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IMP Reference Guide  2.6.1
The Integrative Modeling Platform
saxs/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2016 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_saxs', [dirname(__file__)])
23  except ImportError:
24  import _IMP_saxs
25  return _IMP_saxs
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_saxs', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_saxs = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_saxs
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_SAXS_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_SAXS_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_saxs.delete_IMP_SAXS_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_SAXS_SwigPyIterator self) -> PyObject *"""
125  return _IMP_saxs.IMP_SAXS_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_SAXS_SwigPyIterator self, size_t n=1) -> IMP_SAXS_SwigPyIterator
131  incr(IMP_SAXS_SwigPyIterator self) -> IMP_SAXS_SwigPyIterator
132  """
133  return _IMP_saxs.IMP_SAXS_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_SAXS_SwigPyIterator self, size_t n=1) -> IMP_SAXS_SwigPyIterator
139  decr(IMP_SAXS_SwigPyIterator self) -> IMP_SAXS_SwigPyIterator
140  """
141  return _IMP_saxs.IMP_SAXS_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_SAXS_SwigPyIterator self, IMP_SAXS_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_saxs.IMP_SAXS_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_SAXS_SwigPyIterator self, IMP_SAXS_SwigPyIterator x) -> bool"""
151  return _IMP_saxs.IMP_SAXS_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_SAXS_SwigPyIterator self) -> IMP_SAXS_SwigPyIterator"""
156  return _IMP_saxs.IMP_SAXS_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_SAXS_SwigPyIterator self) -> PyObject *"""
161  return _IMP_saxs.IMP_SAXS_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_SAXS_SwigPyIterator self) -> PyObject *"""
166  return _IMP_saxs.IMP_SAXS_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_SAXS_SwigPyIterator self) -> PyObject *"""
171  return _IMP_saxs.IMP_SAXS_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_SAXS_SwigPyIterator self, ptrdiff_t n) -> IMP_SAXS_SwigPyIterator"""
176  return _IMP_saxs.IMP_SAXS_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_SAXS_SwigPyIterator self, IMP_SAXS_SwigPyIterator x) -> bool"""
181  return _IMP_saxs.IMP_SAXS_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_SAXS_SwigPyIterator self, IMP_SAXS_SwigPyIterator x) -> bool"""
186  return _IMP_saxs.IMP_SAXS_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_SAXS_SwigPyIterator self, ptrdiff_t n) -> IMP_SAXS_SwigPyIterator"""
191  return _IMP_saxs.IMP_SAXS_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_SAXS_SwigPyIterator self, ptrdiff_t n) -> IMP_SAXS_SwigPyIterator"""
196  return _IMP_saxs.IMP_SAXS_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_SAXS_SwigPyIterator self, ptrdiff_t n) -> IMP_SAXS_SwigPyIterator"""
201  return _IMP_saxs.IMP_SAXS_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_SAXS_SwigPyIterator self, ptrdiff_t n) -> IMP_SAXS_SwigPyIterator
207  __sub__(IMP_SAXS_SwigPyIterator self, IMP_SAXS_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_saxs.IMP_SAXS_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_SAXS_SwigPyIterator_swigregister = _IMP_saxs.IMP_SAXS_SwigPyIterator_swigregister
214 IMP_SAXS_SwigPyIterator_swigregister(IMP_SAXS_SwigPyIterator)
215 
216 
217 _value_types=[]
218 _object_types=[]
219 _raii_types=[]
220 _plural_types=[]
221 
222 
223 _IMP_saxs.IMP_DEBUG_swigconstant(_IMP_saxs)
224 IMP_DEBUG = _IMP_saxs.IMP_DEBUG
225 
226 _IMP_saxs.IMP_RELEASE_swigconstant(_IMP_saxs)
227 IMP_RELEASE = _IMP_saxs.IMP_RELEASE
228 
229 _IMP_saxs.IMP_SILENT_swigconstant(_IMP_saxs)
230 IMP_SILENT = _IMP_saxs.IMP_SILENT
231 
232 _IMP_saxs.IMP_PROGRESS_swigconstant(_IMP_saxs)
233 IMP_PROGRESS = _IMP_saxs.IMP_PROGRESS
234 
235 _IMP_saxs.IMP_TERSE_swigconstant(_IMP_saxs)
236 IMP_TERSE = _IMP_saxs.IMP_TERSE
237 
238 _IMP_saxs.IMP_VERBOSE_swigconstant(_IMP_saxs)
239 IMP_VERBOSE = _IMP_saxs.IMP_VERBOSE
240 
241 _IMP_saxs.IMP_MEMORY_swigconstant(_IMP_saxs)
242 IMP_MEMORY = _IMP_saxs.IMP_MEMORY
243 
244 _IMP_saxs.IMP_NONE_swigconstant(_IMP_saxs)
245 IMP_NONE = _IMP_saxs.IMP_NONE
246 
247 _IMP_saxs.IMP_USAGE_swigconstant(_IMP_saxs)
248 IMP_USAGE = _IMP_saxs.IMP_USAGE
249 
250 _IMP_saxs.IMP_INTERNAL_swigconstant(_IMP_saxs)
251 IMP_INTERNAL = _IMP_saxs.IMP_INTERNAL
252 
253 _IMP_saxs.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_saxs)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_saxs.IMP_KERNEL_HAS_LOG4CXX
255 
256 _IMP_saxs.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_saxs)
257 IMP_COMPILER_HAS_AUTO = _IMP_saxs.IMP_COMPILER_HAS_AUTO
258 
259 _IMP_saxs.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_saxs)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_saxs.IMP_COMPILER_HAS_DEBUG_VECTOR
261 
262 _IMP_saxs.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_saxs)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_saxs.IMP_COMPILER_HAS_UNIQUE_PTR
264 
265 _IMP_saxs.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_saxs)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_saxs.IMP_KERNEL_HAS_BOOST_RANDOM
267 
268 _IMP_saxs.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_saxs)
269 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_saxs.IMP_KERNEL_HAS_GPERFTOOLS
270 
271 _IMP_saxs.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_saxs)
272 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_saxs.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
273 
274 _IMP_saxs.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_saxs)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_saxs.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
276 
277 _IMP_saxs.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_saxs)
278 IMPKERNEL_SHOW_WARNINGS = _IMP_saxs.IMPKERNEL_SHOW_WARNINGS
279 
280 import sys
281 class _DirectorObjects(object):
282  """@internal Simple class to keep references to director objects
283  to prevent premature deletion."""
284  def __init__(self):
285  self._objects = []
286  def register(self, obj):
287  """Take a reference to a director object; will only work for
288  refcounted C++ classes"""
289  if hasattr(obj, 'get_ref_count'):
290  self._objects.append(obj)
291  def cleanup(self):
292  """Only drop our reference and allow cleanup by Python if no other
293  Python references exist (we hold 3 references: one in self._objects,
294  one in x, and one in the argument list for getrefcount) *and* no
295  other C++ references exist (the Python object always holds one)"""
296  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
297  or x.get_ref_count() > 1]
298 # Do in two steps so the references are kept until the end of the
299 # function (deleting references may trigger a fresh call to this method)
300  self._objects = objs
301  def get_object_count(self):
302  """Get number of director objects (useful for testing only)"""
303  return len(self._objects)
304 _director_objects = _DirectorObjects()
305 
306 class _ostream(object):
307  """Proxy of C++ std::ostream class"""
308  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
309 
310  def __init__(self, *args, **kwargs):
311  raise AttributeError("No constructor defined")
312  __repr__ = _swig_repr
313 
314  def write(self, osa_buf):
315  """write(_ostream self, char const * osa_buf)"""
316  return _IMP_saxs._ostream_write(self, osa_buf)
317 
318 _ostream_swigregister = _IMP_saxs._ostream_swigregister
319 _ostream_swigregister(_ostream)
320 
321 
322 _IMP_saxs.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_saxs)
323 IMP_COMPILER_HAS_OVERRIDE = _IMP_saxs.IMP_COMPILER_HAS_OVERRIDE
324 
325 _IMP_saxs.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_saxs)
326 IMP_COMPILER_HAS_FINAL = _IMP_saxs.IMP_COMPILER_HAS_FINAL
327 
328 _IMP_saxs.IMP_HAS_NOEXCEPT_swigconstant(_IMP_saxs)
329 IMP_HAS_NOEXCEPT = _IMP_saxs.IMP_HAS_NOEXCEPT
330 import IMP
331 
332 _IMP_saxs.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_saxs)
333 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_CGAL_HAS_BOOST_FILESYSTEM
334 
335 _IMP_saxs.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_saxs)
336 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
337 
338 _IMP_saxs.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_saxs)
339 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_saxs.IMP_CGAL_HAS_BOOST_RANDOM
340 
341 _IMP_saxs.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_saxs)
342 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_CGAL_HAS_BOOST_SYSTEM
343 
344 _IMP_saxs.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_saxs)
345 IMPCGAL_SHOW_WARNINGS = _IMP_saxs.IMPCGAL_SHOW_WARNINGS
346 import IMP.cgal
347 
348 _IMP_saxs.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_saxs)
349 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_saxs.IMP_ALGEBRA_HAS_IMP_CGAL
350 
351 _IMP_saxs.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_saxs)
352 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
353 
354 _IMP_saxs.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_saxs)
355 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
356 
357 _IMP_saxs.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_saxs)
358 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_saxs.IMP_ALGEBRA_HAS_BOOST_RANDOM
359 
360 _IMP_saxs.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_saxs)
361 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_ALGEBRA_HAS_BOOST_SYSTEM
362 
363 _IMP_saxs.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_saxs)
364 IMP_ALGEBRA_HAS_CGAL = _IMP_saxs.IMP_ALGEBRA_HAS_CGAL
365 
366 _IMP_saxs.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_saxs)
367 IMP_ALGEBRA_HAS_ANN = _IMP_saxs.IMP_ALGEBRA_HAS_ANN
368 
369 _IMP_saxs.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_saxs)
370 IMPALGEBRA_SHOW_WARNINGS = _IMP_saxs.IMPALGEBRA_SHOW_WARNINGS
371 import IMP.algebra
372 
373 _IMP_saxs.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_saxs)
374 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_saxs.IMP_DISPLAY_HAS_IMP_CGAL
