittingParams_swigregister(FittingParams)
2737 
2738 class ComplementarityParams(object):
2739  """Proxy of C++ IMP::multifit::ComplementarityParams class."""
2740 
2741  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2742 
2743  def __init__(self):
2744  """__init__(IMP::multifit::ComplementarityParams self) -> ComplementarityParams"""
2745  this = _IMP_multifit.new_ComplementarityParams()
2746  try:
2747  self.this.append(this)
2748  except Exception:
2749  self.this = this
2750 
2751  def add(self, pt):
2752  """add(ComplementarityParams self, boost::property_tree::ptree const & pt)"""
2753  return _IMP_multifit.ComplementarityParams_add(self, pt)
2754 
2755 
2756  def show(self, *args):
2757  """
2758  show(ComplementarityParams self, _ostream s)
2759  show(ComplementarityParams self)
2760  """
2761  return _IMP_multifit.ComplementarityParams_show(self, *args)
2762 
2763  max_score_ = _swig_property(_IMP_multifit.ComplementarityParams_max_score__get, _IMP_multifit.ComplementarityParams_max_score__set)
2764  max_penetration_ = _swig_property(_IMP_multifit.ComplementarityParams_max_penetration__get, _IMP_multifit.ComplementarityParams_max_penetration__set)
2765  interior_layer_thickness_ = _swig_property(_IMP_multifit.ComplementarityParams_interior_layer_thickness__get, _IMP_multifit.ComplementarityParams_interior_layer_thickness__set)
2766  boundary_coef_ = _swig_property(_IMP_multifit.ComplementarityParams_boundary_coef__get, _IMP_multifit.ComplementarityParams_boundary_coef__set)
2767  comp_coef_ = _swig_property(_IMP_multifit.ComplementarityParams_comp_coef__get, _IMP_multifit.ComplementarityParams_comp_coef__set)
2768  penetration_coef_ = _swig_property(_IMP_multifit.ComplementarityParams_penetration_coef__get, _IMP_multifit.ComplementarityParams_penetration_coef__set)
2769 
2770  def __str__(self):
2771  """__str__(ComplementarityParams self) -> std::string"""
2772  return _IMP_multifit.ComplementarityParams___str__(self)
2773 
2774 
2775  def __repr__(self):
2776  """__repr__(ComplementarityParams self) -> std::string"""
2777  return _IMP_multifit.ComplementarityParams___repr__(self)
2778 
2779  __swig_destroy__ = _IMP_multifit.delete_ComplementarityParams
2780  __del__ = lambda self: None
2781 ComplementarityParams_swigregister = _IMP_multifit.ComplementarityParams_swigregister
2782 ComplementarityParams_swigregister(ComplementarityParams)
2783 
2784 class AlignmentParams(object):
2785  """Proxy of C++ IMP::multifit::AlignmentParams class."""
2786 
2787  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2788 
2789  def __init__(self, param_filename):
2790  """__init__(IMP::multifit::AlignmentParams self, char const * param_filename) -> AlignmentParams"""
2791  this = _IMP_multifit.new_AlignmentParams(param_filename)
2792  try:
2793  self.this.append(this)
2794  except Exception:
2795  self.this = this
2796 
2797  def get_domino_params(self):
2798  """get_domino_params(AlignmentParams self) -> DominoParams"""
2799  return _IMP_multifit.AlignmentParams_get_domino_params(self)
2800 
2801 
2802  def get_fitting_params(self):
2803  """get_fitting_params(AlignmentParams self) -> FittingParams"""
2804  return _IMP_multifit.AlignmentParams_get_fitting_params(self)
2805 
2806 
2807  def get_complementarity_params(self):
2808  """get_complementarity_params(AlignmentParams self) -> ComplementarityParams"""
2809  return _IMP_multifit.AlignmentParams_get_complementarity_params(self)
2810 
2811 
2812  def get_xlink_params(self):
2813  """get_xlink_params(AlignmentParams self) -> XlinkParams"""
2814  return _IMP_multifit.AlignmentParams_get_xlink_params(self)
2815 
2816 
2817  def get_connectivity_params(self):
2818  """get_connectivity_params(AlignmentParams self) -> ConnectivityParams"""
2819  return _IMP_multifit.AlignmentParams_get_connectivity_params(self)
