10 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
16 if version_info >= (2, 6, 0):
17 def swig_import_helper():
18 from os.path
import dirname
22 fp, pathname, description = imp.find_module(
'_IMP_rotamer', [dirname(__file__)])
28 _mod = imp.load_module(
'_IMP_rotamer', fp, pathname, description)
32 _IMP_rotamer = swig_import_helper()
33 del swig_import_helper
38 _swig_property = property
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44 if (name ==
"thisown"):
45 return self.this.own(value)
47 if type(value).__name__ ==
'SwigPyObject':
48 self.__dict__[name] = value
50 method = class_type.__swig_setmethods__.get(name,
None)
52 return method(self, value)
54 object.__setattr__(self, name, value)
56 raise AttributeError(
"You cannot add attributes to %s" % self)
59 def _swig_setattr(self, class_type, name, value):
60 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64 if (name ==
"thisown"):
65 return self.this.own()
66 method = class_type.__swig_getmethods__.get(name,
None)
70 return object.__getattr__(self, name)
72 raise AttributeError(name)
74 def _swig_getattr(self, class_type, name):
75 return _swig_getattr_nondynamic(self, class_type, name, 0)
80 strthis =
"proxy of " + self.this.__repr__()
83 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
88 except AttributeError:
95 def _swig_setattr_nondynamic_method(set):
96 def set_attr(self, name, value):
97 if (name ==
"thisown"):
98 return self.this.own(value)
99 if hasattr(self, name)
or (name ==
"this"):
100 set(self, name, value)
102 raise AttributeError(
"You cannot add attributes to %s" % self)
108 weakref_proxy = weakref.proxy
110 weakref_proxy =
lambda x: x
113 class IMP_ROTAMER_SwigPyIterator(object):
114 """Proxy of C++ swig::IMP_ROTAMER_SwigPyIterator class"""
115 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
117 def __init__(self, *args, **kwargs):
118 raise AttributeError(
"No constructor defined - class is abstract")
119 __repr__ = _swig_repr
120 __swig_destroy__ = _IMP_rotamer.delete_IMP_ROTAMER_SwigPyIterator
121 __del__ =
lambda self:
None
124 """value(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
125 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_value(self)
130 incr(IMP_ROTAMER_SwigPyIterator self, size_t n=1) -> IMP_ROTAMER_SwigPyIterator
131 incr(IMP_ROTAMER_SwigPyIterator self) -> IMP_ROTAMER_SwigPyIterator
133 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_incr(self, n)
138 decr(IMP_ROTAMER_SwigPyIterator self, size_t n=1) -> IMP_ROTAMER_SwigPyIterator
139 decr(IMP_ROTAMER_SwigPyIterator self) -> IMP_ROTAMER_SwigPyIterator
141 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_decr(self, n)
144 def distance(self, x):
145 """distance(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> ptrdiff_t"""
146 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_distance(self, x)
150 """equal(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
151 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_equal(self, x)
155 """copy(IMP_ROTAMER_SwigPyIterator self) -> IMP_ROTAMER_SwigPyIterator"""
156 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_copy(self)
160 """next(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
161 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_next(self)
165 """__next__(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
166 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___next__(self)
170 """previous(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
171 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_previous(self)
174 def advance(self, n):
175 """advance(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
176 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_advance(self, n)
