10 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
16 if version_info >= (2, 6, 0):
17 def swig_import_helper():
18 from os.path
import dirname
22 fp, pathname, description = imp.find_module(
'_IMP_gsl', [dirname(__file__)])
28 _mod = imp.load_module(
'_IMP_gsl', fp, pathname, description)
32 _IMP_gsl = swig_import_helper()
33 del swig_import_helper
38 _swig_property = property
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44 if (name ==
"thisown"):
45 return self.this.own(value)
47 if type(value).__name__ ==
'SwigPyObject':
48 self.__dict__[name] = value
50 method = class_type.__swig_setmethods__.get(name,
None)
52 return method(self, value)
54 object.__setattr__(self, name, value)
56 raise AttributeError(
"You cannot add attributes to %s" % self)
59 def _swig_setattr(self, class_type, name, value):
60 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64 if (name ==
"thisown"):
65 return self.this.own()
66 method = class_type.__swig_getmethods__.get(name,
None)
70 return object.__getattr__(self, name)
72 raise AttributeError(name)
74 def _swig_getattr(self, class_type, name):
75 return _swig_getattr_nondynamic(self, class_type, name, 0)
80 strthis =
"proxy of " + self.this.__repr__()
83 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
88 except AttributeError:
95 def _swig_setattr_nondynamic_method(set):
96 def set_attr(self, name, value):
97 if (name ==
"thisown"):
98 return self.this.own(value)
99 if hasattr(self, name)
or (name ==
"this"):
100 set(self, name, value)
102 raise AttributeError(
"You cannot add attributes to %s" % self)
108 weakref_proxy = weakref.proxy
110 weakref_proxy =
lambda x: x
113 class IMP_GSL_SwigPyIterator(object):
114 """Proxy of C++ swig::IMP_GSL_SwigPyIterator class."""
116 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
118 def __init__(self, *args, **kwargs):
119 raise AttributeError(
"No constructor defined - class is abstract")
120 __repr__ = _swig_repr
121 __swig_destroy__ = _IMP_gsl.delete_IMP_GSL_SwigPyIterator
122 __del__ =
lambda self:
None
125 """value(IMP_GSL_SwigPyIterator self) -> PyObject *"""
126 return _IMP_gsl.IMP_GSL_SwigPyIterator_value(self)
131 incr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
132 incr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
134 return _IMP_gsl.IMP_GSL_SwigPyIterator_incr(self, n)
139 decr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
140 decr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
142 return _IMP_gsl.IMP_GSL_SwigPyIterator_decr(self, n)
145 def distance(self, x):
146 """distance(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t"""
147 return _IMP_gsl.IMP_GSL_SwigPyIterator_distance(self, x)
151 """equal(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
152 return _IMP_gsl.IMP_GSL_SwigPyIterator_equal(self, x)
156 """copy(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator"""
157 return _IMP_gsl.IMP_GSL_SwigPyIterator_copy(self)
161 """next(IMP_GSL_SwigPyIterator self) -> PyObject *"""
162 return _IMP_gsl.IMP_GSL_SwigPyIterator_next(self)
166 """__next__(IMP_GSL_SwigPyIterator self) -> PyObject *"""
167 return _IMP_gsl.IMP_GSL_SwigPyIterator___next__(self)
171 """previous(IMP_GSL_SwigPyIterator self) -> PyObject *"""
172 return _IMP_gsl.IMP_GSL_SwigPyIterator_previous(self)
175 def advance(self, n):
176 """advance(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
177 return _IMP_gsl.IMP_GSL_SwigPyIterator_advance(self, n)
181 """__eq__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
182 return _IMP_gsl.IMP_GSL_SwigPyIterator___eq__(self, x)
186 """__ne__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
187 return _IMP_gsl.IMP_GSL_SwigPyIterator___ne__(self, x)
190 def __iadd__(self, n):
191 """__iadd__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