2820 
2821 
2822  def get_rog_params(self):
2823  """get_rog_params(AlignmentParams self) -> RogParams"""
2824  return _IMP_multifit.AlignmentParams_get_rog_params(self)
2825 
2826 
2827  def get_fragments_params(self):
2828  """get_fragments_params(AlignmentParams self) -> FragmentsParams"""
2829  return _IMP_multifit.AlignmentParams_get_fragments_params(self)
2830 
2831 
2832  def get_filters_params(self):
2833  """get_filters_params(AlignmentParams self) -> FiltersParams"""
2834  return _IMP_multifit.AlignmentParams_get_filters_params(self)
2835 
2836 
2837  def get_ev_params(self):
2838  """get_ev_params(AlignmentParams self) -> EVParams"""
2839  return _IMP_multifit.AlignmentParams_get_ev_params(self)
2840 
2841 
2842  def show(self, *args):
2843  """
2844  show(AlignmentParams self, _ostream s)
2845  show(AlignmentParams self)
2846  """
2847  return _IMP_multifit.AlignmentParams_show(self, *args)
2848 
2849 
2850  def __str__(self):
2851  """__str__(AlignmentParams self) -> std::string"""
2852  return _IMP_multifit.AlignmentParams___str__(self)
2853 
2854 
2855  def __repr__(self):
2856  """__repr__(AlignmentParams self) -> std::string"""
2857  return _IMP_multifit.AlignmentParams___repr__(self)
2858 
2859  __swig_destroy__ = _IMP_multifit.delete_AlignmentParams
2860  __del__ = lambda self: None
2861 AlignmentParams_swigregister = _IMP_multifit.AlignmentParams_swigregister
2862 AlignmentParams_swigregister(AlignmentParams)
2863 
2864 class ProteomicsEMAlignmentAtomic(IMP.Object):
2865  """Proxy of C++ IMP::multifit::ProteomicsEMAlignmentAtomic class."""
2866 
2867  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2868 
2869  def __init__(self, mapping_data, asmb_data, align_param):
2870  """__init__(IMP::multifit::ProteomicsEMAlignmentAtomic self, ProteinsAnchorsSamplingSpace mapping_data, SettingsData asmb_data, AlignmentParams align_param) -> ProteomicsEMAlignmentAtomic"""
2871  this = _IMP_multifit.new_ProteomicsEMAlignmentAtomic(mapping_data, asmb_data, align_param)
2872  try:
2873  self.this.append(this)
2874  except Exception:
2875  self.this = this
2876 
2877  def align(self):
2878  """align(ProteomicsEMAlignmentAtomic self)"""
2879  return _IMP_multifit.ProteomicsEMAlignmentAtomic_align(self)
2880 
2881 
2882  def add_all_restraints(self):
2883  """add_all_restraints(ProteomicsEMAlignmentAtomic self)"""
2884  return _IMP_multifit.ProteomicsEMAlignmentAtomic_add_all_restraints(self)
2885 
2886 
2887  def get_restraint_set(self):
2888  """get_restraint_set(ProteomicsEMAlignmentAtomic self) -> RestraintSet"""
2889  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_restraint_set(self)
2890 
2891 
2892  def add_states_and_filters(self):
2893  """add_states_and_filters(ProteomicsEMAlignmentAtomic self)"""
2894  return _IMP_multifit.ProteomicsEMAlignmentAtomic_add_states_and_filters(self)
2895 
2896 
2897  def show_domino_merge_tree(self):
2898  """show_domino_merge_tree(ProteomicsEMAlignmentAtomic self)"""
2899  return _IMP_multifit.ProteomicsEMAlignmentAtomic_show_domino_merge_tree(self)
2900 
2901 
2902  def get_combinations(self, uniques=False):
2903  """
2904  get_combinations(ProteomicsEMAlignmentAtomic self, bool uniques=False) -> IMP::domino::Assignments
2905  get_combinations(ProteomicsEMAlignmentAtomic self) -> IMP::domino::Assignments
2906  """
2907  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_combinations(self, uniques)
2908 
2909 
2910  def set_density_map(self, dmap, threshold):
2911  """set_density_map(ProteomicsEMAlignmentAtomic self, DensityMap dmap, float threshold)"""
2912  return _IMP_multifit.ProteomicsEMAlignmentAtomic_set_density_map(self, dmap, threshold)
2913 
2914 
2915  def get_molecules(self):
2916  """get_molecules(ProteomicsEMAlignmentAtomic self) -> IMP::atom::Hierarchies"""