375 
376 _IMP_saxs.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_saxs)
377 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
378 
379 _IMP_saxs.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_saxs)
380 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
381 
382 _IMP_saxs.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_saxs)
383 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_saxs.IMP_DISPLAY_HAS_BOOST_RANDOM
384 
385 _IMP_saxs.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_saxs)
386 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_DISPLAY_HAS_BOOST_SYSTEM
387 
388 _IMP_saxs.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_saxs)
389 IMP_DISPLAY_HAS_CGAL = _IMP_saxs.IMP_DISPLAY_HAS_CGAL
390 
391 _IMP_saxs.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_saxs)
392 IMPDISPLAY_SHOW_WARNINGS = _IMP_saxs.IMPDISPLAY_SHOW_WARNINGS
393 import IMP.display
394 
395 _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_saxs)
396 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
397 
398 _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_saxs)
399 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
400 
401 _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_saxs)
402 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
403 
404 _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_saxs)
405 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
406 
407 _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_saxs)
408 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
409 
410 _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_saxs)
411 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_CGAL
412 
413 _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_saxs)
414 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_HDF5
415 
416 _IMP_saxs.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_saxs)
417 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_saxs.IMPSCOREFUNCTOR_SHOW_WARNINGS
418 import IMP.score_functor
419 
420 _IMP_saxs.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_saxs)
421 IMP_CORE_HAS_IMP_CGAL = _IMP_saxs.IMP_CORE_HAS_IMP_CGAL
422 
423 _IMP_saxs.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_saxs)
424 IMP_CORE_HAS_IMP_KERNEL = _IMP_saxs.IMP_CORE_HAS_IMP_KERNEL
425 
426 _IMP_saxs.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_saxs)
427 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_CORE_HAS_BOOST_FILESYSTEM
428 
429 _IMP_saxs.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_saxs)
430 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
431 
432 _IMP_saxs.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_saxs)
433 IMP_CORE_HAS_BOOST_RANDOM = _IMP_saxs.IMP_CORE_HAS_BOOST_RANDOM
434 
435 _IMP_saxs.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_saxs)
436 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_CORE_HAS_BOOST_SYSTEM
437 
438 _IMP_saxs.IMP_CORE_HAS_CGAL_swigconstant(_IMP_saxs)
439 IMP_CORE_HAS_CGAL = _IMP_saxs.IMP_CORE_HAS_CGAL
440 
441 _IMP_saxs.IMP_CORE_HAS_HDF5_swigconstant(_IMP_saxs)
442 IMP_CORE_HAS_HDF5 = _IMP_saxs.IMP_CORE_HAS_HDF5
443 
444 _IMP_saxs.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_saxs)
445 IMPCORE_SHOW_WARNINGS = _IMP_saxs.IMPCORE_SHOW_WARNINGS
446 import IMP.core
447 
448 _IMP_saxs.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_saxs)
449 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_saxs.IMP_CONTAINER_HAS_IMP_ALGEBRA
450 
451 _IMP_saxs.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_saxs)
452 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_saxs.IMP_CONTAINER_HAS_IMP_CGAL
453 
454 _IMP_saxs.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_saxs)
455 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_saxs.IMP_CONTAINER_HAS_IMP_DISPLAY
456 
457 _IMP_saxs.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_saxs)
458 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_saxs.IMP_CONTAINER_HAS_IMP_KERNEL
459 
460 _IMP_saxs.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_saxs)
461 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_saxs.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
462 
463 _IMP_saxs.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_saxs)
464 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
465 
466 _IMP_saxs.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_saxs)
467 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
468 
469 _IMP_saxs.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_saxs)
470 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_saxs.IMP_CONTAINER_HAS_BOOST_RANDOM
471 
472 _IMP_saxs.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_saxs)
473 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_CONTAINER_HAS_BOOST_SYSTEM
474 
475 _IMP_saxs.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_saxs)
476 IMP_CONTAINER_HAS_CGAL = _IMP_saxs.IMP_CONTAINER_HAS_CGAL
477 
478 _IMP_saxs.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_saxs)
479 IMP_CONTAINER_HAS_HDF5 = _IMP_saxs.IMP_CONTAINER_HAS_HDF5
480 
481 _IMP_saxs.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_saxs)
482 IMPCONTAINER_SHOW_WARNINGS = _IMP_saxs.IMPCONTAINER_SHOW_WARNINGS
483 import IMP.container
484 
485 _IMP_saxs.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_saxs)
486 IMP_ATOM_HAS_IMP_CGAL = _IMP_saxs.IMP_ATOM_HAS_IMP_CGAL
487 
488 _IMP_saxs.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_saxs)
489 IMP_ATOM_HAS_IMP_KERNEL = _IMP_saxs.IMP_ATOM_HAS_IMP_KERNEL
490 
491 _IMP_saxs.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_saxs)
492 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_saxs.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
493 
494 _IMP_saxs.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_saxs)
495 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
496 
497 _IMP_saxs.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_saxs)
498 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_saxs.IMP_ATOM_HAS_BOOST_RANDOM
499 
500 _IMP_saxs.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_saxs)
501 IMP_ATOM_HAS_BOOST_REGEX = _IMP_saxs.IMP_ATOM_HAS_BOOST_REGEX
502 
503 _IMP_saxs.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_saxs)
504 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_ATOM_HAS_BOOST_SYSTEM
505 
506 _IMP_saxs.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_saxs)
507 IMP_ATOM_HAS_CGAL = _IMP_saxs.IMP_ATOM_HAS_CGAL
508 
509 _IMP_saxs.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_saxs)
510 IMP_ATOM_HAS_HDF5 = _IMP_saxs.IMP_ATOM_HAS_HDF5
511 
512 _IMP_saxs.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_saxs)
513 IMPATOM_SHOW_WARNINGS = _IMP_saxs.IMPATOM_SHOW_WARNINGS
514 
515 _IMP_saxs.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_saxs)
516 IMP_ATOM_TYPE_INDEX = _IMP_saxs.IMP_ATOM_TYPE_INDEX
517 
518 _IMP_saxs.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_saxs)
519 IMP_RESIDUE_TYPE_INDEX = _IMP_saxs.IMP_RESIDUE_TYPE_INDEX
520 
521 _IMP_saxs.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_saxs)
522 IMP_HIERARCHY_TYPE_INDEX = _IMP_saxs.IMP_HIERARCHY_TYPE_INDEX
523 import IMP.atom
524 
525 _IMP_saxs.IMP_SAXS_HAS_IMP_CGAL_swigconstant(_IMP_saxs)
526 IMP_SAXS_HAS_IMP_CGAL = _IMP_saxs.IMP_SAXS_HAS_IMP_CGAL
527 
528 _IMP_saxs.IMP_SAXS_HAS_IMP_CONTAINER_swigconstant(_IMP_saxs)
529 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_saxs.IMP_SAXS_HAS_IMP_CONTAINER
530 
531 _IMP_saxs.IMP_SAXS_HAS_IMP_DISPLAY_swigconstant(_IMP_saxs)
532 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_saxs.IMP_SAXS_HAS_IMP_DISPLAY
533 
534 _IMP_saxs.IMP_SAXS_HAS_IMP_KERNEL_swigconstant(_IMP_saxs)
535 IMP_SAXS_HAS_IMP_KERNEL = _IMP_saxs.IMP_SAXS_HAS_IMP_KERNEL
536 
537 _IMP_saxs.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_saxs)
538 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_saxs.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
539 
540 _IMP_saxs.IMP_SAXS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_saxs)
541 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_SAXS_HAS_BOOST_FILESYSTEM
542 
543 _IMP_saxs.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_saxs)
544 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
545 
546 _IMP_saxs.IMP_SAXS_HAS_BOOST_RANDOM_swigconstant(_IMP_saxs)
547 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_saxs.IMP_SAXS_HAS_BOOST_RANDOM
548 
549 _IMP_saxs.IMP_SAXS_HAS_BOOST_REGEX_swigconstant(_IMP_saxs)
550 IMP_SAXS_HAS_BOOST_REGEX = _IMP_saxs.IMP_SAXS_HAS_BOOST_REGEX
551 
552 _IMP_saxs.IMP_SAXS_HAS_BOOST_SYSTEM_swigconstant(_IMP_saxs)
553 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_SAXS_HAS_BOOST_SYSTEM
554 
555 _IMP_saxs.IMP_SAXS_HAS_CGAL_swigconstant(_IMP_saxs)
556 IMP_SAXS_HAS_CGAL = _IMP_saxs.IMP_SAXS_HAS_CGAL
557 
558 _IMP_saxs.IMP_SAXS_HAS_HDF5_swigconstant(_IMP_saxs)
559 IMP_SAXS_HAS_HDF5 = _IMP_saxs.IMP_SAXS_HAS_HDF5
560 
561 _IMP_saxs.IMPSAXS_SHOW_WARNINGS_swigconstant(_IMP_saxs)
562 IMPSAXS_SHOW_WARNINGS = _IMP_saxs.IMPSAXS_SHOW_WARNINGS
563 class DistBase(object):
564  """Proxy of C++ std::vector<(double)> class"""
565  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
566  __repr__ = _swig_repr
567 
568  def iterator(self):
569  """iterator(DistBase self) -> IMP_SAXS_SwigPyIterator"""
570  return _IMP_saxs.DistBase_iterator(self)
571 
572  def __iter__(self):
573  return self.iterator()
574 
575  def __nonzero__(self):
576  """__nonzero__(DistBase self) -> bool"""
577  return _IMP_saxs.DistBase___nonzero__(self)
578 
579 
580  def __bool__(self):
581  """__bool__(DistBase self) -> bool"""
582  return _IMP_saxs.DistBase___bool__(self)
583 
584 
585  def __len__(self):
586  """__len__(DistBase self) -> std::vector< double >::size_type"""
587  return _IMP_saxs.DistBase___len__(self)
588 
589 
590  def pop(self):
591  """pop(DistBase self) -> std::vector< double >::value_type"""
592  return _IMP_saxs.DistBase_pop(self)
593 
594 
595  def __getslice__(self, i, j):
596  """__getslice__(DistBase self, std::vector< double >::difference_type i, std::vector< double >::difference_type j) -> DistBase"""
597  return _IMP_saxs.DistBase___getslice__(self, i, j)
598 
599 
600  def __setslice__(self, *args):
601  """
