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IMP Reference Guide  2.6.2
The Integrative Modeling Platform
gsl/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.8
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2016 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_gsl', [dirname(__file__)])
23  except ImportError:
24  import _IMP_gsl
25  return _IMP_gsl
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_gsl', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_gsl = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_gsl
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except Exception:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except Exception:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_GSL_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_GSL_SwigPyIterator class."""
115 
116  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
117 
118  def __init__(self, *args, **kwargs):
119  raise AttributeError("No constructor defined - class is abstract")
120  __repr__ = _swig_repr
121  __swig_destroy__ = _IMP_gsl.delete_IMP_GSL_SwigPyIterator
122  __del__ = lambda self: None
123 
124  def value(self):
125  """value(IMP_GSL_SwigPyIterator self) -> PyObject *"""
126  return _IMP_gsl.IMP_GSL_SwigPyIterator_value(self)
127 
128 
129  def incr(self, n=1):
130  """
131  incr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
132  incr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
133  """
134  return _IMP_gsl.IMP_GSL_SwigPyIterator_incr(self, n)
135 
136 
137  def decr(self, n=1):
138  """
139  decr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
140  decr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
141  """
142  return _IMP_gsl.IMP_GSL_SwigPyIterator_decr(self, n)
143 
144 
145  def distance(self, x):
146  """distance(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t"""
147  return _IMP_gsl.IMP_GSL_SwigPyIterator_distance(self, x)
148 
149 
150  def equal(self, x):
151  """equal(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
152  return _IMP_gsl.IMP_GSL_SwigPyIterator_equal(self, x)
153 
154 
155  def copy(self):
156  """copy(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator"""
157  return _IMP_gsl.IMP_GSL_SwigPyIterator_copy(self)
158 
159 
160  def next(self):
161  """next(IMP_GSL_SwigPyIterator self) -> PyObject *"""
162  return _IMP_gsl.IMP_GSL_SwigPyIterator_next(self)
163 
164 
165  def __next__(self):
166  """__next__(IMP_GSL_SwigPyIterator self) -> PyObject *"""
167  return _IMP_gsl.IMP_GSL_SwigPyIterator___next__(self)
168 
169 
170  def previous(self):
171  """previous(IMP_GSL_SwigPyIterator self) -> PyObject *"""
172  return _IMP_gsl.IMP_GSL_SwigPyIterator_previous(self)
173 
174 
175  def advance(self, n):
176  """advance(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
177  return _IMP_gsl.IMP_GSL_SwigPyIterator_advance(self, n)
178 
179 
180  def __eq__(self, x):
181  """__eq__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
182  return _IMP_gsl.IMP_GSL_SwigPyIterator___eq__(self, x)
183 
184 
185  def __ne__(self, x):
186  """__ne__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
187  return _IMP_gsl.IMP_GSL_SwigPyIterator___ne__(self, x)
188 
189 
190  def __iadd__(self, n):
191  """__iadd__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
192  return _IMP_gsl.IMP_GSL_SwigPyIterator___iadd__(self, n)
193 
194 
195  def __isub__(self, n):
196  """__isub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
197  return _IMP_gsl.IMP_GSL_SwigPyIterator___isub__(self, n)
198 
199 
200  def __add__(self, n):
201  """__add__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
202  return _IMP_gsl.IMP_GSL_SwigPyIterator___add__(self, n)
203 
204 
205  def __sub__(self, *args):
206  """
207  __sub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator
208  __sub__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t
209  """
210  return _IMP_gsl.IMP_GSL_SwigPyIterator___sub__(self, *args)
211 
212  def __iter__(self):
213  return self
214 IMP_GSL_SwigPyIterator_swigregister = _IMP_gsl.IMP_GSL_SwigPyIterator_swigregister
215 IMP_GSL_SwigPyIterator_swigregister(IMP_GSL_SwigPyIterator)
216 
217 
218 _value_types=[]
219 _object_types=[]
220 _raii_types=[]
221 _plural_types=[]
222 
223 
224 _IMP_gsl.IMP_DEBUG_swigconstant(_IMP_gsl)
225 IMP_DEBUG = _IMP_gsl.IMP_DEBUG
226 
227 _IMP_gsl.IMP_RELEASE_swigconstant(_IMP_gsl)
228 IMP_RELEASE = _IMP_gsl.IMP_RELEASE
229 
230 _IMP_gsl.IMP_SILENT_swigconstant(_IMP_gsl)
231 IMP_SILENT = _IMP_gsl.IMP_SILENT
232 
233 _IMP_gsl.IMP_PROGRESS_swigconstant(_IMP_gsl)
234 IMP_PROGRESS = _IMP_gsl.IMP_PROGRESS
235 
236 _IMP_gsl.IMP_TERSE_swigconstant(_IMP_gsl)
237 IMP_TERSE = _IMP_gsl.IMP_TERSE
238 
239 _IMP_gsl.IMP_VERBOSE_swigconstant(_IMP_gsl)
240 IMP_VERBOSE = _IMP_gsl.IMP_VERBOSE
241 
242 _IMP_gsl.IMP_MEMORY_swigconstant(_IMP_gsl)
243 IMP_MEMORY = _IMP_gsl.IMP_MEMORY
244 
245 _IMP_gsl.IMP_NONE_swigconstant(_IMP_gsl)
246 IMP_NONE = _IMP_gsl.IMP_NONE
247 
248 _IMP_gsl.IMP_USAGE_swigconstant(_IMP_gsl)
249 IMP_USAGE = _IMP_gsl.IMP_USAGE
250 
251 _IMP_gsl.IMP_INTERNAL_swigconstant(_IMP_gsl)
252 IMP_INTERNAL = _IMP_gsl.IMP_INTERNAL
253 
254 _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_gsl)
255 IMP_KERNEL_HAS_LOG4CXX = _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX
256 
257 _IMP_gsl.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_gsl)
258 IMP_COMPILER_HAS_AUTO = _IMP_gsl.IMP_COMPILER_HAS_AUTO
259 
260 _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_gsl)
261 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR
262 
263 _IMP_gsl.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_gsl)
264 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_gsl.IMP_COMPILER_HAS_UNIQUE_PTR
265 
266 _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
267 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM
268 
269 _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_gsl)
270 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS
271 
272 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_gsl)
273 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
274 
275 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_gsl)
276 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
277 
278 _IMP_gsl.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
279 IMPKERNEL_SHOW_WARNINGS = _IMP_gsl.IMPKERNEL_SHOW_WARNINGS
280 
281 import sys
282 class _DirectorObjects(object):
283  """@internal Simple class to keep references to director objects
284  to prevent premature deletion."""
285  def __init__(self):
286  self._objects = []
287  def register(self, obj):
288  """Take a reference to a director object; will only work for
289  refcounted C++ classes"""
290  if hasattr(obj, 'get_ref_count'):
291  self._objects.append(obj)
292  def cleanup(self):
293  """Only drop our reference and allow cleanup by Python if no other
294  Python references exist (we hold 3 references: one in self._objects,
295  one in x, and one in the argument list for getrefcount) *and* no
296  other C++ references exist (the Python object always holds one)"""
297  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
298  or x.get_ref_count() > 1]
299 # Do in two steps so the references are kept until the end of the
300 # function (deleting references may trigger a fresh call to this method)
301  self._objects = objs
302  def get_object_count(self):
303  """Get number of director objects (useful for testing only)"""
304  return len(self._objects)
305 _director_objects = _DirectorObjects()
306 
307 class _ostream(object):
308  """Proxy of C++ std::ostream class."""