2917  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_molecules(self)
2918 
2919 
2920  def get_rigid_bodies(self):
2921  """get_rigid_bodies(ProteomicsEMAlignmentAtomic self) -> IMP::core::RigidBodies"""
2922  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_rigid_bodies(self)
2923 
2924 
2925  def load_combination_of_states(self, state4particles):
2926  """load_combination_of_states(ProteomicsEMAlignmentAtomic self, IMP::Ints const & state4particles)"""
2927  return _IMP_multifit.ProteomicsEMAlignmentAtomic_load_combination_of_states(self, state4particles)
2928 
2929 
2930  def show_scores_header(self, *args):
2931  """
2932  show_scores_header(ProteomicsEMAlignmentAtomic self, _ostream ous)
2933  show_scores_header(ProteomicsEMAlignmentAtomic self)
2934  """
2935  return _IMP_multifit.ProteomicsEMAlignmentAtomic_show_scores_header(self, *args)
2936 
2937 
2938  def get_model(self):
2939  """get_model(ProteomicsEMAlignmentAtomic self) -> Model"""
2940  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_model(self)
2941 
2942 
2943  def set_fast_scoring(self, state):
2944  """set_fast_scoring(ProteomicsEMAlignmentAtomic self, bool state)"""
2945  return _IMP_multifit.ProteomicsEMAlignmentAtomic_set_fast_scoring(self, state)
2946 
2947 
2948  def get_version_info(self):
2949  """get_version_info(ProteomicsEMAlignmentAtomic self) -> VersionInfo"""
2950  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_version_info(self)
2951 
2952 
2953  def __str__(self):
2954  """__str__(ProteomicsEMAlignmentAtomic self) -> std::string"""
2955  return _IMP_multifit.ProteomicsEMAlignmentAtomic___str__(self)
2956 
2957 
2958  def __repr__(self):
2959  """__repr__(ProteomicsEMAlignmentAtomic self) -> std::string"""
2960  return _IMP_multifit.ProteomicsEMAlignmentAtomic___repr__(self)
2961 
2962 
2963  @staticmethod
2964  def get_from(o):
2965  return _object_cast_to_ProteomicsEMAlignmentAtomic(o)
2966 
2967 ProteomicsEMAlignmentAtomic_swigregister = _IMP_multifit.ProteomicsEMAlignmentAtomic_swigregister
2968 ProteomicsEMAlignmentAtomic_swigregister(ProteomicsEMAlignmentAtomic)
2969 
2970 
2971 def write_connolly_surface(atoms, fn, density, probe_radius):
2972  """write_connolly_surface(IMP::atom::Atoms atoms, TextOutput fn, float density, float probe_radius)"""
2973  return _IMP_multifit.write_connolly_surface(atoms, fn, density, probe_radius)
2974 class Ensemble(IMP.Object):
2975  """Proxy of C++ IMP::multifit::Ensemble class."""
2976 
2977  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2978 
2979  def load_combination(self, fit_comb):
2980  """load_combination(Ensemble self, IMP::Ints fit_comb)"""
2981  return _IMP_multifit.Ensemble_load_combination(self, fit_comb)
2982 
2983 
2984  def unload_combination(self, fit_comb):
2985  """unload_combination(Ensemble self, IMP::Ints fit_comb)"""
2986  return _IMP_multifit.Ensemble_unload_combination(self, fit_comb)
2987 
2988 
2989  def add_component_and_fits(self, mh, fits):
2990  """add_component_and_fits(Ensemble self, Hierarchy mh, IMP::multifit::FittingSolutionRecords const & fits)"""
2991  return _IMP_multifit.Ensemble_add_component_and_fits(self, mh, fits)
2992 
2993 
2994  def get_molecules(self):
2995  """get_molecules(Ensemble self) -> IMP::atom::Hierarchies"""
2996  return _IMP_multifit.Ensemble_get_molecules(self)
2997 
2998 
2999  def get_rigid_bodies(self):
3000  """get_rigid_bodies(Ensemble self) -> IMP::core::RigidBodies"""
3001  return _IMP_multifit.Ensemble_get_rigid_bodies(self)
3002 
3003 
3004  def get_rmsd(self, second_xyz):
3005  """get_rmsd(Ensemble self, IMP::core::XYZs const & second_xyz) -> float"""
3006  return _IMP_multifit.Ensemble_get_rmsd(self, second_xyz)
3007 
3008 
3009  def __init__(self, sd, mapping_data):
3010  """__init__(IMP::multifit::Ensemble self, SettingsData sd, ProteinsAnchorsSamplingSpace mapping_data) -> Ensemble"""