602  __setslice__(DistBase self, std::vector< double >::difference_type i, std::vector< double >::difference_type j, DistBase v)
603  __setslice__(DistBase self, std::vector< double >::difference_type i, std::vector< double >::difference_type j)
604  """
605  return _IMP_saxs.DistBase___setslice__(self, *args)
606 
607 
608  def __delslice__(self, i, j):
609  """__delslice__(DistBase self, std::vector< double >::difference_type i, std::vector< double >::difference_type j)"""
610  return _IMP_saxs.DistBase___delslice__(self, i, j)
611 
612 
613  def __delitem__(self, *args):
614  """
615  __delitem__(DistBase self, std::vector< double >::difference_type i)
616  __delitem__(DistBase self, PySliceObject * slice)
617  """
618  return _IMP_saxs.DistBase___delitem__(self, *args)
619 
620 
621  def __getitem__(self, *args):
622  """
623  __getitem__(DistBase self, PySliceObject * slice) -> DistBase
624  __getitem__(DistBase self, std::vector< double >::difference_type i) -> std::vector< double >::value_type const &
625  """
626  return _IMP_saxs.DistBase___getitem__(self, *args)
627 
628 
629  def __setitem__(self, *args):
630  """
631  __setitem__(DistBase self, PySliceObject * slice, DistBase v)
632  __setitem__(DistBase self, PySliceObject * slice)
633  __setitem__(DistBase self, std::vector< double >::difference_type i, std::vector< double >::value_type const & x)
634  """
635  return _IMP_saxs.DistBase___setitem__(self, *args)
636 
637 
638  def append(self, x):
639  """append(DistBase self, std::vector< double >::value_type const & x)"""
640  return _IMP_saxs.DistBase_append(self, x)
641 
642 
643  def empty(self):
644  """empty(DistBase self) -> bool"""
645  return _IMP_saxs.DistBase_empty(self)
646 
647 
648  def size(self):
649  """size(DistBase self) -> std::vector< double >::size_type"""
650  return _IMP_saxs.DistBase_size(self)
651 
652 
653  def clear(self):
654  """clear(DistBase self)"""
655  return _IMP_saxs.DistBase_clear(self)
656 
657 
658  def swap(self, v):
659  """swap(DistBase self, DistBase v)"""
660  return _IMP_saxs.DistBase_swap(self, v)
661 
662 
663  def get_allocator(self):
664  """get_allocator(DistBase self) -> std::vector< double >::allocator_type"""
665  return _IMP_saxs.DistBase_get_allocator(self)
666 
667 
668  def begin(self):
669  """begin(DistBase self) -> std::vector< double >::iterator"""
670  return _IMP_saxs.DistBase_begin(self)
671 
672 
673  def end(self):
674  """end(DistBase self) -> std::vector< double >::iterator"""
675  return _IMP_saxs.DistBase_end(self)
676 
677 
678  def rbegin(self):
679  """rbegin(DistBase self) -> std::vector< double >::reverse_iterator"""
680  return _IMP_saxs.DistBase_rbegin(self)
681 
682 
683  def rend(self):
684  """rend(DistBase self) -> std::vector< double >::reverse_iterator"""
685  return _IMP_saxs.DistBase_rend(self)
686 
687 
688  def pop_back(self):
689  """pop_back(DistBase self)"""
690  return _IMP_saxs.DistBase_pop_back(self)
691 
692 
693  def erase(self, *args):
694  """
695  erase(DistBase self, std::vector< double >::iterator pos) -> std::vector< double >::iterator
696  erase(DistBase self, std::vector< double >::iterator first, std::vector< double >::iterator last) -> std::vector< double >::iterator
697  """
698  return _IMP_saxs.DistBase_erase(self, *args)
699 
700 
701  def __init__(self, *args):
702  """
703  __init__(std::vector<(double)> self) -> DistBase
704  __init__(std::vector<(double)> self, DistBase arg2) -> DistBase
705  __init__(std::vector<(double)> self, std::vector< double >::size_type size) -> DistBase
706  __init__(std::vector<(double)> self, std::vector< double >::size_type size, std::vector< double >::value_type const & value) -> DistBase
707  """
708  this = _IMP_saxs.new_DistBase(*args)
709  try:
710  self.this.append(this)
711  except:
712  self.this = this
713 
714  def push_back(self, x):
715  """push_back(DistBase self, std::vector< double >::value_type const & x)"""
716  return _IMP_saxs.DistBase_push_back(self, x)
717 
718 
719  def front(self):
720  """front(DistBase self) -> std::vector< double >::value_type const &"""
721  return _IMP_saxs.DistBase_front(self)
722 
723 
724  def back(self):
725  """back(DistBase self) -> std::vector< double >::value_type const &"""
726  return _IMP_saxs.DistBase_back(self)
727 
728 
729  def assign(self, n, x):
730  """assign(DistBase self, std::vector< double >::size_type n, std::vector< double >::value_type const & x)"""
731  return _IMP_saxs.DistBase_assign(self, n, x)
732 
733 
734  def resize(self, *args):
735  """
736  resize(DistBase self, std::vector< double >::size_type new_size)
737  resize(DistBase self, std::vector< double >::size_type new_size, std::vector< double >::value_type const & x)
738  """
739  return _IMP_saxs.DistBase_resize(self, *args)
740 
741 
742  def insert(self, *args):
743  """
744  insert(DistBase self, std::vector< double >::iterator pos, std::vector< double >::value_type const & x) -> std::vector< double >::iterator
745  insert(DistBase self, std::vector< double >::iterator pos, std::vector< double >::size_type n, std::vector< double >::value_type const & x)
746  """
747  return _IMP_saxs.DistBase_insert(self, *args)
748 
749 
750  def reserve(self, n):
751  """reserve(DistBase self, std::vector< double >::size_type n)"""
752  return _IMP_saxs.DistBase_reserve(self, n)
753 
754 
755  def capacity(self):
756  """capacity(DistBase self) -> std::vector< double >::size_type"""
757  return _IMP_saxs.DistBase_capacity(self)
758 
759  __swig_destroy__ = _IMP_saxs.delete_DistBase
760  __del__ = lambda self: None
761 DistBase_swigregister = _IMP_saxs.DistBase_swigregister
762 DistBase_swigregister(DistBase)
763 
764 
765 _object_types.append("Profile")
766 
767 
768 def _object_cast_to_Profile(o):
769  """_object_cast_to_Profile(Object o) -> Profile"""
770  return _IMP_saxs._object_cast_to_Profile(o)
771 
772 _object_types.append("ChiScore")
773 
774 
775 def _object_cast_to_ChiScore(o):
776  """_object_cast_to_ChiScore(Object o) -> ChiScore"""
777  return _IMP_saxs._object_cast_to_ChiScore(o)
778 
779 _object_types.append("ChiScoreLog")
780 
781 
782 def _object_cast_to_ChiScoreLog(o):
783  """_object_cast_to_ChiScoreLog(Object o) -> ChiScoreLog"""
784  return _IMP_saxs._object_cast_to_ChiScoreLog(o)
785 
786 _IMP_saxs.ALL_ATOMS_swigconstant(_IMP_saxs)
787 ALL_ATOMS = _IMP_saxs.ALL_ATOMS
788 
789 _IMP_saxs.HEAVY_ATOMS_swigconstant(_IMP_saxs)
790 HEAVY_ATOMS = _IMP_saxs.HEAVY_ATOMS
791 
792 _IMP_saxs.CA_ATOMS_swigconstant(_IMP_saxs)
793 CA_ATOMS = _IMP_saxs.CA_ATOMS
794 class FormFactorTable(object):
795  """Proxy of C++ IMP::saxs::FormFactorTable class"""
796  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
797  __repr__ = _swig_repr
798 
799  def __init__(self, *args):
800  """
801  __init__(IMP::saxs::FormFactorTable self) -> FormFactorTable
802  __init__(IMP::saxs::FormFactorTable self, std::string const & table_name, double min_q, double max_q, double delta_q) -> FormFactorTable
803  """
804  this = _IMP_saxs.new_FormFactorTable(*args)
805  try:
806  self.this.append(this)
807  except:
808  self.this = this
809 
810  def get_form_factor(self, *args):
811  """
812  get_form_factor(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type) -> double
813  get_form_factor(FormFactorTable self, Particle p) -> double
814  """
815  return _IMP_saxs.FormFactorTable_get_form_factor(self, *args)
816 
817 
818  def get_vacuum_form_factor(self, *args):
819  """
820  get_vacuum_form_factor(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type) -> double
821  get_vacuum_form_factor(FormFactorTable self, Particle p) -> double
822  """
823  return _IMP_saxs.FormFactorTable_get_vacuum_form_factor(self, *args)
824 
825 
826  def get_dummy_form_factor(self, *args):
827  """
828  get_dummy_form_factor(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type) -> double
829  get_dummy_form_factor(FormFactorTable self, Particle p) -> double
830  """
831  return _IMP_saxs.FormFactorTable_get_dummy_form_factor(self, *args)
832 
833 
834  def get_water_form_factor(self):
835  """get_water_form_factor(FormFactorTable self) -> double"""
836  return _IMP_saxs.FormFactorTable_get_water_form_factor(self)
837 
838 
839  def get_vacuum_water_form_factor(self):
840  """get_vacuum_water_form_factor(FormFactorTable self) -> double"""
841  return _IMP_saxs.FormFactorTable_get_vacuum_water_form_factor(self)
842 
843 
844  def get_dummy_water_form_factor(self):
845  """get_dummy_water_form_factor(FormFactorTable self) -> double"""
846  return _IMP_saxs.FormFactorTable_get_dummy_water_form_factor(self)
847 
848 
849  def get_form_factors(self, *args):
850  """
851  get_form_factors(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type) -> IMP::Vector< double > const
852  get_form_factors(FormFactorTable self, Particle p) -> IMP::Vector< double > const &
853  """
854  return _IMP_saxs.FormFactorTable_get_form_factors(self, *args)
855 
856 
857  def get_vacuum_form_factors(self, *args):
858  """
859  get_vacuum_form_factors(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type) -> IMP::Vector< double > const
860  get_vacuum_form_factors(FormFactorTable self, Particle p) -> IMP::Vector< double > const &
861  """
862  return _IMP_saxs.FormFactorTable_get_vacuum_form_factors(self, *args)
863 
864 
865  def get_dummy_form_factors(self, *args):
866  """
867  get_dummy_form_factors(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type) -> IMP::Vector< double > const
868  get_dummy_form_factors(FormFactorTable self, Particle p) -> IMP::Vector< double > const &
869  """
870  return _IMP_saxs.FormFactorTable_get_dummy_form_factors(self, *args)
871 
872 
873  def get_water_form_factors(self):
874  """get_water_form_factors(FormFactorTable self) -> IMP::Vector< double > const &"""
875  return _IMP_saxs.FormFactorTable_get_water_form_factors(self)
876 
877 
878  def get_water_vacuum_form_factors(self):
879  """get_water_vacuum_form_factors(FormFactorTable self) -> IMP::Vector< double > const &"""
880  return _IMP_saxs.FormFactorTable_get_water_vacuum_form_factors(self)
881 
882 
883  def get_water_dummy_form_factors(self):
884  """get_water_dummy_form_factors(FormFactorTable self) -> IMP::Vector< double > const &"""