192 return _IMP_gsl.IMP_GSL_SwigPyIterator___iadd__(self, n)
195 def __isub__(self, n):
196 """__isub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
197 return _IMP_gsl.IMP_GSL_SwigPyIterator___isub__(self, n)
200 def __add__(self, n):
201 """__add__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
202 return _IMP_gsl.IMP_GSL_SwigPyIterator___add__(self, n)
205 def __sub__(self, *args):
207 __sub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator
208 __sub__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t
210 return _IMP_gsl.IMP_GSL_SwigPyIterator___sub__(self, *args)
214 IMP_GSL_SwigPyIterator_swigregister = _IMP_gsl.IMP_GSL_SwigPyIterator_swigregister
215 IMP_GSL_SwigPyIterator_swigregister(IMP_GSL_SwigPyIterator)
224 _IMP_gsl.IMP_DEBUG_swigconstant(_IMP_gsl)
225 IMP_DEBUG = _IMP_gsl.IMP_DEBUG
227 _IMP_gsl.IMP_RELEASE_swigconstant(_IMP_gsl)
228 IMP_RELEASE = _IMP_gsl.IMP_RELEASE
230 _IMP_gsl.IMP_SILENT_swigconstant(_IMP_gsl)
231 IMP_SILENT = _IMP_gsl.IMP_SILENT
233 _IMP_gsl.IMP_PROGRESS_swigconstant(_IMP_gsl)
234 IMP_PROGRESS = _IMP_gsl.IMP_PROGRESS
236 _IMP_gsl.IMP_TERSE_swigconstant(_IMP_gsl)
237 IMP_TERSE = _IMP_gsl.IMP_TERSE
239 _IMP_gsl.IMP_VERBOSE_swigconstant(_IMP_gsl)
240 IMP_VERBOSE = _IMP_gsl.IMP_VERBOSE
242 _IMP_gsl.IMP_MEMORY_swigconstant(_IMP_gsl)
243 IMP_MEMORY = _IMP_gsl.IMP_MEMORY
245 _IMP_gsl.IMP_NONE_swigconstant(_IMP_gsl)
246 IMP_NONE = _IMP_gsl.IMP_NONE
248 _IMP_gsl.IMP_USAGE_swigconstant(_IMP_gsl)
249 IMP_USAGE = _IMP_gsl.IMP_USAGE
251 _IMP_gsl.IMP_INTERNAL_swigconstant(_IMP_gsl)
252 IMP_INTERNAL = _IMP_gsl.IMP_INTERNAL
254 _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_gsl)
255 IMP_KERNEL_HAS_LOG4CXX = _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX
257 _IMP_gsl.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_gsl)
258 IMP_COMPILER_HAS_AUTO = _IMP_gsl.IMP_COMPILER_HAS_AUTO
260 _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_gsl)
261 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR
263 _IMP_gsl.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_gsl)
264 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_gsl.IMP_COMPILER_HAS_UNIQUE_PTR
266 _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
267 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM
269 _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_gsl)
270 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS
272 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_gsl)
273 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
275 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_gsl)
276 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
278 _IMP_gsl.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
279 IMPKERNEL_SHOW_WARNINGS = _IMP_gsl.IMPKERNEL_SHOW_WARNINGS
282 class _DirectorObjects(object):
283 """@internal Simple class to keep references to director objects
284 to prevent premature deletion."""
287 def register(self, obj):
288 """Take a reference to a director object; will only work for
289 refcounted C++ classes"""
290 if hasattr(obj,
'get_ref_count'):
291 self._objects.append(obj)
293 """Only drop our reference and allow cleanup by Python if no other
294 Python references exist (we hold 3 references: one in self._objects,
295 one in x, and one in the argument list for getrefcount) *and* no
296 other C++ references exist (the Python object always holds one)"""
297 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
298 or x.get_ref_count() > 1]
302 def get_object_count(self):
303 """Get number of director objects (useful for testing only)"""
304 return len(self._objects)
305 _director_objects = _DirectorObjects()
307 class _ostream(object):
308 """Proxy of C++ std::ostream class."""