3011  this = _IMP_multifit.new_Ensemble(sd, mapping_data)
3012  try:
3013  self.this.append(this)
3014  except Exception:
3015  self.this = this
3016 
3017  def score_by_restraints(self, rs, combinations):
3018  """score_by_restraints(Ensemble self, IMP::Restraints rs, IMP::IntsList const & combinations) -> std::vector< IMP::Floats,std::allocator< IMP::Floats > >"""
3019  return _IMP_multifit.Ensemble_score_by_restraints(self, rs, combinations)
3020 
3021 
3022  def get_version_info(self):
3023  """get_version_info(Ensemble self) -> VersionInfo"""
3024  return _IMP_multifit.Ensemble_get_version_info(self)
3025 
3026 
3027  def __str__(self):
3028  """__str__(Ensemble self) -> std::string"""
3029  return _IMP_multifit.Ensemble___str__(self)
3030 
3031 
3032  def __repr__(self):
3033  """__repr__(Ensemble self) -> std::string"""
3034  return _IMP_multifit.Ensemble___repr__(self)
3035 
3036 
3037  @staticmethod
3038  def get_from(o):
3039  return _object_cast_to_Ensemble(o)
3040 
3041 Ensemble_swigregister = _IMP_multifit.Ensemble_swigregister
3042 Ensemble_swigregister(Ensemble)
3043 
3044 
3045 def load_ensemble(sd, mdl, mapping_data):
3046  """load_ensemble(SettingsData sd, Model mdl, ProteinsAnchorsSamplingSpace mapping_data) -> Ensemble"""
3047  return _IMP_multifit.load_ensemble(sd, mdl, mapping_data)
3048 
3049 _all_commands = ["param", "anchors", "fit_fft", "cluster", "add_fit_rmsd",
3050  "indexes", "proteomics", "align", "models", "transforms",
3051  "score", "merge_tree", "reference", "refine_fft", "segment"]
3052 
3053 
3054 def get_module_version():
3055  """get_module_version() -> std::string const"""
3056  return _IMP_multifit.get_module_version()
3057 
3058 def get_example_path(fname):
3059  """get_example_path(std::string fname) -> std::string"""
3060  return _IMP_multifit.get_example_path(fname)
3061 
3062 def get_data_path(fname):
3063  """get_data_path(std::string fname) -> std::string"""
3064  return _IMP_multifit.get_data_path(fname)
3065 
3066 from . import _version_check
3067 _version_check.check_version(get_module_version())
3068 __version__ = get_module_version()
3069 
3070 
3071 
IMP::multifit::get_anchor_indices_matching_secondary_structure
IntsList get_anchor_indices_matching_secondary_structure(const AnchorsData &ad, const atom::SecondaryStructureResidues &ssrs, Float max_rmsd=0.7)
Get lists of anchors that match a sequence of secondary structures.
IMP::multifit::get_close_to_point
FittingSolutionRecords get_close_to_point(const FittingSolutionRecords &fit_sols, atom::Hierarchy mh, IMP::Particle *ap, Float dist)
prune solutions by distance to an anchor point
IMP::modeller::get_example_path
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
IMP::multifit::get_connected_components
IntsList get_connected_components(em::DensityMap *dmap, float threshold, float edge_threshold)
Return connected components based on density values.
IMP::container
Various classes to hold sets of particles.
IMP::cgal
Make CGAL functionality available to IMP.
IMP::multifit::remove_background
em::DensityMap * remove_background(em::DensityMap *dmap, float threshold, float edge_threshold)
Returns a map containing all density without the background.
IMP::multifit::get_part_of_sampling_space
ProteinsAnchorsSamplingSpace get_part_of_sampling_space(const ProteinsAnchorsSamplingSpace &prots_ss, const Strings &prot_names)
Get the sampling space of few of the proteins.
IMP::modeller::get_data_path
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
IMP::multifit::get_partial_assembly_setting_data
multifit::SettingsData * get_partial_assembly_setting_data(multifit::SettingsData *prots_sd, const Strings &prot_names)
Get the assembly data for a few of the proteins.
IMP::score_functor
Composable functors to implement scores via compile-time composition.