309 
310  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
311 
312  def __init__(self, *args, **kwargs):
313  raise AttributeError("No constructor defined")
314  __repr__ = _swig_repr
315 
316  def write(self, osa_buf):
317  """write(_ostream self, char const * osa_buf)"""
318  return _IMP_gsl._ostream_write(self, osa_buf)
319 
320 _ostream_swigregister = _IMP_gsl._ostream_swigregister
321 _ostream_swigregister(_ostream)
322 
323 
324 _IMP_gsl.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_gsl)
325 IMP_COMPILER_HAS_OVERRIDE = _IMP_gsl.IMP_COMPILER_HAS_OVERRIDE
326 
327 _IMP_gsl.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_gsl)
328 IMP_COMPILER_HAS_FINAL = _IMP_gsl.IMP_COMPILER_HAS_FINAL
329 
330 _IMP_gsl.IMP_HAS_NOEXCEPT_swigconstant(_IMP_gsl)
331 IMP_HAS_NOEXCEPT = _IMP_gsl.IMP_HAS_NOEXCEPT
332 import IMP
333 
334 _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
335 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM
336 
337 _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
338 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
339 
340 _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
341 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM
342 
343 _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
344 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM
345 
346 _IMP_gsl.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
347 IMPCGAL_SHOW_WARNINGS = _IMP_gsl.IMPCGAL_SHOW_WARNINGS
348 import IMP.cgal
349 
350 _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
351 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL
352 
353 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
354 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
355 
356 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
357 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
358 
359 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
360 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM
361 
362 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
363 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM
364 
365 _IMP_gsl.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_gsl)
366 IMP_ALGEBRA_HAS_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_CGAL
367 
368 _IMP_gsl.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_gsl)
369 IMP_ALGEBRA_HAS_ANN = _IMP_gsl.IMP_ALGEBRA_HAS_ANN
370 
371 _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_gsl)
372 IMPALGEBRA_SHOW_WARNINGS = _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS
373 import IMP.algebra
374 
375 _IMP_gsl.IMP_GSL_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
376 IMP_GSL_HAS_IMP_CGAL = _IMP_gsl.IMP_GSL_HAS_IMP_CGAL
377 
378 _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
379 IMP_GSL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM
380 
381 _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
382 IMP_GSL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS
383 
384 _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
385 IMP_GSL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM
386 
387 _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
388 IMP_GSL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM
389 
390 _IMP_gsl.IMP_GSL_HAS_CGAL_swigconstant(_IMP_gsl)
391 IMP_GSL_HAS_CGAL = _IMP_gsl.IMP_GSL_HAS_CGAL
392 
393 _IMP_gsl.IMPGSL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
394 IMPGSL_SHOW_WARNINGS = _IMP_gsl.IMPGSL_SHOW_WARNINGS
395 
396 _object_types.append("GSLOptimizer")
397 
398 
399 def _object_cast_to_GSLOptimizer(o):
400  """_object_cast_to_GSLOptimizer(Object o) -> GSLOptimizer"""
401  return _IMP_gsl._object_cast_to_GSLOptimizer(o)
402 
403 _object_types.append("ConjugateGradients")
404 
405 
406 def _object_cast_to_ConjugateGradients(o):
407  """_object_cast_to_ConjugateGradients(Object o) -> ConjugateGradients"""
408  return _IMP_gsl._object_cast_to_ConjugateGradients(o)
409 
410 _object_types.append("QuasiNewton")
411 
412 
413 def _object_cast_to_QuasiNewton(o):
414  """_object_cast_to_QuasiNewton(Object o) -> QuasiNewton"""
415  return _IMP_gsl._object_cast_to_QuasiNewton(o)
416 
417 _object_types.append("Simplex")
418 
419 
420 def _object_cast_to_Simplex(o):
421  """_object_cast_to_Simplex(Object o) -> Simplex"""
422  return _IMP_gsl._object_cast_to_Simplex(o)
423 class GSLOptimizer(IMP.AttributeOptimizer):
424  """Proxy of C++ IMP::gsl::GSLOptimizer class."""