310 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
312 def __init__(self, *args, **kwargs):
313 raise AttributeError(
"No constructor defined")
314 __repr__ = _swig_repr
316 def write(self, osa_buf):
317 """write(_ostream self, char const * osa_buf)"""
318 return _IMP_gsl._ostream_write(self, osa_buf)
320 _ostream_swigregister = _IMP_gsl._ostream_swigregister
321 _ostream_swigregister(_ostream)
324 _IMP_gsl.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_gsl)
325 IMP_COMPILER_HAS_OVERRIDE = _IMP_gsl.IMP_COMPILER_HAS_OVERRIDE
327 _IMP_gsl.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_gsl)
328 IMP_COMPILER_HAS_FINAL = _IMP_gsl.IMP_COMPILER_HAS_FINAL
330 _IMP_gsl.IMP_HAS_NOEXCEPT_swigconstant(_IMP_gsl)
331 IMP_HAS_NOEXCEPT = _IMP_gsl.IMP_HAS_NOEXCEPT
334 _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
335 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM
337 _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
338 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
340 _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
341 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM
343 _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
344 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM
346 _IMP_gsl.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
347 IMPCGAL_SHOW_WARNINGS = _IMP_gsl.IMPCGAL_SHOW_WARNINGS
350 _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
351 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL
353 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
354 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
356 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
357 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
359 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
360 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM
362 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
363 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM
365 _IMP_gsl.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_gsl)
366 IMP_ALGEBRA_HAS_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_CGAL
368 _IMP_gsl.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_gsl)
369 IMP_ALGEBRA_HAS_ANN = _IMP_gsl.IMP_ALGEBRA_HAS_ANN
371 _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_gsl)
372 IMPALGEBRA_SHOW_WARNINGS = _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS
375 _IMP_gsl.IMP_GSL_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
376 IMP_GSL_HAS_IMP_CGAL = _IMP_gsl.IMP_GSL_HAS_IMP_CGAL
378 _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
379 IMP_GSL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM
381 _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
382 IMP_GSL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS
384 _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
385 IMP_GSL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM
387 _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
388 IMP_GSL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM
390 _IMP_gsl.IMP_GSL_HAS_CGAL_swigconstant(_IMP_gsl)
391 IMP_GSL_HAS_CGAL = _IMP_gsl.IMP_GSL_HAS_CGAL
393 _IMP_gsl.IMPGSL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
394 IMPGSL_SHOW_WARNINGS = _IMP_gsl.IMPGSL_SHOW_WARNINGS
396 _object_types.append(
"GSLOptimizer")
399 def _object_cast_to_GSLOptimizer(o):
400 """_object_cast_to_GSLOptimizer(Object o) -> GSLOptimizer"""
401 return _IMP_gsl._object_cast_to_GSLOptimizer(o)
403 _object_types.append(
"ConjugateGradients")
406 def _object_cast_to_ConjugateGradients(o):
407 """_object_cast_to_ConjugateGradients(Object o) -> ConjugateGradients"""
408 return _IMP_gsl._object_cast_to_ConjugateGradients(o)
410 _object_types.append(
"QuasiNewton")
413 def _object_cast_to_QuasiNewton(o):
414 """_object_cast_to_QuasiNewton(Object o) -> QuasiNewton"""
415 return _IMP_gsl._object_cast_to_QuasiNewton(o)
417 _object_types.append(
"Simplex")
420 def _object_cast_to_Simplex(o):
421 """_object_cast_to_Simplex(Object o) -> Simplex"""
422 return _IMP_gsl._object_cast_to_Simplex(o)
424 """Proxy of C++ IMP::gsl::GSLOptimizer class."""