IMP::multifit::pca_based_rigid_fitting
em::FittingSolutions pca_based_rigid_fitting(core::RigidBody rb, Refiner *rb_refiner, em::DensityMap *em_map, Float threshold, FloatKey wei_key=atom::Mass::get_mass_key(), algebra::PrincipalComponentAnalysis dens_pca_input=algebra::PrincipalComponentAnalysis())
Compute fitting scores for a given set of rigid transformations.
IMP::statistics
Code to compute statistical measures.
IMP::multifit::add_surface_index
void add_surface_index(core::Hierarchy mhd, Float apix, FloatKey shell_key=FloatKey("surf_ind"), FloatKey radius_key=core::XYZR::get_radius_key(), FloatKey weight_key=atom::Mass::get_mass_key())
Add shell index to leaves.
IMP::domino::get_index
Ints get_index(const ParticlesTemp &particles, const Subset &subset, const Subsets &excluded)
IMP::Object
Common base class for heavy weight IMP objects.
Definition: Object.h:106
IMP::multifit::get_anchors_for_density
void get_anchors_for_density(em::DensityMap *dmap, int number_of_means, float density_threshold, std::string pdb_filename, std::string cmm_filename, std::string seg_filename, std::string txt_filename)
Generate anchors in several formats for a given density map.
IMP::algebra::get_rmsd
double get_rmsd(const Vector3DsOrXYZs0 &m1, const Vector3DsOrXYZs1 &m2)
Definition: algebra/distance.h:47
IMP::algebra::get_radius_of_gyration
double get_radius_of_gyration(const Vector3Ds &ps)
Return the radius of gyration of a set of points.
Definition: Vector3D.h:65
IMP::em
Basic utilities for handling cryo-electron microscopy 3D density maps.
IMP::multifit::write_fitting_solutions
void write_fitting_solutions(const char *fitting_fn, const FittingSolutionRecords &fit_sols, int num_sols=-1)
Write fitting solutions to a file.
IMP::multifit::read_proteomics_data
ProteomicsData * read_proteomics_data(const char *proteomics_fn)
Proteomics reader.
IMP::multifit::create_weighted_excluded_volume_restraint
IMP::Restraint * create_weighted_excluded_volume_restraint(core::RigidBody rb1, core::RigidBody rb2, FloatKey shell_key=FloatKey("surf_ind"))
Create a weighted excluded volume restraint between two rigid bodies.
IMP::multifit::get_points_close_to_molecule
algebra::Vector3Ds get_points_close_to_molecule(const atom::Hierarchy &mh, const algebra::Vector3Ds points, Float max_dist)
IMP::multifit::get_segmentation
void get_segmentation(em::DensityMap *dmap, double apix, double density_threshold, int num_means, const std::string pdb_filename, const std::string cmm_filename, const std::string seg_filename, const std::string txt_filename)
Segment a density map using the anchor graph.
IMP::multifit::write_connolly_surface
void write_connolly_surface(atom::Atoms atoms, TextOutput fn, float density, float probe_radius)
Write the Connolly surface for a set of atoms to a file.
IMP::core::show
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
Definition: core/Hierarchy.h:396
IMP::multifit::fft_based_rigid_fitting
multifit::FittingSolutionRecords fft_based_rigid_fitting(atom::Hierarchy mol2fit, em::DensityMap *dmap, double density_threshold, double angle_sampling_interval_rad)
FFT fit of a molecule in the density.
IMP::core
Basic functionality that is expected to be used by a wide variety of IMP users.
IMP::algebra
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
IMP::multifit::read_paths
IntsList read_paths(const char *txt_filename, int max_paths=INT_MAX)
Read paths.
IMP::multifit::read_fitting_solutions
FittingSolutionRecords read_fitting_solutions(const char *fitting_fn)
Fitting solutions reader.
IMP::atom::get_resolution
double get_resolution(Model *m, ParticleIndex pi)
Estimate the resolution of the hierarchy as used by Representation.
IMP::display
Output IMP model data in various file formats.
IMP::atom
Functionality for loading, creating, manipulating and scoring atomic structures.
IMP::rmf
Support for the RMF file format for storing hierarchical molecular data and markup.
IMP::domino
Divide-and-conquer inferential optimization in discrete space.
IMP::Restraint
A restraint is a term in an IMP ScoringFunction.
Definition: Restraint.h:52
IMP::multifit::create_coarse_molecule_from_density
atom::Hierarchy create_coarse_molecule_from_density(em::DensityMap *dmap, float dens_threshold, int num_beads, Model *mdl, float bead_radius)
Coarsen a density map based on voxels clustering.