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IMP Reference Guide  2.6.2
The Integrative Modeling Platform
Deprecated List
Class IMP.pmi.macros.BuildModel
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use BuildSystem instead
Class IMP.pmi.macros.BuildModel1
As of IMP release 2.5.
Class IMP.pmi.restraints.crosslinking.ConnectivityCrossLinkMS
As of IMP release 2.5.
Member IMP::container::DynamicListPairContainer::add_particle_pair (const ParticlePair &vt)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use add() with indexes instead
Member IMP::container::DynamicListPairContainer::add_particle_pairs (const ParticlePairsTemp &c)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use add() with indexes instead
Member IMP::container::DynamicListPairContainer::clear_particle_pairs ()
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use clear() instead
Member IMP::container::DynamicListPairContainer::set_particle_pairs (ParticlePairsTemp c)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() instead
Member IMP::container::DynamicListQuadContainer::add_particle_quad (const ParticleQuad &vt)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use add() with indexes instead
Member IMP::container::DynamicListQuadContainer::add_particle_quads (const ParticleQuadsTemp &c)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use add() with indexes instead
Member IMP::container::DynamicListQuadContainer::clear_particle_quads ()
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use clear() instead
Member IMP::container::DynamicListQuadContainer::set_particle_quads (ParticleQuadsTemp c)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() instead
Member IMP::container::DynamicListSingletonContainer::add_particle (Particle *vt)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use add() with indexes instead
Member IMP::container::DynamicListSingletonContainer::add_particles (const ParticlesTemp &c)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use add() with indexes instead
Member IMP::container::DynamicListSingletonContainer::clear_particles ()
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use clear() instead
Member IMP::container::DynamicListSingletonContainer::set_particles (ParticlesTemp c)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() instead
Member IMP::container::DynamicListTripletContainer::add_particle_triplet (const ParticleTriplet &vt)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use add() with indexes instead
Member IMP::container::DynamicListTripletContainer::add_particle_triplets (const ParticleTripletsTemp &c)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use add() with indexes instead
Member IMP::container::DynamicListTripletContainer::clear_particle_triplets ()
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use clear() instead
Member IMP::container::DynamicListTripletContainer::set_particle_triplets (ParticleTripletsTemp c)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() instead
Member IMP::container::ListPairContainer::set_particle_pairs (const ParticlePairsTemp &ps)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() with indexes instead
Member IMP::container::ListPairContainer::set_particle_pairs (const ParticleIndexPairs &contents)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() instead
Member IMP::container::ListQuadContainer::set_particle_quads (const ParticleQuadsTemp &ps)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() with indexes instead
Member IMP::container::ListQuadContainer::set_particle_quads (const ParticleIndexQuads &contents)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() instead
Member IMP::container::ListSingletonContainer::set_particles (const ParticlesTemp &ps)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() with indexes instead
Member IMP::container::ListSingletonContainer::set_particles (const ParticleIndexes &contents)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() instead
Member IMP::container::ListTripletContainer::set_particle_triplets (const ParticleTripletsTemp &ps)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() with indexes instead
Member IMP::container::ListTripletContainer::set_particle_triplets (const ParticleIndexTriplets &contents)
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() instead
Member IMP::core::PairConstraint::PairConstraint (PairModifier *before, PairDerivativeModifier *after, const ParticlePair &vt, std::string name="PairConstraint %1%")
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the model/index constructor.
Member IMP::core::PairRestraint::PairRestraint (PairScore *ss, const ParticlePair &vt, std::string name="PairRestraint %1%")
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index-based constructor instead.
Member IMP::core::QuadConstraint::QuadConstraint (QuadModifier *before, QuadDerivativeModifier *after, const ParticleQuad &vt, std::string name="QuadConstraint %1%")
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the model/index constructor.
Member IMP::core::QuadRestraint::QuadRestraint (QuadScore *ss, const ParticleQuad &vt, std::string name="QuadRestraint %1%")
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index-based constructor instead.
Member IMP::core::SingletonConstraint::SingletonConstraint (SingletonModifier *before, SingletonDerivativeModifier *after, Particle *vt, std::string name="SingletonConstraint %1%")
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the model/index constructor.
Member IMP::core::SingletonRestraint::SingletonRestraint (SingletonScore *ss, Particle *vt, std::string name="SingletonRestraint %1%")
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index-based constructor instead.
Member IMP::core::TripletConstraint::TripletConstraint (TripletModifier *before, TripletDerivativeModifier *after, const ParticleTriplet &vt, std::string name="TripletConstraint %1%")
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the model/index constructor.
Member IMP::core::TripletRestraint::TripletRestraint (TripletScore *ss, const ParticleTriplet &vt, std::string name="TripletRestraint %1%")
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index-based constructor instead.
Member IMP::get_dependent_particles (ModelObject *p, const ModelObjectsTemp &all, const DependencyGraph &dg, const DependencyGraphVertexIndex &index)
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. You should act directly on the ModelObjects instead.
Member IMP::get_required_score_states (ModelObject *p, const ModelObjectsTemp &all, const DependencyGraph &dg, const DependencyGraphVertexIndex &index)
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. You should act directly on the ModelObjects instead.
Member IMP::PairContainer::get_particle_pair (unsigned int i) const
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP.Use get_indexes() instead and thing about using the IMP_CONTAINER_FOREACH() macro.
Member IMP::PairContainer::get_particle_pairs () const
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_indexes() instead.
Member IMP::PairPredicate::get_value (const ParticlePairsTemp &o) const
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::PairPredicate::get_value (const ParticlePair &vt) const
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::pmi::macros.BuildModel0
As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use BuildSystem instead
Member IMP::pmi::tools.get_position_terminal_residue
As of IMP release 2.6. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_terminal_residue_position() instead.
Member IMP::QuadContainer::get_particle_quad (unsigned int i) const
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP.Use get_indexes() instead and thing about using the IMP_CONTAINER_FOREACH() macro.
Member IMP::QuadContainer::get_particle_quads () const
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_indexes() instead.
Member IMP::QuadPredicate::get_value (const ParticleQuadsTemp &o) const
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::QuadPredicate::get_value (const ParticleQuad &vt) const
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::SingletonContainer::get_particle (unsigned int i) const
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP.Use get_indexes() instead and thing about using the IMP_CONTAINER_FOREACH() macro.
Member IMP::SingletonContainer::get_particles () const
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_indexes() instead.
Member IMP::SingletonPredicate::get_value (const ParticlesTemp &o) const
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::SingletonPredicate::get_value (Particle *vt) const
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::TripletContainer::get_particle_triplet (unsigned int i) const
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP.Use get_indexes() instead and thing about using the IMP_CONTAINER_FOREACH() macro.
Member IMP::TripletContainer::get_particle_triplets () const
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_indexes() instead.
Member IMP::TripletPredicate::get_value (const ParticleTriplet &vt) const
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::TripletPredicate::get_value (const ParticleTripletsTemp &o) const
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.