885  return _IMP_saxs.FormFactorTable_get_water_dummy_form_factors(self)
886 
887 
888  def get_radius(self, *args):
889  """
890  get_radius(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type) -> double
891  get_radius(FormFactorTable self, Particle p) -> double
892  """
893  return _IMP_saxs.FormFactorTable_get_radius(self, *args)
894 
895 
896  def get_volume(self, *args):
897  """
898  get_volume(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type) -> double
899  get_volume(FormFactorTable self, Particle p) -> double
900  """
901  return _IMP_saxs.FormFactorTable_get_volume(self, *args)
902 
903 
904  def show(self, *args):
905  """
906  show(FormFactorTable self, _ostream out, std::string prefix)
907  show(FormFactorTable self, _ostream out)
908  show(FormFactorTable self)
909  """
910  return _IMP_saxs.FormFactorTable_show(self, *args)
911 
912  rho_ = _swig_property(_IMP_saxs.FormFactorTable_rho__get, _IMP_saxs.FormFactorTable_rho__set)
913  __swig_destroy__ = _IMP_saxs.delete_FormFactorTable
914  __del__ = lambda self: None
915 FormFactorTable_swigregister = _IMP_saxs.FormFactorTable_swigregister
916 FormFactorTable_swigregister(FormFactorTable)
917 cvar = _IMP_saxs.cvar
918 
919 
921  """get_default_form_factor_table() -> FormFactorTable"""
922  return _IMP_saxs.get_default_form_factor_table()
923 class Profile(IMP.Object):
924  """Proxy of C++ IMP::saxs::Profile class"""
925  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
926 
927  def __init__(self, *args):
928  """
929  __init__(IMP::saxs::Profile self, std::string const & file_name, bool fit_file=False, double max_q=0.0) -> Profile
930  __init__(IMP::saxs::Profile self, std::string const & file_name, bool fit_file=False) -> Profile
931  __init__(IMP::saxs::Profile self, std::string const & file_name) -> Profile
932  __init__(IMP::saxs::Profile self, double qmin=0.0, double qmax=0.5, double delta=0.005) -> Profile
933  __init__(IMP::saxs::Profile self, double qmin=0.0, double qmax=0.5) -> Profile
934  __init__(IMP::saxs::Profile self, double qmin=0.0) -> Profile
935  __init__(IMP::saxs::Profile self) -> Profile
936  """
937  this = _IMP_saxs.new_Profile(*args)
938  try:
939  self.this.append(this)
940  except:
941  self.this = this
942 
943  def calculate_profile_partial(self, *args):
944  """
945  calculate_profile_partial(Profile self, IMP::Particles const & particles, IMP::Vector< double > const & surface, IMP::saxs::FormFactorType ff_type)
946  calculate_profile_partial(Profile self, IMP::Particles const & particles, IMP::Vector< double > const & surface)
947  calculate_profile_partial(Profile self, IMP::Particles const & particles)
948  calculate_profile_partial(Profile self, IMP::Particles const & particles1, IMP::Particles const & particles2, IMP::Vector< double > const & surface1, IMP::Vector< double > const & surface2, IMP::saxs::FormFactorType ff_type)
949  calculate_profile_partial(Profile self, IMP::Particles const & particles1, IMP::Particles const & particles2, IMP::Vector< double > const & surface1, IMP::Vector< double > const & surface2)
950  calculate_profile_partial(Profile self, IMP::Particles const & particles1, IMP::Particles const & particles2, IMP::Vector< double > const & surface1)
951  calculate_profile_partial(Profile self, IMP::Particles const & particles1, IMP::Particles const & particles2)
952  """
953  return _IMP_saxs.Profile_calculate_profile_partial(self, *args)
954 
955 
956  def calculate_profile_reciprocal_partial(self, *args):
957  """
958  calculate_profile_reciprocal_partial(Profile self, IMP::Particles const & particles, IMP::Vector< double > const & surface, IMP::saxs::FormFactorType ff_type)
959  calculate_profile_reciprocal_partial(Profile self, IMP::Particles const & particles, IMP::Vector< double > const & surface)
960  calculate_profile_reciprocal_partial(Profile self, IMP::Particles const & particles)
961  """
962  return _IMP_saxs.Profile_calculate_profile_reciprocal_partial(self, *args)
963 
964 
965  def calculate_profile(self, *args):
966  """
967  calculate_profile(Profile self, IMP::Particles const & particles, IMP::saxs::FormFactorType ff_type, bool reciprocal=False)
968  calculate_profile(Profile self, IMP::Particles const & particles, IMP::saxs::FormFactorType ff_type)
969  calculate_profile(Profile self, IMP::Particles const & particles)
970  calculate_profile(Profile self, IMP::Particles const & particles1, IMP::Particles const & particles2, IMP::saxs::FormFactorType ff_type)
971  calculate_profile(Profile self, IMP::Particles const & particles1, IMP::Particles const & particles2)
972  """
973  return _IMP_saxs.Profile_calculate_profile(self, *args)
974 
975 
976  def calculate_I0(self, *args):
977  """
978  calculate_I0(Profile self, IMP::Particles const & particles, IMP::saxs::FormFactorType ff_type) -> double
979  calculate_I0(Profile self, IMP::Particles const & particles) -> double
980  """
981  return _IMP_saxs.Profile_calculate_I0(self, *args)
982 
983 
984  def calculate_profile_constant_form_factor(self, particles, form_factor=1.0):
985  """
986  calculate_profile_constant_form_factor(Profile self, IMP::Particles const & particles, double form_factor=1.0)
987  calculate_profile_constant_form_factor(Profile self, IMP::Particles const & particles)
988  """
989  return _IMP_saxs.Profile_calculate_profile_constant_form_factor(self, particles, form_factor)
990 
991 
992  def calculate_profile_symmetric(self, *args):
993  """
994  calculate_profile_symmetric(Profile self, IMP::Particles const & particles, unsigned int n, IMP::saxs::FormFactorType ff_type)
995  calculate_profile_symmetric(Profile self, IMP::Particles const & particles, unsigned int n)
996  """
997  return _IMP_saxs.Profile_calculate_profile_symmetric(self, *args)
998 
999 
1000  def profile_2_distribution(self, rd, max_distance):
1001  """profile_2_distribution(Profile self, RadialDistributionFunction rd, double max_distance)"""
1002  return _IMP_saxs.Profile_profile_2_distribution(self, rd, max_distance)
1003 
1004 
1005  def distribution_2_profile(self, r_dist):
1006  """distribution_2_profile(Profile self, RadialDistributionFunction r_dist)"""
1007  return _IMP_saxs.Profile_distribution_2_profile(self, r_dist)
1008 
1009 
1010  def resample(self, exp_profile, resampled_profile):
1011  """resample(Profile self, Profile exp_profile, Profile resampled_profile)"""
1012  return _IMP_saxs.Profile_resample(self, exp_profile, resampled_profile)
1013 
1014 
1015  def downsample(self, downsampled_profile, point_number):
1016  """downsample(Profile self, Profile downsampled_profile, unsigned int point_number)"""
1017  return _IMP_saxs.Profile_downsample(self, downsampled_profile, point_number)
1018 
1019 
1020  def radius_of_gyration(self, end_q_rg=1.3):
1021  """
1022  radius_of_gyration(Profile self, double end_q_rg=1.3) -> double
1023  radius_of_gyration(Profile self) -> double
1024  """
1025  return _IMP_saxs.Profile_radius_of_gyration(self, end_q_rg)
1026 
1027 
1028  def mean_intensity(self):
1029  """mean_intensity(Profile self) -> double"""
1030  return _IMP_saxs.Profile_mean_intensity(self)
1031 
1032 
1033  def read_SAXS_file(self, file_name, fit_file=False, max_q=0.0):
1034  """
1035  read_SAXS_file(Profile self, std::string const & file_name, bool fit_file=False, double max_q=0.0)
1036  read_SAXS_file(Profile self, std::string const & file_name, bool fit_file=False)
1037  read_SAXS_file(Profile self, std::string const & file_name)
1038  """
1039  return _IMP_saxs.Profile_read_SAXS_file(self, file_name, fit_file, max_q)
1040 
1041 
1042  def write_SAXS_file(self, file_name, max_q=0.0):
1043  """
1044  write_SAXS_file(Profile self, std::string const & file_name, double max_q=0.0)
1045  write_SAXS_file(Profile self, std::string const & file_name)
1046  """
1047  return _IMP_saxs.Profile_write_SAXS_file(self, file_name, max_q)
1048 
1049 
1050  def read_partial_profiles(self, file_name):
1051  """read_partial_profiles(Profile self, std::string const & file_name)"""
1052  return _IMP_saxs.Profile_read_partial_profiles(self, file_name)
1053 
1054 
1055  def write_partial_profiles(self, file_name):
1056  """write_partial_profiles(Profile self, std::string const & file_name)"""
1057  return _IMP_saxs.Profile_write_partial_profiles(self, file_name)
1058 
1059 
1060  def get_delta_q(self):
1061  """get_delta_q(Profile self) -> double"""
1062  return _IMP_saxs.Profile_get_delta_q(self)
1063 
1064 
1065  def get_min_q(self):
1066  """get_min_q(Profile self) -> double"""
1067  return _IMP_saxs.Profile_get_min_q(self)
1068 
1069 
1070  def get_max_q(self):
1071  """get_max_q(Profile self) -> double"""
1072  return _IMP_saxs.Profile_get_max_q(self)
1073 
1074 
1075  def get_intensity(self, i):
1076  """get_intensity(Profile self, unsigned int i) -> double"""
1077  return _IMP_saxs.Profile_get_intensity(self, i)
1078 
1079 
1080  def get_q(self, i):
1081  """get_q(Profile self, unsigned int i) -> double"""
1082  return _IMP_saxs.Profile_get_q(self, i)
1083 
1084 
1085  def get_error(self, i):
1086  """get_error(Profile self, unsigned int i) -> double"""
1087  return _IMP_saxs.Profile_get_error(self, i)
1088 
1089 
1090  def get_weight(self, i):
1091  """get_weight(Profile self, unsigned int i) -> double"""
1092  return _IMP_saxs.Profile_get_weight(self, i)
1093 
1094 
1095  def get_qs(self):
1096  """get_qs(Profile self) -> IMP_Eigen::VectorXf const &"""
1097  return _IMP_saxs.Profile_get_qs(self)
1098 
1099 
1100  def get_intensities(self):
1101  """get_intensities(Profile self) -> IMP_Eigen::VectorXf const &"""
1102  return _IMP_saxs.Profile_get_intensities(self)
1103 
1104 
1105  def get_errors(self):
1106  """get_errors(Profile self) -> IMP_Eigen::VectorXf const &"""
1107  return _IMP_saxs.Profile_get_errors(self)
1108 
1109 
1110  def get_average_radius(self):
1111  """get_average_radius(Profile self) -> double"""
1112  return _IMP_saxs.Profile_get_average_radius(self)
1113 
1114 
1115  def size(self):
1116  """size(Profile self) -> unsigned int"""
1117  return _IMP_saxs.Profile_size(self)
1118 
1119 
1120  def is_uniform_sampling(self):
1121  """is_uniform_sampling(Profile self) -> bool"""