180 """__eq__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
181 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___eq__(self, x)
185 """__ne__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
186 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___ne__(self, x)
189 def __iadd__(self, n):
190 """__iadd__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
191 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___iadd__(self, n)
194 def __isub__(self, n):
195 """__isub__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
196 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___isub__(self, n)
199 def __add__(self, n):
200 """__add__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
201 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___add__(self, n)
204 def __sub__(self, *args):
206 __sub__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator
207 __sub__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> ptrdiff_t
209 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___sub__(self, *args)
213 IMP_ROTAMER_SwigPyIterator_swigregister = _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_swigregister
214 IMP_ROTAMER_SwigPyIterator_swigregister(IMP_ROTAMER_SwigPyIterator)
223 _IMP_rotamer.IMP_DEBUG_swigconstant(_IMP_rotamer)
224 IMP_DEBUG = _IMP_rotamer.IMP_DEBUG
226 _IMP_rotamer.IMP_RELEASE_swigconstant(_IMP_rotamer)
227 IMP_RELEASE = _IMP_rotamer.IMP_RELEASE
229 _IMP_rotamer.IMP_SILENT_swigconstant(_IMP_rotamer)
230 IMP_SILENT = _IMP_rotamer.IMP_SILENT
232 _IMP_rotamer.IMP_PROGRESS_swigconstant(_IMP_rotamer)
233 IMP_PROGRESS = _IMP_rotamer.IMP_PROGRESS
235 _IMP_rotamer.IMP_TERSE_swigconstant(_IMP_rotamer)
236 IMP_TERSE = _IMP_rotamer.IMP_TERSE
238 _IMP_rotamer.IMP_VERBOSE_swigconstant(_IMP_rotamer)
239 IMP_VERBOSE = _IMP_rotamer.IMP_VERBOSE
241 _IMP_rotamer.IMP_MEMORY_swigconstant(_IMP_rotamer)
242 IMP_MEMORY = _IMP_rotamer.IMP_MEMORY
244 _IMP_rotamer.IMP_NONE_swigconstant(_IMP_rotamer)
245 IMP_NONE = _IMP_rotamer.IMP_NONE
247 _IMP_rotamer.IMP_USAGE_swigconstant(_IMP_rotamer)
248 IMP_USAGE = _IMP_rotamer.IMP_USAGE
250 _IMP_rotamer.IMP_INTERNAL_swigconstant(_IMP_rotamer)
251 IMP_INTERNAL = _IMP_rotamer.IMP_INTERNAL
253 _IMP_rotamer.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_rotamer)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_rotamer.IMP_KERNEL_HAS_LOG4CXX
256 _IMP_rotamer.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_rotamer)
257 IMP_COMPILER_HAS_AUTO = _IMP_rotamer.IMP_COMPILER_HAS_AUTO
259 _IMP_rotamer.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_rotamer)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_rotamer.IMP_COMPILER_HAS_DEBUG_VECTOR
262 _IMP_rotamer.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_rotamer)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_rotamer.IMP_COMPILER_HAS_UNIQUE_PTR
265 _IMP_rotamer.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_KERNEL_HAS_BOOST_RANDOM
268 _IMP_rotamer.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_rotamer)
269 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_rotamer.IMP_KERNEL_HAS_GPERFTOOLS
271 _IMP_rotamer.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_rotamer)
272 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_rotamer.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
274 _IMP_rotamer.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_rotamer)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_rotamer.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
277 _IMP_rotamer.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
278 IMPKERNEL_SHOW_WARNINGS = _IMP_rotamer.IMPKERNEL_SHOW_WARNINGS
281 class _DirectorObjects(object):
282 """@internal Simple class to keep references to director objects
283 to prevent premature deletion."""