426 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
428 def __init__(self, m):
429 """__init__(IMP::gsl::GSLOptimizer self, Model m) -> GSLOptimizer"""
430 if self.__class__ == GSLOptimizer:
434 this = _IMP_gsl.new_GSLOptimizer(_self, m)
436 self.this.append(this)
440 if self.__class__ != GSLOptimizer:
441 _director_objects.register(self)
445 __swig_destroy__ = _IMP_gsl.delete_GSLOptimizer
446 __del__ =
lambda self:
None
448 def set_stop_score(self, d):
449 """set_stop_score(GSLOptimizer self, double d)"""
450 return _IMP_gsl.GSLOptimizer_set_stop_score(self, d)
454 """__str__(GSLOptimizer self) -> std::string"""
455 return _IMP_gsl.GSLOptimizer___str__(self)
459 """__repr__(GSLOptimizer self) -> std::string"""
460 return _IMP_gsl.GSLOptimizer___repr__(self)
465 return _object_cast_to_GSLOptimizer(o)
468 def get_type_name(self):
469 return self.__class__.__name__
470 def do_show(self, out):
473 if"IMP::gsl" ==
"IMP":
474 return VersionInfo(self.__module__,
475 __import__(self.__module__).get_module_version())
478 __import__(self.__module__).get_module_version())
481 return _object_cast_to_GSLOptimizer(o)
483 def __disown__(self):
485 _IMP_gsl.disown_GSLOptimizer(self)
486 return weakref_proxy(self)
489 """do_destroy(GSLOptimizer self)"""
490 return _IMP_gsl.GSLOptimizer_do_destroy(self)
493 def handle_set_has_required_score_states(self, arg0):
494 """handle_set_has_required_score_states(GSLOptimizer self, bool arg0)"""
495 return _IMP_gsl.GSLOptimizer_handle_set_has_required_score_states(self, arg0)
499 """do_get_inputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
500 return _IMP_gsl.GSLOptimizer_do_get_inputs(self)
504 """do_get_outputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
505 return _IMP_gsl.GSLOptimizer_do_get_outputs(self)
508 def do_get_interactions(self):
509 """do_get_interactions(GSLOptimizer self) -> IMP::ModelObjectsTemps"""
510 return _IMP_gsl.GSLOptimizer_do_get_interactions(self)
513 def do_optimize(self, ns):
514 """do_optimize(GSLOptimizer self, unsigned int ns) -> double"""
515 return _IMP_gsl.GSLOptimizer_do_optimize(self, ns)
517 GSLOptimizer_swigregister = _IMP_gsl.GSLOptimizer_swigregister
518 GSLOptimizer_swigregister(GSLOptimizer)
520 class ConjugateGradients(GSLOptimizer):
521 """Proxy of C++ IMP::gsl::ConjugateGradients class."""
523 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
525 def __init__(self, m):
526 """__init__(IMP::gsl::ConjugateGradients self, Model m) -> ConjugateGradients"""
527 this = _IMP_gsl.new_ConjugateGradients(m)
529 self.this.append(this)
533 def set_threshold(self, mg):
534 """set_threshold(ConjugateGradients self, double mg)"""
535 return _IMP_gsl.ConjugateGradients_set_threshold(self, mg)
538 def do_optimize(self, max_steps):
539 """do_optimize(ConjugateGradients self, unsigned int max_steps) -> IMP::Float"""
540 return _IMP_gsl.ConjugateGradients_do_optimize(self, max_steps)
544 """get_version_info(ConjugateGradients self) -> VersionInfo"""
545 return _IMP_gsl.ConjugateGradients_get_version_info(self)
549 """__str__(ConjugateGradients self) -> std::string"""
550 return _IMP_gsl.ConjugateGradients___str__(self)
554 """__repr__(ConjugateGradients self) -> std::string"""
555 return _IMP_gsl.ConjugateGradients___repr__(self)
560 return _object_cast_to_ConjugateGradients(o)
562 ConjugateGradients_swigregister = _IMP_gsl.ConjugateGradients_swigregister
563 ConjugateGradients_swigregister(ConjugateGradients)
565 class QuasiNewton(GSLOptimizer):
566 """Proxy of C++ IMP::gsl::QuasiNewton class."""