1122  return _IMP_saxs.Profile_is_uniform_sampling(self)
1123 
1124 
1125  def is_partial_profile(self):
1126  """is_partial_profile(Profile self) -> bool"""
1127  return _IMP_saxs.Profile_is_partial_profile(self)
1128 
1129 
1130  def get_name(self):
1131  """get_name(Profile self) -> std::string"""
1132  return _IMP_saxs.Profile_get_name(self)
1133 
1134 
1135  def get_id(self):
1136  """get_id(Profile self) -> unsigned int"""
1137  return _IMP_saxs.Profile_get_id(self)
1138 
1139 
1140  def set_qs(self, q):
1141  """set_qs(Profile self, IMP_Eigen::VectorXf const & q)"""
1142  return _IMP_saxs.Profile_set_qs(self, q)
1143 
1144 
1145  def set_intensities(self, i):
1146  """set_intensities(Profile self, IMP_Eigen::VectorXf const & i)"""
1147  return _IMP_saxs.Profile_set_intensities(self, i)
1148 
1149 
1150  def set_errors(self, e):
1151  """set_errors(Profile self, IMP_Eigen::VectorXf const & e)"""
1152  return _IMP_saxs.Profile_set_errors(self, e)
1153 
1154 
1155  def set_intensity(self, i, iq):
1156  """set_intensity(Profile self, unsigned int i, double iq)"""
1157  return _IMP_saxs.Profile_set_intensity(self, i, iq)
1158 
1159 
1160  def set_ff_table(self, ff_table):
1161  """set_ff_table(Profile self, FormFactorTable ff_table)"""
1162  return _IMP_saxs.Profile_set_ff_table(self, ff_table)
1163 
1164 
1165  def set_average_radius(self, r):
1166  """set_average_radius(Profile self, double r)"""
1167  return _IMP_saxs.Profile_set_average_radius(self, r)
1168 
1169 
1170  def set_average_volume(self, v):
1171  """set_average_volume(Profile self, double v)"""
1172  return _IMP_saxs.Profile_set_average_volume(self, v)
1173 
1174 
1175  def set_name(self, name):
1176  """set_name(Profile self, std::string name)"""
1177  return _IMP_saxs.Profile_set_name(self, name)
1178 
1179 
1180  def set_id(self, id):
1181  """set_id(Profile self, unsigned int id)"""
1182  return _IMP_saxs.Profile_set_id(self, id)
1183 
1184 
1185  def set_beam_profile(self, beam_profile_file):
1186  """set_beam_profile(Profile self, std::string beam_profile_file)"""
1187  return _IMP_saxs.Profile_set_beam_profile(self, beam_profile_file)
1188 
1189 
1190  def add_errors(self):
1191  """add_errors(Profile self)"""
1192  return _IMP_saxs.Profile_add_errors(self)
1193 
1194 
1195  def add_noise(self, percentage=0.03):
1196  """
1197  add_noise(Profile self, double percentage=0.03)
1198  add_noise(Profile self)
1199  """
1200  return _IMP_saxs.Profile_add_noise(self, percentage)
1201 
1202 
1203  def sum_partial_profiles(self, c1, c2, check_cashed=True):
1204  """
1205  sum_partial_profiles(Profile self, double c1, double c2, bool check_cashed=True)
1206  sum_partial_profiles(Profile self, double c1, double c2)
1207  """
1208  return _IMP_saxs.Profile_sum_partial_profiles(self, c1, c2, check_cashed)
1209 
1210 
1211  def add(self, *args):
1212  """
1213  add(Profile self, Profile other_profile, double weight=1.0)
1214  add(Profile self, Profile other_profile)
1215  add(Profile self, IMP::Vector< IMP::saxs::Profile * > const & profiles, IMP::Vector< double > const & weights)
1216  add(Profile self, IMP::Vector< IMP::saxs::Profile * > const & profiles)
1217  """
1218  return _IMP_saxs.Profile_add(self, *args)
1219 
1220 
1221  def add_partial_profiles(self, *args):
1222  """
1223  add_partial_profiles(Profile self, Profile other_profile, double weight=1.0)
1224  add_partial_profiles(Profile self, Profile other_profile)
1225  add_partial_profiles(Profile self, IMP::Vector< IMP::saxs::Profile * > const & profiles, IMP::Vector< double > const & weights)
1226  add_partial_profiles(Profile self, IMP::Vector< IMP::saxs::Profile * > const & profiles)
1227  """
1228  return _IMP_saxs.Profile_add_partial_profiles(self, *args)
1229 
1230 
1231  def background_adjust(self, start_q):
1232  """background_adjust(Profile self, double start_q)"""
1233  return _IMP_saxs.Profile_background_adjust(self, start_q)
1234 
1235 
1236  def scale(self, c):
1237  """scale(Profile self, double c)"""
1238  return _IMP_saxs.Profile_scale(self, c)
1239 
1240 
1241  def offset(self, c):
1242  """offset(Profile self, double c)"""
1243  return _IMP_saxs.Profile_offset(self, c)
1244 
1245 
1246  def copy_errors(self, exp_profile):
1247  """copy_errors(Profile self, Profile exp_profile)"""
1248  return _IMP_saxs.Profile_copy_errors(self, exp_profile)
1249 
1250 
1251  def get_version_info(self):
1252  """get_version_info(Profile self) -> VersionInfo"""
1253  return _IMP_saxs.Profile_get_version_info(self)
1254 
1255 
1256  def __str__(self):
1257  """__str__(Profile self) -> std::string"""
1258  return _IMP_saxs.Profile___str__(self)
1259 
1260 
1261  def __repr__(self):
1262  """__repr__(Profile self) -> std::string"""
1263  return _IMP_saxs.Profile___repr__(self)
1264 
1265 
1266  @staticmethod
1267  def get_from(o):
1268  return _object_cast_to_Profile(o)
1269 
1270 Profile_swigregister = _IMP_saxs.Profile_swigregister
1271 Profile_swigregister(Profile)
1272 Profile.modulation_function_parameter_ = _IMP_saxs.cvar.Profile_modulation_function_parameter_
1273 
1274 class FitParameters(object):
1275  """Proxy of C++ IMP::saxs::FitParameters class"""
1276  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1277  __repr__ = _swig_repr
1278 
1279  def __init__(self, *args):
1280  """
1281  __init__(IMP::saxs::FitParameters self) -> FitParameters
1282  __init__(IMP::saxs::FitParameters self, double chi, double c1, double c2, double c, double o) -> FitParameters
1283  __init__(IMP::saxs::FitParameters self, double chi, double c1, double c2) -> FitParameters
1284  """
1285  this = _IMP_saxs.new_FitParameters(*args)
1286  try:
1287  self.this.append(this)
1288  except:
1289  self.this = this
1290 
1291  def get_score(self):
1292  """get_score(FitParameters self) -> double"""
1293  return _IMP_saxs.FitParameters_get_score(self)
1294 
1295 
1296  def get_chi(self):
1297  """get_chi(FitParameters self) -> double"""
1298  return _IMP_saxs.FitParameters_get_chi(self)
1299 
1300 
1301  def get_c1(self):
1302  """get_c1(FitParameters self) -> double"""
1303  return _IMP_saxs.FitParameters_get_c1(self)
1304 
1305 
1306  def get_c2(self):
1307  """get_c2(FitParameters self) -> double"""
1308  return _IMP_saxs.FitParameters_get_c2(self)
1309 
1310 
1311  def get_scale(self):
1312  """get_scale(FitParameters self) -> double"""
1313  return _IMP_saxs.FitParameters_get_scale(self)
1314 
1315 
1316  def get_offset(self):
1317  """get_offset(FitParameters self) -> double"""
1318  return _IMP_saxs.FitParameters_get_offset(self)
1319 
1320 
1321  def get_default_chi(self):
1322  """get_default_chi(FitParameters self) -> double"""
1323  return _IMP_saxs.FitParameters_get_default_chi(self)
1324 
1325 
1326  def get_pdb_file_name(self):
1327  """get_pdb_file_name(FitParameters self) -> std::string"""
1328  return _IMP_saxs.FitParameters_get_pdb_file_name(self)
1329 
1330 
1331  def get_profile_file_name(self):
1332  """get_profile_file_name(FitParameters self) -> std::string"""
1333  return _IMP_saxs.FitParameters_get_profile_file_name(self)
1334 
1335 
1336  def get_mol_index(self):
1337  """get_mol_index(FitParameters self) -> int"""
1338  return _IMP_saxs.FitParameters_get_mol_index(self)
1339 
1340 
1341  def set_chi(self, chi):
1342  """set_chi(FitParameters self, double chi)"""
1343  return _IMP_saxs.FitParameters_set_chi(self, chi)
1344 
1345 
1346  def set_default_chi(self, chi):
1347  """set_default_chi(FitParameters self, double chi)"""
1348  return _IMP_saxs.FitParameters_set_default_chi(self, chi)
1349 
1350 
1351  def set_profile_file_name(self, file_name):
1352  """set_profile_file_name(FitParameters self, std::string file_name)"""
1353  return _IMP_saxs.FitParameters_set_profile_file_name(self, file_name)
1354 
1355 
1356  def set_pdb_file_name(self, file_name):
1357  """set_pdb_file_name(FitParameters self, std::string file_name)"""
1358  return _IMP_saxs.FitParameters_set_pdb_file_name(self, file_name)
1359 
1360 
1361  def set_mol_index(self, index):
1362  """set_mol_index(FitParameters self, int index)"""
1363  return _IMP_saxs.FitParameters_set_mol_index(self, index)
1364 
1365 
1366  def show(self, s):
1367  """show(FitParameters self, _ostream s)"""
1368  return _IMP_saxs.FitParameters_show(self, s)
1369 
1370  __swig_destroy__ = _IMP_saxs.delete_FitParameters
1371  __del__ = lambda self: None
1372 FitParameters_swigregister = _IMP_saxs.FitParameters_swigregister
1373 FitParameters_swigregister(FitParameters)
1374 
1375 class WeightedFitParameters(FitParameters):
1376  """Proxy of C++ IMP::saxs::WeightedFitParameters class"""
1377  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1378  __repr__ = _swig_repr
1379 
1380  def __init__(self, *args):
1381  """
1382  __init__(IMP::saxs::WeightedFitParameters self) -> WeightedFitParameters
1383  __init__(IMP::saxs::WeightedFitParameters self, double chi, double c1, double c2, IMP::Vector< double > const & weights) -> WeightedFitParameters
1384  """
1385  this = _IMP_saxs.new_WeightedFitParameters(*args)
1386  try:
1387  self.this.append(this)
1388  except:
1389  self.this = this
1390 
1391  def get_weights(self):
1392  """get_weights(WeightedFitParameters self) -> IMP::Vector< double > const &"""
1393  return _IMP_saxs.WeightedFitParameters_get_weights(self)
1394 
1395 
1396  def set_weights(self, weights):
1397  """set_weights(WeightedFitParameters self, IMP::Vector< double > const & weights)"""
1398  return _IMP_saxs.WeightedFitParameters_set_weights(self, weights)
1399 
1400 
1401  def show(self, s):
1402  """show(WeightedFitParameters self, _ostream s)"""
1403  return _IMP_saxs.WeightedFitParameters_show(self, s)
1404 
1405  __swig_destroy__ = _IMP_saxs.delete_WeightedFitParameters
1406  __del__ = lambda self: None
1407 WeightedFitParameters_swigregister = _IMP_saxs.WeightedFitParameters_swigregister
1408 WeightedFitParameters_swigregister(WeightedFitParameters)
1409 
1410 class ChiScore(IMP.Object):
1411  """Proxy of C++ IMP::saxs::ChiScore class"""
1412  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1413 
1414  def __init__(self):
1415  """__init__(IMP::saxs::ChiScore self) -> ChiScore"""
1416  this = _IMP_saxs.new_ChiScore()
1417  try:
1418  self.this.append(this)