425 
426  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
427 
428  def __init__(self, m):
429  """__init__(IMP::gsl::GSLOptimizer self, Model m) -> GSLOptimizer"""
430  if self.__class__ == GSLOptimizer:
431  _self = None
432  else:
433  _self = self
434  this = _IMP_gsl.new_GSLOptimizer(_self, m)
435  try:
436  self.this.append(this)
437  except Exception:
438  self.this = this
439 
440  if self.__class__ != GSLOptimizer:
441  _director_objects.register(self)
442 
443 
444 
445  __swig_destroy__ = _IMP_gsl.delete_GSLOptimizer
446  __del__ = lambda self: None
447 
448  def set_stop_score(self, d):
449  """set_stop_score(GSLOptimizer self, double d)"""
450  return _IMP_gsl.GSLOptimizer_set_stop_score(self, d)
451 
452 
453  def __str__(self):
454  """__str__(GSLOptimizer self) -> std::string"""
455  return _IMP_gsl.GSLOptimizer___str__(self)
456 
457 
458  def __repr__(self):
459  """__repr__(GSLOptimizer self) -> std::string"""
460  return _IMP_gsl.GSLOptimizer___repr__(self)
461 
462 
463  @staticmethod
464  def get_from(o):
465  return _object_cast_to_GSLOptimizer(o)
466 
467 
468  def get_type_name(self):
469  return self.__class__.__name__
470  def do_show(self, out):
471  pass
472  def get_version_info(self):
473  if"IMP::gsl" == "IMP":
474  return VersionInfo(self.__module__,
475  __import__(self.__module__).get_module_version())
476  else:
477  return IMP.VersionInfo(self.__module__,
478  __import__(self.__module__).get_module_version())
479  @staticmethod
480  def get_from(o):
481  return _object_cast_to_GSLOptimizer(o)
482 
483  def __disown__(self):
484  self.this.disown()
485  _IMP_gsl.disown_GSLOptimizer(self)
486  return weakref_proxy(self)
487 
488  def do_destroy(self):
489  """do_destroy(GSLOptimizer self)"""
490  return _IMP_gsl.GSLOptimizer_do_destroy(self)
491 
492 
493  def handle_set_has_required_score_states(self, arg0):
494  """handle_set_has_required_score_states(GSLOptimizer self, bool arg0)"""
495  return _IMP_gsl.GSLOptimizer_handle_set_has_required_score_states(self, arg0)
496 
497 
498  def do_get_inputs(self):
499  """do_get_inputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
500  return _IMP_gsl.GSLOptimizer_do_get_inputs(self)
501 
502 
503  def do_get_outputs(self):
504  """do_get_outputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
505  return _IMP_gsl.GSLOptimizer_do_get_outputs(self)
506 
507 
508  def do_get_interactions(self):
509  """do_get_interactions(GSLOptimizer self) -> IMP::ModelObjectsTemps"""
510  return _IMP_gsl.GSLOptimizer_do_get_interactions(self)
511 
512 
513  def do_optimize(self, ns):
514  """do_optimize(GSLOptimizer self, unsigned int ns) -> double"""
515  return _IMP_gsl.GSLOptimizer_do_optimize(self, ns)
516 
517 GSLOptimizer_swigregister = _IMP_gsl.GSLOptimizer_swigregister
518 GSLOptimizer_swigregister(GSLOptimizer)
519 
520 class ConjugateGradients(GSLOptimizer):
521  """Proxy of C++ IMP::gsl::ConjugateGradients class."""
522 
523  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
524 
525  def __init__(self, m):
526  """__init__(IMP::gsl::ConjugateGradients self, Model m) -> ConjugateGradients"""
527  this = _IMP_gsl.new_ConjugateGradients(m)
528  try:
529  self.this.append(this)
530  except Exception:
531  self.this = this
532 
533  def set_threshold(self, mg):
534  """set_threshold(ConjugateGradients self, double mg)"""
535  return _IMP_gsl.ConjugateGradients_set_threshold(self, mg)
536 
537 
538  def do_optimize(self, max_steps):
539  """do_optimize(ConjugateGradients self, unsigned int max_steps) -> IMP::Float"""
540  return _IMP_gsl.ConjugateGradients_do_optimize(self, max_steps)
541 
542 
543  def get_version_info(self):
544  """get_version_info(ConjugateGradients self) -> VersionInfo"""
545  return _IMP_gsl.ConjugateGradients_get_version_info(self)
546 
547 
548  def __str__(self):
549  """__str__(ConjugateGradients self) -> std::string"""
550  return _IMP_gsl.ConjugateGradients___str__(self)
551 
552 
553  def __repr__(self):
554  """__repr__(ConjugateGradients self) -> std::string"""
555  return _IMP_gsl.ConjugateGradients___repr__(self)
556 
557 
558  @staticmethod
559  def get_from(o):
560  return _object_cast_to_ConjugateGradients(o)
561 
562 ConjugateGradients_swigregister = _IMP_gsl.ConjugateGradients_swigregister
563 ConjugateGradients_swigregister(ConjugateGradients)
564 
565 class QuasiNewton(GSLOptimizer):
566  """Proxy of C++ IMP::gsl::QuasiNewton class."""