568 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
570 def __init__(self, m):
571 """__init__(IMP::gsl::QuasiNewton self, Model m) -> QuasiNewton"""
572 this = _IMP_gsl.new_QuasiNewton(m)
574 self.this.append(this)
578 def set_initial_step(self, length):
579 """set_initial_step(QuasiNewton self, double length)"""
580 return _IMP_gsl.QuasiNewton_set_initial_step(self, length)
583 def set_line_step(self, d):
584 """set_line_step(QuasiNewton self, double d)"""
585 return _IMP_gsl.QuasiNewton_set_line_step(self, d)
588 def set_minimum_gradient(self, d):
589 """set_minimum_gradient(QuasiNewton self, double d)"""
590 return _IMP_gsl.QuasiNewton_set_minimum_gradient(self, d)
593 def do_optimize(self, max_steps):
594 """do_optimize(QuasiNewton self, unsigned int max_steps) -> IMP::Float"""
595 return _IMP_gsl.QuasiNewton_do_optimize(self, max_steps)
599 """get_version_info(QuasiNewton self) -> VersionInfo"""
600 return _IMP_gsl.QuasiNewton_get_version_info(self)
604 """__str__(QuasiNewton self) -> std::string"""
605 return _IMP_gsl.QuasiNewton___str__(self)
609 """__repr__(QuasiNewton self) -> std::string"""
610 return _IMP_gsl.QuasiNewton___repr__(self)
615 return _object_cast_to_QuasiNewton(o)
617 QuasiNewton_swigregister = _IMP_gsl.QuasiNewton_swigregister
618 QuasiNewton_swigregister(QuasiNewton)
620 class Simplex(GSLOptimizer):
621 """Proxy of C++ IMP::gsl::Simplex class."""
623 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
625 def __init__(self, m):
626 """__init__(IMP::gsl::Simplex self, Model m) -> Simplex"""
627 this = _IMP_gsl.new_Simplex(m)
629 self.this.append(this)
633 def set_initial_length(self, length):
634 """set_initial_length(Simplex self, double length)"""
635 return _IMP_gsl.Simplex_set_initial_length(self, length)
638 def set_minimum_size(self, d):
639 """set_minimum_size(Simplex self, double d)"""
640 return _IMP_gsl.Simplex_set_minimum_size(self, d)
643 def do_optimize(self, max_steps):
644 """do_optimize(Simplex self, unsigned int max_steps) -> IMP::Float"""
645 return _IMP_gsl.Simplex_do_optimize(self, max_steps)
649 """get_version_info(Simplex self) -> VersionInfo"""
650 return _IMP_gsl.Simplex_get_version_info(self)
654 """__str__(Simplex self) -> std::string"""
655 return _IMP_gsl.Simplex___str__(self)
659 """__repr__(Simplex self) -> std::string"""
660 return _IMP_gsl.Simplex___repr__(self)
665 return _object_cast_to_Simplex(o)
667 Simplex_swigregister = _IMP_gsl.Simplex_swigregister
668 Simplex_swigregister(Simplex)
671 def get_module_version():
672 """get_module_version() -> std::string const"""
673 return _IMP_gsl.get_module_version()
676 """get_example_path(std::string fname) -> std::string"""
677 return _IMP_gsl.get_example_path(fname)
680 """get_data_path(std::string fname) -> std::string"""
681 return _IMP_gsl.get_data_path(fname)
683 from .
import _version_check
684 _version_check.check_version(get_module_version())
685 __version__ = get_module_version()
Make CGAL functionality available to IMP.
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
virtual void do_destroy()
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Version and module information for Objects.
Base class for optimizers that act on individual attributes.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.