1419  except:
1420  self.this = this
1421 
1422  def compute_score(self, exp_profile, model_profile, use_offset=False):
1423  """
1424  compute_score(ChiScore self, Profile exp_profile, Profile model_profile, bool use_offset=False) -> double
1425  compute_score(ChiScore self, Profile exp_profile, Profile model_profile) -> double
1426  """
1427  return _IMP_saxs.ChiScore_compute_score(self, exp_profile, model_profile, use_offset)
1428 
1429 
1430  def compute_scale_factor(self, exp_profile, model_profile, offset=0.0):
1431  """
1432  compute_scale_factor(ChiScore self, Profile exp_profile, Profile model_profile, double offset=0.0) -> double
1433  compute_scale_factor(ChiScore self, Profile exp_profile, Profile model_profile) -> double
1434  """
1435  return _IMP_saxs.ChiScore_compute_scale_factor(self, exp_profile, model_profile, offset)
1436 
1437 
1438  def compute_offset(self, exp_profile, model_profile):
1439  """compute_offset(ChiScore self, Profile exp_profile, Profile model_profile) -> double"""
1440  return _IMP_saxs.ChiScore_compute_offset(self, exp_profile, model_profile)
1441 
1442 
1443  def get_version_info(self):
1444  """get_version_info(ChiScore self) -> VersionInfo"""
1445  return _IMP_saxs.ChiScore_get_version_info(self)
1446 
1447 
1448  def __str__(self):
1449  """__str__(ChiScore self) -> std::string"""
1450  return _IMP_saxs.ChiScore___str__(self)
1451 
1452 
1453  def __repr__(self):
1454  """__repr__(ChiScore self) -> std::string"""
1455  return _IMP_saxs.ChiScore___repr__(self)
1456 
1457 
1458  @staticmethod
1459  def get_from(o):
1460  return _object_cast_to_ChiScore(o)
1461 
1462 ChiScore_swigregister = _IMP_saxs.ChiScore_swigregister
1463 ChiScore_swigregister(ChiScore)
1464 
1465 class ChiScoreLog(IMP.Object):
1466  """Proxy of C++ IMP::saxs::ChiScoreLog class"""
1467  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1468 
1469  def __init__(self):
1470  """__init__(IMP::saxs::ChiScoreLog self) -> ChiScoreLog"""
1471  this = _IMP_saxs.new_ChiScoreLog()
1472  try:
1473  self.this.append(this)
1474  except:
1475  self.this = this
1476 
1477  def compute_score(self, *args):
1478  """
1479  compute_score(ChiScoreLog self, Profile exp_profile, Profile model_profile, bool use_offset=False) -> double
1480  compute_score(ChiScoreLog self, Profile exp_profile, Profile model_profile) -> double
1481  compute_score(ChiScoreLog self, Profile exp_profile, Profile model_profile, double min_q, double max_q) -> double
1482  """
1483  return _IMP_saxs.ChiScoreLog_compute_score(self, *args)
1484 
1485 
1486  def compute_scale_factor(self, exp_profile, model_profile, offset=0.0):
1487  """
1488  compute_scale_factor(ChiScoreLog self, Profile exp_profile, Profile model_profile, double offset=0.0) -> double
1489  compute_scale_factor(ChiScoreLog self, Profile exp_profile, Profile model_profile) -> double
1490  """
1491  return _IMP_saxs.ChiScoreLog_compute_scale_factor(self, exp_profile, model_profile, offset)
1492 
1493 
1494  def compute_offset(self, exp_profile, model_profile):
1495  """compute_offset(ChiScoreLog self, Profile exp_profile, Profile model_profile) -> double"""
1496  return _IMP_saxs.ChiScoreLog_compute_offset(self, exp_profile, model_profile)
1497 
1498 
1499  def get_version_info(self):
1500  """get_version_info(ChiScoreLog self) -> VersionInfo"""
1501  return _IMP_saxs.ChiScoreLog_get_version_info(self)
1502 
1503 
1504  def __str__(self):
1505  """__str__(ChiScoreLog self) -> std::string"""
1506  return _IMP_saxs.ChiScoreLog___str__(self)
1507 
1508 
1509  def __repr__(self):
1510  """__repr__(ChiScoreLog self) -> std::string"""
1511  return _IMP_saxs.ChiScoreLog___repr__(self)
1512 
1513 
1514  @staticmethod
1515  def get_from(o):
1516  return _object_cast_to_ChiScoreLog(o)
1517 
1518 ChiScoreLog_swigregister = _IMP_saxs.ChiScoreLog_swigregister
1519 ChiScoreLog_swigregister(ChiScoreLog)
1520 
1521 class ProfileFitterChi(IMP.Object):
1522  """Proxy of C++ IMP::saxs::ProfileFitter<(IMP::saxs::ChiScore)> class"""
1523  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1524  __repr__ = _swig_repr
1525 
1526  def __init__(self, *args):
1527  """
1528  __init__(IMP::saxs::ProfileFitter<(IMP::saxs::ChiScore)> self, Profile exp_profile) -> ProfileFitterChi
1529  __init__(IMP::saxs::ProfileFitter<(IMP::saxs::ChiScore)> self, Profile exp_profile, ChiScore sf) -> ProfileFitterChi
1530  """
1531  this = _IMP_saxs.new_ProfileFitterChi(*args)
1532  try:
1533  self.this.append(this)
1534  except:
1535  self.this = this
1536 
1537  def compute_score(self, *args):
1538  """
1539  compute_score(ProfileFitterChi self, Profile model_profile, bool use_offset=False, std::string const fit_file_name) -> double
1540  compute_score(ProfileFitterChi self, Profile model_profile, bool use_offset=False) -> double
1541  compute_score(ProfileFitterChi self, Profile model_profile) -> double
1542  """
1543  return _IMP_saxs.ProfileFitterChi_compute_score(self, *args)
1544 
1545 
1546  def fit_profile(self, *args):
1547  """
1548  fit_profile(ProfileFitterChi self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0, bool use_offset=False, std::string const fit_file_name) -> FitParameters
1549  fit_profile(ProfileFitterChi self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0, bool use_offset=False) -> FitParameters
1550  fit_profile(ProfileFitterChi self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0) -> FitParameters
1551  fit_profile(ProfileFitterChi self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0) -> FitParameters
1552  fit_profile(ProfileFitterChi self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05) -> FitParameters
1553  fit_profile(ProfileFitterChi self, Profile partial_profile, double min_c1=0.95) -> FitParameters
1554  fit_profile(ProfileFitterChi self, Profile partial_profile) -> FitParameters
1555  """
1556  return _IMP_saxs.ProfileFitterChi_fit_profile(self, *args)
1557 
1558 
1559  def compute_scale_factor(self, model_profile, offset=0.0):
1560  """
1561  compute_scale_factor(ProfileFitterChi self, Profile model_profile, double offset=0.0) -> double
1562  compute_scale_factor(ProfileFitterChi self, Profile model_profile) -> double
1563  """
1564  return _IMP_saxs.ProfileFitterChi_compute_scale_factor(self, model_profile, offset)
1565 
1566 
1567  def compute_offset(self, model_profile):
1568  """compute_offset(ProfileFitterChi self, Profile model_profile) -> double"""
1569  return _IMP_saxs.ProfileFitterChi_compute_offset(self, model_profile)
1570 
1571 
1572  def resample(self, model_profile, resampled_profile):
1573  """resample(ProfileFitterChi self, Profile model_profile, Profile resampled_profile)"""
1574  return _IMP_saxs.ProfileFitterChi_resample(self, model_profile, resampled_profile)
1575 
1576 
1577  def write_SAXS_fit_file(self, file_name, model_profile, chi_square, c=1, offset=0):
1578  """
1579  write_SAXS_fit_file(ProfileFitterChi self, std::string const & file_name, Profile model_profile, double const chi_square, double const c=1, double const offset=0)
1580  write_SAXS_fit_file(ProfileFitterChi self, std::string const & file_name, Profile model_profile, double const chi_square, double const c=1)
1581  write_SAXS_fit_file(ProfileFitterChi self, std::string const & file_name, Profile model_profile, double const chi_square)
1582  """
1583  return _IMP_saxs.ProfileFitterChi_write_SAXS_fit_file(self, file_name, model_profile, chi_square, c, offset)
1584 
1585  __swig_destroy__ = _IMP_saxs.delete_ProfileFitterChi
1586  __del__ = lambda self: None
1587 ProfileFitterChi_swigregister = _IMP_saxs.ProfileFitterChi_swigregister
1588 ProfileFitterChi_swigregister(ProfileFitterChi)
1589 
1590 class WeightedProfileFitterChi(ProfileFitterChi):
1591  """Proxy of C++ IMP::saxs::WeightedProfileFitter<(IMP::saxs::ChiScore)> class"""
1592  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1593  __repr__ = _swig_repr
1594 
1595  def __init__(self, exp_profile):
1596  """__init__(IMP::saxs::WeightedProfileFitter<(IMP::saxs::ChiScore)> self, Profile exp_profile) -> WeightedProfileFitterChi"""
1597  this = _IMP_saxs.new_WeightedProfileFitterChi(exp_profile)
1598  try:
1599  self.this.append(this)
1600  except:
1601  self.this = this
1602 
1603  def compute_score(self, profiles, weights, NNLS=True):
1604  """
1605  compute_score(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp const & profiles, IMP::Vector< double > & weights, bool NNLS=True) -> double
1606  compute_score(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp const & profiles, IMP::Vector< double > & weights) -> double
1607  """
1608  return _IMP_saxs.WeightedProfileFitterChi_compute_score(self, profiles, weights, NNLS)
1609 
1610 
1611  def fit_profile(self, partial_profiles, min_c1=0.95, max_c1=1.05, min_c2=-2.0, max_c2=4.0):
1612  """
1613  fit_profile(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp partial_profiles, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0) -> WeightedFitParameters
1614  fit_profile(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp partial_profiles, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0) -> WeightedFitParameters
1615  fit_profile(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp partial_profiles, double min_c1=0.95, double max_c1=1.05) -> WeightedFitParameters
1616  fit_profile(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp partial_profiles, double min_c1=0.95) -> WeightedFitParameters
1617  fit_profile(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp partial_profiles) -> WeightedFitParameters
1618  """
1619  return _IMP_saxs.WeightedProfileFitterChi_fit_profile(self, partial_profiles, min_c1, max_c1, min_c2, max_c2)
1620 
1621 
1622  def write_fit_file(self, partial_profiles, fp, fit_file_name):
1623  """write_fit_file(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp partial_profiles, WeightedFitParameters fp, std::string const fit_file_name)"""
1624  return _IMP_saxs.WeightedProfileFitterChi_write_fit_file(self, partial_profiles, fp, fit_file_name)
1625 
1626  __swig_destroy__ = _IMP_saxs.delete_WeightedProfileFitterChi
1627  __del__ = lambda self: None
1628 WeightedProfileFitterChi_swigregister = _IMP_saxs.WeightedProfileFitterChi_swigregister