567 
568  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
569 
570  def __init__(self, m):
571  """__init__(IMP::gsl::QuasiNewton self, Model m) -> QuasiNewton"""
572  this = _IMP_gsl.new_QuasiNewton(m)
573  try:
574  self.this.append(this)
575  except Exception:
576  self.this = this
577 
578  def set_initial_step(self, length):
579  """set_initial_step(QuasiNewton self, double length)"""
580  return _IMP_gsl.QuasiNewton_set_initial_step(self, length)
581 
582 
583  def set_line_step(self, d):
584  """set_line_step(QuasiNewton self, double d)"""
585  return _IMP_gsl.QuasiNewton_set_line_step(self, d)
586 
587 
588  def set_minimum_gradient(self, d):
589  """set_minimum_gradient(QuasiNewton self, double d)"""
590  return _IMP_gsl.QuasiNewton_set_minimum_gradient(self, d)
591 
592 
593  def do_optimize(self, max_steps):
594  """do_optimize(QuasiNewton self, unsigned int max_steps) -> IMP::Float"""
595  return _IMP_gsl.QuasiNewton_do_optimize(self, max_steps)
596 
597 
598  def get_version_info(self):
599  """get_version_info(QuasiNewton self) -> VersionInfo"""
600  return _IMP_gsl.QuasiNewton_get_version_info(self)
601 
602 
603  def __str__(self):
604  """__str__(QuasiNewton self) -> std::string"""
605  return _IMP_gsl.QuasiNewton___str__(self)
606 
607 
608  def __repr__(self):
609  """__repr__(QuasiNewton self) -> std::string"""
610  return _IMP_gsl.QuasiNewton___repr__(self)
611 
612 
613  @staticmethod
614  def get_from(o):
615  return _object_cast_to_QuasiNewton(o)
616 
617 QuasiNewton_swigregister = _IMP_gsl.QuasiNewton_swigregister
618 QuasiNewton_swigregister(QuasiNewton)
619 
620 class Simplex(GSLOptimizer):
621  """Proxy of C++ IMP::gsl::Simplex class."""
622 
623  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
624 
625  def __init__(self, m):
626  """__init__(IMP::gsl::Simplex self, Model m) -> Simplex"""
627  this = _IMP_gsl.new_Simplex(m)
628  try:
629  self.this.append(this)
630  except Exception:
631  self.this = this
632 
633  def set_initial_length(self, length):
634  """set_initial_length(Simplex self, double length)"""
635  return _IMP_gsl.Simplex_set_initial_length(self, length)
636 
637 
638  def set_minimum_size(self, d):
639  """set_minimum_size(Simplex self, double d)"""
640  return _IMP_gsl.Simplex_set_minimum_size(self, d)
641 
642 
643  def do_optimize(self, max_steps):
644  """do_optimize(Simplex self, unsigned int max_steps) -> IMP::Float"""
645  return _IMP_gsl.Simplex_do_optimize(self, max_steps)
646 
647 
648  def get_version_info(self):
649  """get_version_info(Simplex self) -> VersionInfo"""
650  return _IMP_gsl.Simplex_get_version_info(self)
651 
652 
653  def __str__(self):
654  """__str__(Simplex self) -> std::string"""
655  return _IMP_gsl.Simplex___str__(self)
656 
657 
658  def __repr__(self):
659  """__repr__(Simplex self) -> std::string"""
660  return _IMP_gsl.Simplex___repr__(self)
661 
662 
663  @staticmethod
664  def get_from(o):
665  return _object_cast_to_Simplex(o)
666 
667 Simplex_swigregister = _IMP_gsl.Simplex_swigregister
668 Simplex_swigregister(Simplex)
669 
670 
671 def get_module_version():
672  """get_module_version() -> std::string const"""
673  return _IMP_gsl.get_module_version()
674 
675 def get_example_path(fname):
676  """get_example_path(std::string fname) -> std::string"""
677  return _IMP_gsl.get_example_path(fname)
678 
679 def get_data_path(fname):
680  """get_data_path(std::string fname) -> std::string"""
681  return _IMP_gsl.get_data_path(fname)
682 
683 from . import _version_check
684 _version_check.check_version(get_module_version())
685 __version__ = get_module_version()
686 
687 
688 
Make CGAL functionality available to IMP.
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
virtual void do_destroy()
Definition: Object.h:231
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Version and module information for Objects.
Definition: VersionInfo.h:28
Base class for optimizers that act on individual attributes.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
Definition: Object.h:173
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.