Class IMP.pmi.macros.BuildModel: As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use BuildSystem instead
Class IMP.pmi.macros.BuildModel1: As of IMP release 2.5.
Class IMP.pmi.restraints.crosslinking.ConnectivityCrossLinkMS: As of IMP release 2.5.
Member IMP::container::DynamicListPairContainer::add_particle_pair (const ParticlePair &vt): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use add() with indexes instead
Member IMP::container::DynamicListPairContainer::add_particle_pairs (const ParticlePairsTemp &c): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use add() with indexes instead
Member IMP::container::DynamicListPairContainer::clear_particle_pairs (): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use clear() instead
Member IMP::container::DynamicListPairContainer::set_particle_pairs (ParticlePairsTemp c): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() instead
Member IMP::container::DynamicListQuadContainer::add_particle_quad (const ParticleQuad &vt): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use add() with indexes instead
Member IMP::container::DynamicListQuadContainer::add_particle_quads (const ParticleQuadsTemp &c): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use add() with indexes instead
Member IMP::container::DynamicListQuadContainer::clear_particle_quads (): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use clear() instead
Member IMP::container::DynamicListQuadContainer::set_particle_quads (ParticleQuadsTemp c): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() instead
Member IMP::container::DynamicListSingletonContainer::add_particle (Particle *vt): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use add() with indexes instead
Member IMP::container::DynamicListSingletonContainer::add_particles (const ParticlesTemp &c): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use add() with indexes instead
Member IMP::container::DynamicListSingletonContainer::clear_particles (): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use clear() instead
Member IMP::container::DynamicListSingletonContainer::set_particles (ParticlesTemp c): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() instead
Member IMP::container::DynamicListTripletContainer::add_particle_triplet (const ParticleTriplet &vt): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use add() with indexes instead
Member IMP::container::DynamicListTripletContainer::add_particle_triplets (const ParticleTripletsTemp &c): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use add() with indexes instead
Member IMP::container::DynamicListTripletContainer::clear_particle_triplets (): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use clear() instead
Member IMP::container::DynamicListTripletContainer::set_particle_triplets (ParticleTripletsTemp c): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() instead
Member IMP::container::ListPairContainer::set_particle_pairs (const ParticlePairsTemp &ps): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() with indexes instead
Member IMP::container::ListPairContainer::set_particle_pairs (const ParticleIndexPairs &contents): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() instead
Member IMP::container::ListQuadContainer::set_particle_quads (const ParticleQuadsTemp &ps): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() with indexes instead
Member IMP::container::ListQuadContainer::set_particle_quads (const ParticleIndexQuads &contents): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() instead
Member IMP::container::ListSingletonContainer::set_particles (const ParticlesTemp &ps): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() with indexes instead
Member IMP::container::ListSingletonContainer::set_particles (const ParticleIndexes &contents): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() instead
Member IMP::container::ListTripletContainer::set_particle_triplets (const ParticleTripletsTemp &ps): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() with indexes instead
Member IMP::container::ListTripletContainer::set_particle_triplets (const ParticleIndexTriplets &contents): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use set() instead
Member IMP::core::PairConstraint::PairConstraint (PairModifier *before, PairDerivativeModifier *after, const ParticlePair &vt, std::string name="PairConstraint %1%"): As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the model/index constructor.
Member IMP::core::PairRestraint::PairRestraint (PairScore *ss, const ParticlePair &vt, std::string name="PairRestraint %1%"): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index-based constructor instead.
Member IMP::core::QuadConstraint::QuadConstraint (QuadModifier *before, QuadDerivativeModifier *after, const ParticleQuad &vt, std::string name="QuadConstraint %1%"): As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the model/index constructor.
Member IMP::core::QuadRestraint::QuadRestraint (QuadScore *ss, const ParticleQuad &vt, std::string name="QuadRestraint %1%"): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index-based constructor instead.
Member IMP::core::SingletonConstraint::SingletonConstraint (SingletonModifier *before, SingletonDerivativeModifier *after, Particle *vt, std::string name="SingletonConstraint %1%"): As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the model/index constructor.
Member IMP::core::SingletonRestraint::SingletonRestraint (SingletonScore *ss, Particle *vt, std::string name="SingletonRestraint %1%"): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index-based constructor instead.
Member IMP::core::TripletConstraint::TripletConstraint (TripletModifier *before, TripletDerivativeModifier *after, const ParticleTriplet &vt, std::string name="TripletConstraint %1%"): As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the model/index constructor.
Member IMP::core::TripletRestraint::TripletRestraint (TripletScore *ss, const ParticleTriplet &vt, std::string name="TripletRestraint %1%"): As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index-based constructor instead.
Member IMP::get_dependent_particles (ModelObject *p, const ModelObjectsTemp &all, const DependencyGraph &dg, const DependencyGraphVertexIndex &index): As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. You should act directly on the ModelObjects instead.
Member IMP::get_required_score_states (ModelObject *p, const ModelObjectsTemp &all, const DependencyGraph &dg, const DependencyGraphVertexIndex &index): As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. You should act directly on the ModelObjects instead.
Member IMP::PairContainer::get_particle_pair (unsigned int i) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP.Use get_indexes() instead and thing about using the IMP_CONTAINER_FOREACH() macro.
Member IMP::PairContainer::get_particle_pairs () const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_indexes() instead.
Member IMP::PairPredicate::get_value (const ParticlePairsTemp &o) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::PairPredicate::get_value (const ParticlePair &vt) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::pmi::macros.BuildModel0: As of IMP release 2.5. See the IMP Deprecation Policy for more information about deprecation in IMP. Use BuildSystem instead
Member IMP::pmi::tools.get_position_terminal_residue: As of IMP release 2.6. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_terminal_residue_position() instead.
Member IMP::QuadContainer::get_particle_quad (unsigned int i) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP.Use get_indexes() instead and thing about using the IMP_CONTAINER_FOREACH() macro.
Member IMP::QuadContainer::get_particle_quads () const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_indexes() instead.
Member IMP::QuadPredicate::get_value (const ParticleQuadsTemp &o) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::QuadPredicate::get_value (const ParticleQuad &vt) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::SingletonContainer::get_particle (unsigned int i) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP.Use get_indexes() instead and thing about using the IMP_CONTAINER_FOREACH() macro.
Member IMP::SingletonContainer::get_particles () const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_indexes() instead.
Member IMP::SingletonPredicate::get_value (const ParticlesTemp &o) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::SingletonPredicate::get_value (Particle *vt) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::TripletContainer::get_particle_triplet (unsigned int i) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP.Use get_indexes() instead and thing about using the IMP_CONTAINER_FOREACH() macro.
Member IMP::TripletContainer::get_particle_triplets () const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_indexes() instead.
Member IMP::TripletPredicate::get_value (const ParticleTriplet &vt) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::TripletPredicate::get_value (const ParticleTripletsTemp &o) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.