1629 WeightedProfileFitterChi_swigregister(WeightedProfileFitterChi)
1630 
1631 class Restraint(IMP.Restraint):
1632  """Proxy of C++ IMP::saxs::Restraint class"""
1633  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1634  __repr__ = _swig_repr
1635 
1636  def __init__(self, *args):
1637  """
1638  __init__(IMP::saxs::Restraint self, IMP::Particles const & particles, Profile exp_profile, IMP::saxs::FormFactorType ff_type) -> Restraint
1639  __init__(IMP::saxs::Restraint self, IMP::Particles const & particles, Profile exp_profile) -> Restraint
1640  """
1641  this = _IMP_saxs.new_Restraint(*args)
1642  try:
1643  self.this.append(this)
1644  except:
1645  self.this = this
1646 
1647  if self.__class__ != Restraint:
1648  _director_objects.register(self)
1649 
1650 
1651 
1652 
1653  def do_get_inputs(self):
1654  """do_get_inputs(Restraint self) -> IMP::ModelObjectsTemp"""
1655  return _IMP_saxs.Restraint_do_get_inputs(self)
1656 
1657 
1658  def get_version_info(self):
1659  """get_version_info(Restraint self) -> VersionInfo"""
1660  return _IMP_saxs.Restraint_get_version_info(self)
1661 
1662 Restraint_swigregister = _IMP_saxs.Restraint_swigregister
1663 Restraint_swigregister(Restraint)
1664 
1665 class RadiusOfGyrationRestraint(Restraint):
1666  """Proxy of C++ IMP::saxs::RadiusOfGyrationRestraint class"""
1667  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1668  __repr__ = _swig_repr
1669 
1670  def __init__(self, particles, exp_profile, end_q_rg=1.3):
1671  """
1672  __init__(IMP::saxs::RadiusOfGyrationRestraint self, IMP::Particles const & particles, Profile exp_profile, double const end_q_rg=1.3) -> RadiusOfGyrationRestraint
1673  __init__(IMP::saxs::RadiusOfGyrationRestraint self, IMP::Particles const & particles, Profile exp_profile) -> RadiusOfGyrationRestraint
1674  """
1675  this = _IMP_saxs.new_RadiusOfGyrationRestraint(particles, exp_profile, end_q_rg)
1676  try:
1677  self.this.append(this)
1678  except:
1679  self.this = this
1680 RadiusOfGyrationRestraint_swigregister = _IMP_saxs.RadiusOfGyrationRestraint_swigregister
1681 RadiusOfGyrationRestraint_swigregister(RadiusOfGyrationRestraint)
1682 
1683 class FloatDistribution(DistBase):
1684  """Proxy of C++ IMP::saxs::Distribution<(double)> class"""
1685  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1686  __repr__ = _swig_repr
1687 
1688  def __init__(self, *args):
1689  """
1690  __init__(IMP::saxs::Distribution<(double)> self, double bin_size) -> FloatDistribution
1691  __init__(IMP::saxs::Distribution<(double)> self) -> FloatDistribution
1692  """
1693  this = _IMP_saxs.new_FloatDistribution(*args)
1694  try:
1695  self.this.append(this)
1696  except:
1697  self.this = this
1698 
1699  def get_max_distance(self):
1700  """get_max_distance(FloatDistribution self) -> double"""
1701  return _IMP_saxs.FloatDistribution_get_max_distance(self)
1702 
1703 
1704  def get_bin_size(self):
1705  """get_bin_size(FloatDistribution self) -> double"""
1706  return _IMP_saxs.FloatDistribution_get_bin_size(self)
1707 
1708 
1709  def get_index_from_distance(self, dist):
1710  """get_index_from_distance(FloatDistribution self, double dist) -> unsigned int"""
1711  return _IMP_saxs.FloatDistribution_get_index_from_distance(self, dist)
1712 
1713 
1714  def get_distance_from_index(self, index):
1715  """get_distance_from_index(FloatDistribution self, unsigned int index) -> double"""
1716  return _IMP_saxs.FloatDistribution_get_distance_from_index(self, index)
1717 
1718  __swig_destroy__ = _IMP_saxs.delete_FloatDistribution
1719  __del__ = lambda self: None
1720 FloatDistribution_swigregister = _IMP_saxs.FloatDistribution_swigregister
1721 FloatDistribution_swigregister(FloatDistribution)
1722 
1723 class VectorDistribution(object):
1724  """Proxy of C++ IMP::saxs::Distribution<(IMP::algebra::Vector3D)> class"""
1725  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1726  __repr__ = _swig_repr
1727 
1728  def __init__(self, *args):
1729  """
1730  __init__(IMP::saxs::Distribution<(IMP::algebra::Vector3D)> self, double bin_size) -> VectorDistribution
1731  __init__(IMP::saxs::Distribution<(IMP::algebra::Vector3D)> self) -> VectorDistribution
1732  """
1733  this = _IMP_saxs.new_VectorDistribution(*args)
1734  try:
1735  self.this.append(this)
1736  except:
1737  self.this = this
1738 
1739  def get_max_distance(self):
1740  """get_max_distance(VectorDistribution self) -> double"""
1741  return _IMP_saxs.VectorDistribution_get_max_distance(self)
1742 
1743 
1744  def get_bin_size(self):
1745  """get_bin_size(VectorDistribution self) -> double"""
1746  return _IMP_saxs.VectorDistribution_get_bin_size(self)
1747 
1748 
1749  def get_index_from_distance(self, dist):
1750  """get_index_from_distance(VectorDistribution self, double dist) -> unsigned int"""
1751  return _IMP_saxs.VectorDistribution_get_index_from_distance(self, dist)
1752 
1753 
1754  def get_distance_from_index(self, index):
1755  """get_distance_from_index(VectorDistribution self, unsigned int index) -> double"""
1756  return _IMP_saxs.VectorDistribution_get_distance_from_index(self, index)
1757 
1758  __swig_destroy__ = _IMP_saxs.delete_VectorDistribution
1759  __del__ = lambda self: None
1760 VectorDistribution_swigregister = _IMP_saxs.VectorDistribution_swigregister
1761 VectorDistribution_swigregister(VectorDistribution)
1762 
1763 class RadialDistributionFunction(FloatDistribution):
1764  """Proxy of C++ IMP::saxs::RadialDistributionFunction class"""
1765  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1766  __repr__ = _swig_repr
1767 
1768  def __init__(self, *args):
1769  """
1770  __init__(IMP::saxs::RadialDistributionFunction self, double bin_size) -> RadialDistributionFunction
1771  __init__(IMP::saxs::RadialDistributionFunction self) -> RadialDistributionFunction
1772  __init__(IMP::saxs::RadialDistributionFunction self, std::string const & file_name) -> RadialDistributionFunction
1773  """
1774  this = _IMP_saxs.new_RadialDistributionFunction(*args)
1775  try:
1776  self.this.append(this)
1777  except:
1778  self.this = this
1779 
1780  def scale(self, c):
1781  """scale(RadialDistributionFunction self, double c)"""
1782  return _IMP_saxs.RadialDistributionFunction_scale(self, c)
1783 
1784 
1785  def add(self, model_pr):
1786  """add(RadialDistributionFunction self, RadialDistributionFunction model_pr)"""
1787  return _IMP_saxs.RadialDistributionFunction_add(self, model_pr)
1788 
1789 
1790  def show(self, *args):
1791  """
1792  show(RadialDistributionFunction self, _ostream out)
1793  show(RadialDistributionFunction self)
1794  """
1795  return _IMP_saxs.RadialDistributionFunction_show(self, *args)
1796 
1797 
1798  def R_factor_score(self, *args):
1799  """
1800  R_factor_score(RadialDistributionFunction self, RadialDistributionFunction model_pr, std::string const & file_name) -> double
1801  R_factor_score(RadialDistributionFunction self, RadialDistributionFunction model_pr) -> double
1802  """
1803  return _IMP_saxs.RadialDistributionFunction_R_factor_score(self, *args)
1804 
1805 
1806  def fit(self, *args):
1807  """
1808  fit(RadialDistributionFunction self, RadialDistributionFunction model_pr, std::string const & file_name) -> double
1809  fit(RadialDistributionFunction self, RadialDistributionFunction model_pr) -> double
1810  """
1811  return _IMP_saxs.RadialDistributionFunction_fit(self, *args)
1812 
1813 
1814  def normalize(self):
1815  """normalize(RadialDistributionFunction self)"""
1816  return _IMP_saxs.RadialDistributionFunction_normalize(self)
1817 
1818 
1819  def add_to_distribution(self, dist, value):
1820  """add_to_distribution(RadialDistributionFunction self, double dist, double value)"""
1821  return _IMP_saxs.RadialDistributionFunction_add_to_distribution(self, dist, value)
1822 
1823  __swig_destroy__ = _IMP_saxs.delete_RadialDistributionFunction
1824  __del__ = lambda self: None
1825 RadialDistributionFunction_swigregister = _IMP_saxs.RadialDistributionFunction_swigregister
1826 RadialDistributionFunction_swigregister(RadialDistributionFunction)
1827 
1828 class DeltaDistributionFunction(VectorDistribution):
1829  """Proxy of C++ IMP::saxs::DeltaDistributionFunction class"""
1830  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1831  __repr__ = _swig_repr
1832 
1833  def __init__(self, *args):
1834  """
1835  __init__(IMP::saxs::DeltaDistributionFunction self, IMP::Particles const & particles, double max_distance=0.0, double bin_size) -> DeltaDistributionFunction
1836  __init__(IMP::saxs::DeltaDistributionFunction self, IMP::Particles const & particles, double max_distance=0.0) -> DeltaDistributionFunction
1837  __init__(IMP::saxs::DeltaDistributionFunction self, IMP::Particles const & particles) -> DeltaDistributionFunction
1838  """
1839  this = _IMP_saxs.new_DeltaDistributionFunction(*args)
1840  try:
1841  self.this.append(this)
1842  except:
1843  self.this = this
1844 
1845  def calculate_derivative_distribution(self, particle):
1846  """calculate_derivative_distribution(DeltaDistributionFunction self, Particle particle)"""
1847  return _IMP_saxs.DeltaDistributionFunction_calculate_derivative_distribution(self, particle)
1848 
1849 
1850  def show(self, *args):
1851  """
1852  show(DeltaDistributionFunction self, _ostream out, std::string prefix)
1853  show(DeltaDistributionFunction self, _ostream out)
1854  show(DeltaDistributionFunction self)
1855  """
1856  return _IMP_saxs.DeltaDistributionFunction_show(self, *args)
1857 
1858  __swig_destroy__ = _IMP_saxs.delete_DeltaDistributionFunction
1859  __del__ = lambda self: None
1860 DeltaDistributionFunction_swigregister = _IMP_saxs.DeltaDistributionFunction_swigregister
1861 DeltaDistributionFunction_swigregister(DeltaDistributionFunction)
1862 
1863 class SolventAccessibleSurface(object):
1864  """Proxy of C++ IMP::saxs::SolventAccessibleSurface class"""
1865  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1866  __repr__ = _swig_repr
1867 
1868  def get_solvent_accessibility(self, points, probe_radius=1.8, density=5.0):
1869  """
1870  get_solvent_accessibility(SolventAccessibleSurface self, IMP::core::XYZRs const & points, double probe_radius=1.8, double density=5.0) -> IMP::Vector< double >