286 def register(self, obj):
287 """Take a reference to a director object; will only work for
288 refcounted C++ classes"""
289 if hasattr(obj,
'get_ref_count'):
290 self._objects.append(obj)
292 """Only drop our reference and allow cleanup by Python if no other
293 Python references exist (we hold 3 references: one in self._objects,
294 one in x, and one in the argument list for getrefcount) *and* no
295 other C++ references exist (the Python object always holds one)"""
296 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
297 or x.get_ref_count() > 1]
301 def get_object_count(self):
302 """Get number of director objects (useful for testing only)"""
303 return len(self._objects)
304 _director_objects = _DirectorObjects()
306 class _ostream(object):
307 """Proxy of C++ std::ostream class"""
308 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
310 def __init__(self, *args, **kwargs):
311 raise AttributeError(
"No constructor defined")
312 __repr__ = _swig_repr
314 def write(self, osa_buf):
315 """write(_ostream self, char const * osa_buf)"""
316 return _IMP_rotamer._ostream_write(self, osa_buf)
318 _ostream_swigregister = _IMP_rotamer._ostream_swigregister
319 _ostream_swigregister(_ostream)
322 _IMP_rotamer.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_rotamer)
323 IMP_COMPILER_HAS_OVERRIDE = _IMP_rotamer.IMP_COMPILER_HAS_OVERRIDE
325 _IMP_rotamer.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_rotamer)
326 IMP_COMPILER_HAS_FINAL = _IMP_rotamer.IMP_COMPILER_HAS_FINAL
328 _IMP_rotamer.IMP_HAS_NOEXCEPT_swigconstant(_IMP_rotamer)
329 IMP_HAS_NOEXCEPT = _IMP_rotamer.IMP_HAS_NOEXCEPT
332 _IMP_rotamer.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rotamer)
333 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CGAL_HAS_BOOST_FILESYSTEM
335 _IMP_rotamer.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rotamer)
336 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
338 _IMP_rotamer.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
339 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CGAL_HAS_BOOST_RANDOM
341 _IMP_rotamer.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_rotamer)
342 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_CGAL_HAS_BOOST_SYSTEM
344 _IMP_rotamer.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
345 IMPCGAL_SHOW_WARNINGS = _IMP_rotamer.IMPCGAL_SHOW_WARNINGS
348 _IMP_rotamer.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_rotamer)
349 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_rotamer.IMP_ALGEBRA_HAS_IMP_CGAL
351 _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rotamer)
352 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
354 _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rotamer)
355 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
357 _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
358 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_RANDOM
360 _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_rotamer)
361 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_SYSTEM
363 _IMP_rotamer.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_rotamer)
364 IMP_ALGEBRA_HAS_CGAL = _IMP_rotamer.IMP_ALGEBRA_HAS_CGAL
366 _IMP_rotamer.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_rotamer)
367 IMP_ALGEBRA_HAS_ANN = _IMP_rotamer.IMP_ALGEBRA_HAS_ANN
369 _IMP_rotamer.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
370 IMPALGEBRA_SHOW_WARNINGS = _IMP_rotamer.IMPALGEBRA_SHOW_WARNINGS
373 _IMP_rotamer.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_rotamer)
374 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_rotamer.IMP_DISPLAY_HAS_IMP_CGAL
376 _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rotamer)
377 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
379 _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rotamer)
380 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
382 _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
383 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_RANDOM
385 _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_rotamer)
386 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_SYSTEM
388 _IMP_rotamer.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_rotamer)
389 IMP_DISPLAY_HAS_CGAL = _IMP_rotamer.IMP_DISPLAY_HAS_CGAL
391 _IMP_rotamer.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
392 IMPDISPLAY_SHOW_WARNINGS = _IMP_rotamer.IMPDISPLAY_SHOW_WARNINGS
395 _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_rotamer)
396 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
398 _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rotamer)
399 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
401 _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rotamer)
402 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
404 _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
405 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
407 _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_rotamer)
408 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
410 _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_rotamer)
411 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_CGAL
413 _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_rotamer)