1871  get_solvent_accessibility(SolventAccessibleSurface self, IMP::core::XYZRs const & points, double probe_radius=1.8) -> IMP::Vector< double >
1872  get_solvent_accessibility(SolventAccessibleSurface self, IMP::core::XYZRs const & points) -> IMP::Vector< double >
1873  """
1874  return _IMP_saxs.SolventAccessibleSurface_get_solvent_accessibility(self, points, probe_radius, density)
1875 
1876 
1877  def __init__(self):
1878  """__init__(IMP::saxs::SolventAccessibleSurface self) -> SolventAccessibleSurface"""
1879  this = _IMP_saxs.new_SolventAccessibleSurface()
1880  try:
1881  self.this.append(this)
1882  except:
1883  self.this = this
1884  __swig_destroy__ = _IMP_saxs.delete_SolventAccessibleSurface
1885  __del__ = lambda self: None
1886 SolventAccessibleSurface_swigregister = _IMP_saxs.SolventAccessibleSurface_swigregister
1887 SolventAccessibleSurface_swigregister(SolventAccessibleSurface)
1888 
1889 class ProfileFitterChiLog(IMP.Object):
1890  """Proxy of C++ IMP::saxs::ProfileFitter<(IMP::saxs::ChiScoreLog)> class"""
1891  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1892  __repr__ = _swig_repr
1893 
1894  def __init__(self, *args):
1895  """
1896  __init__(IMP::saxs::ProfileFitter<(IMP::saxs::ChiScoreLog)> self, Profile exp_profile) -> ProfileFitterChiLog
1897  __init__(IMP::saxs::ProfileFitter<(IMP::saxs::ChiScoreLog)> self, Profile exp_profile, ChiScoreLog sf) -> ProfileFitterChiLog
1898  """
1899  this = _IMP_saxs.new_ProfileFitterChiLog(*args)
1900  try:
1901  self.this.append(this)
1902  except:
1903  self.this = this
1904 
1905  def compute_score(self, *args):
1906  """
1907  compute_score(ProfileFitterChiLog self, Profile model_profile, bool use_offset=False, std::string const fit_file_name) -> double
1908  compute_score(ProfileFitterChiLog self, Profile model_profile, bool use_offset=False) -> double
1909  compute_score(ProfileFitterChiLog self, Profile model_profile) -> double
1910  """
1911  return _IMP_saxs.ProfileFitterChiLog_compute_score(self, *args)
1912 
1913 
1914  def fit_profile(self, *args):
1915  """
1916  fit_profile(ProfileFitterChiLog self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0, bool use_offset=False, std::string const fit_file_name) -> FitParameters
1917  fit_profile(ProfileFitterChiLog self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0, bool use_offset=False) -> FitParameters
1918  fit_profile(ProfileFitterChiLog self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0) -> FitParameters
1919  fit_profile(ProfileFitterChiLog self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0) -> FitParameters
1920  fit_profile(ProfileFitterChiLog self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05) -> FitParameters
1921  fit_profile(ProfileFitterChiLog self, Profile partial_profile, double min_c1=0.95) -> FitParameters
1922  fit_profile(ProfileFitterChiLog self, Profile partial_profile) -> FitParameters
1923  """
1924  return _IMP_saxs.ProfileFitterChiLog_fit_profile(self, *args)
1925 
1926 
1927  def compute_scale_factor(self, model_profile, offset=0.0):
1928  """
1929  compute_scale_factor(ProfileFitterChiLog self, Profile model_profile, double offset=0.0) -> double
1930  compute_scale_factor(ProfileFitterChiLog self, Profile model_profile) -> double
1931  """
1932  return _IMP_saxs.ProfileFitterChiLog_compute_scale_factor(self, model_profile, offset)
1933 
1934 
1935  def compute_offset(self, model_profile):
1936  """compute_offset(ProfileFitterChiLog self, Profile model_profile) -> double"""
1937  return _IMP_saxs.ProfileFitterChiLog_compute_offset(self, model_profile)
1938 
1939 
1940  def resample(self, model_profile, resampled_profile):
1941  """resample(ProfileFitterChiLog self, Profile model_profile, Profile resampled_profile)"""
1942  return _IMP_saxs.ProfileFitterChiLog_resample(self, model_profile, resampled_profile)
1943 
1944 
1945  def write_SAXS_fit_file(self, file_name, model_profile, chi_square, c=1, offset=0):
1946  """
1947  write_SAXS_fit_file(ProfileFitterChiLog self, std::string const & file_name, Profile model_profile, double const chi_square, double const c=1, double const offset=0)
1948  write_SAXS_fit_file(ProfileFitterChiLog self, std::string const & file_name, Profile model_profile, double const chi_square, double const c=1)
1949  write_SAXS_fit_file(ProfileFitterChiLog self, std::string const & file_name, Profile model_profile, double const chi_square)
1950  """
1951  return _IMP_saxs.ProfileFitterChiLog_write_SAXS_fit_file(self, file_name, model_profile, chi_square, c, offset)
1952 
1953  __swig_destroy__ = _IMP_saxs.delete_ProfileFitterChiLog
1954  __del__ = lambda self: None
1955 ProfileFitterChiLog_swigregister = _IMP_saxs.ProfileFitterChiLog_swigregister
1956 ProfileFitterChiLog_swigregister(ProfileFitterChiLog)
1957 
1958 class ProfileFitterRatioVolatility(IMP.Object):
1959  """Proxy of C++ IMP::saxs::ProfileFitter<(IMP::saxs::RatioVolatilityScore)> class"""
1960  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1961  __repr__ = _swig_repr
1962 
1963  def __init__(self, *args):
1964  """
1965  __init__(IMP::saxs::ProfileFitter<(IMP::saxs::RatioVolatilityScore)> self, Profile exp_profile) -> ProfileFitterRatioVolatility
1966  __init__(IMP::saxs::ProfileFitter<(IMP::saxs::RatioVolatilityScore)> self, Profile exp_profile, IMP::saxs::RatioVolatilityScore * sf) -> ProfileFitterRatioVolatility
1967  """
1968  this = _IMP_saxs.new_ProfileFitterRatioVolatility(*args)
1969  try:
1970  self.this.append(this)
1971  except:
1972  self.this = this
1973 
1974  def compute_score(self, *args):
1975  """
1976  compute_score(ProfileFitterRatioVolatility self, Profile model_profile, bool use_offset=False, std::string const fit_file_name) -> double
1977  compute_score(ProfileFitterRatioVolatility self, Profile model_profile, bool use_offset=False) -> double
1978  compute_score(ProfileFitterRatioVolatility self, Profile model_profile) -> double
1979  """
1980  return _IMP_saxs.ProfileFitterRatioVolatility_compute_score(self, *args)
1981 
1982 
1983  def fit_profile(self, *args):
1984  """
1985  fit_profile(ProfileFitterRatioVolatility self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0, bool use_offset=False, std::string const fit_file_name) -> FitParameters
1986  fit_profile(ProfileFitterRatioVolatility self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0, bool use_offset=False) -> FitParameters
1987  fit_profile(ProfileFitterRatioVolatility self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0) -> FitParameters
1988  fit_profile(ProfileFitterRatioVolatility self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0) -> FitParameters
1989  fit_profile(ProfileFitterRatioVolatility self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05) -> FitParameters
1990  fit_profile(ProfileFitterRatioVolatility self, Profile partial_profile, double min_c1=0.95) -> FitParameters
1991  fit_profile(ProfileFitterRatioVolatility self, Profile partial_profile) -> FitParameters
1992  """
1993  return _IMP_saxs.ProfileFitterRatioVolatility_fit_profile(self, *args)
1994 
1995 
1996  def compute_scale_factor(self, model_profile, offset=0.0):
1997  """
1998  compute_scale_factor(ProfileFitterRatioVolatility self, Profile model_profile, double offset=0.0) -> double
1999  compute_scale_factor(ProfileFitterRatioVolatility self, Profile model_profile) -> double
2000  """
2001  return _IMP_saxs.ProfileFitterRatioVolatility_compute_scale_factor(self, model_profile, offset)
2002 
2003 
2004  def compute_offset(self, model_profile):
2005  """compute_offset(ProfileFitterRatioVolatility self, Profile model_profile) -> double"""
2006  return _IMP_saxs.ProfileFitterRatioVolatility_compute_offset(self, model_profile)
2007 
2008 
2009  def resample(self, model_profile, resampled_profile):
2010  """resample(ProfileFitterRatioVolatility self, Profile model_profile, Profile resampled_profile)"""
2011  return _IMP_saxs.ProfileFitterRatioVolatility_resample(self, model_profile, resampled_profile)
2012 
2013 
2014  def write_SAXS_fit_file(self, file_name, model_profile, chi_square, c=1, offset=0):
2015  """
2016  write_SAXS_fit_file(ProfileFitterRatioVolatility self, std::string const & file_name, Profile model_profile, double const chi_square, double const c=1, double const offset=0)
2017  write_SAXS_fit_file(ProfileFitterRatioVolatility self, std::string const & file_name, Profile model_profile, double const chi_square, double const c=1)
2018  write_SAXS_fit_file(ProfileFitterRatioVolatility self, std::string const & file_name, Profile model_profile, double const chi_square)
2019  """
2020  return _IMP_saxs.ProfileFitterRatioVolatility_write_SAXS_fit_file(self, file_name, model_profile, chi_square, c, offset)
2021 
2022  __swig_destroy__ = _IMP_saxs.delete_ProfileFitterRatioVolatility
2023  __del__ = lambda self: None
2024 ProfileFitterRatioVolatility_swigregister = _IMP_saxs.ProfileFitterRatioVolatility_swigregister
2025 ProfileFitterRatioVolatility_swigregister(ProfileFitterRatioVolatility)
2026 
2027 
2028 def get_module_version():
2029  """get_module_version() -> std::string const"""
2030  return _IMP_saxs.get_module_version()
2031 
2032 def get_example_path(fname):
2033  """get_example_path(std::string fname) -> std::string"""
2034  return _IMP_saxs.get_example_path(fname)
2035 
2036 def get_data_path(fname):
2037  """get_data_path(std::string fname) -> std::string"""
2038  return _IMP_saxs.get_data_path(fname)
2039 
2040 from . import _version_check
2041 _version_check.check_version(get_module_version())
2042 __version__ = get_module_version()
2043 
2044 
2045 
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
FormFactorTable * get_default_form_factor_table()
Composable functors to implement scores via compile-time composition.
double get_volume(const BoundingBoxD< D > &bb)
See BoundingBoxD.
Definition: BoundingBoxD.h:163
Common base class for heavy weight IMP objects.
Definition: Object.h:106
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
double radius_of_gyration(const Particles &particles)
compute radius_of_gyration
Definition: saxs/utility.h:74
A restraint is a term in an IMP ScoringFunction.
Definition: Restraint.h:52