414 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_HDF5
416 _IMP_rotamer.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
417 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_rotamer.IMPSCOREFUNCTOR_SHOW_WARNINGS
420 _IMP_rotamer.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_rotamer)
421 IMP_CORE_HAS_IMP_CGAL = _IMP_rotamer.IMP_CORE_HAS_IMP_CGAL
423 _IMP_rotamer.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_rotamer)
424 IMP_CORE_HAS_IMP_KERNEL = _IMP_rotamer.IMP_CORE_HAS_IMP_KERNEL
426 _IMP_rotamer.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rotamer)
427 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CORE_HAS_BOOST_FILESYSTEM
429 _IMP_rotamer.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rotamer)
430 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
432 _IMP_rotamer.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
433 IMP_CORE_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CORE_HAS_BOOST_RANDOM
435 _IMP_rotamer.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_rotamer)
436 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_CORE_HAS_BOOST_SYSTEM
438 _IMP_rotamer.IMP_CORE_HAS_CGAL_swigconstant(_IMP_rotamer)
439 IMP_CORE_HAS_CGAL = _IMP_rotamer.IMP_CORE_HAS_CGAL
441 _IMP_rotamer.IMP_CORE_HAS_HDF5_swigconstant(_IMP_rotamer)
442 IMP_CORE_HAS_HDF5 = _IMP_rotamer.IMP_CORE_HAS_HDF5
444 _IMP_rotamer.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
445 IMPCORE_SHOW_WARNINGS = _IMP_rotamer.IMPCORE_SHOW_WARNINGS
448 _IMP_rotamer.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_rotamer)
449 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_ALGEBRA
451 _IMP_rotamer.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_rotamer)
452 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_CGAL
454 _IMP_rotamer.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_rotamer)
455 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_DISPLAY
457 _IMP_rotamer.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_rotamer)
458 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_KERNEL
460 _IMP_rotamer.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rotamer)
461 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
463 _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rotamer)
464 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
466 _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rotamer)
467 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
469 _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
470 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_RANDOM
472 _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_rotamer)
473 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_SYSTEM
475 _IMP_rotamer.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_rotamer)
476 IMP_CONTAINER_HAS_CGAL = _IMP_rotamer.IMP_CONTAINER_HAS_CGAL
478 _IMP_rotamer.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_rotamer)
479 IMP_CONTAINER_HAS_HDF5 = _IMP_rotamer.IMP_CONTAINER_HAS_HDF5
481 _IMP_rotamer.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
482 IMPCONTAINER_SHOW_WARNINGS = _IMP_rotamer.IMPCONTAINER_SHOW_WARNINGS
485 _IMP_rotamer.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_rotamer)
486 IMP_ATOM_HAS_IMP_CGAL = _IMP_rotamer.IMP_ATOM_HAS_IMP_CGAL
488 _IMP_rotamer.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_rotamer)
489 IMP_ATOM_HAS_IMP_KERNEL = _IMP_rotamer.IMP_ATOM_HAS_IMP_KERNEL
491 _IMP_rotamer.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rotamer)
492 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
494 _IMP_rotamer.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rotamer)
495 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
497 _IMP_rotamer.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
498 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ATOM_HAS_BOOST_RANDOM
500 _IMP_rotamer.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_rotamer)
501 IMP_ATOM_HAS_BOOST_REGEX = _IMP_rotamer.IMP_ATOM_HAS_BOOST_REGEX
503 _IMP_rotamer.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_rotamer)
504 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_ATOM_HAS_BOOST_SYSTEM
506 _IMP_rotamer.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_rotamer)
507 IMP_ATOM_HAS_CGAL = _IMP_rotamer.IMP_ATOM_HAS_CGAL
509 _IMP_rotamer.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_rotamer)
510 IMP_ATOM_HAS_HDF5 = _IMP_rotamer.IMP_ATOM_HAS_HDF5
512 _IMP_rotamer.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
513 IMPATOM_SHOW_WARNINGS = _IMP_rotamer.IMPATOM_SHOW_WARNINGS
515 _IMP_rotamer.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_rotamer)
516 IMP_ATOM_TYPE_INDEX = _IMP_rotamer.IMP_ATOM_TYPE_INDEX
518 _IMP_rotamer.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_rotamer)
519 IMP_RESIDUE_TYPE_INDEX = _IMP_rotamer.IMP_RESIDUE_TYPE_INDEX
521 _IMP_rotamer.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_rotamer)
522 IMP_HIERARCHY_TYPE_INDEX = _IMP_rotamer.IMP_HIERARCHY_TYPE_INDEX
525 _IMP_rotamer.IMP_ROTAMER_HAS_IMP_ALGEBRA_swigconstant(_IMP_rotamer)
526 IMP_ROTAMER_HAS_IMP_ALGEBRA = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_ALGEBRA
528 _IMP_rotamer.IMP_ROTAMER_HAS_IMP_CGAL_swigconstant(_IMP_rotamer)
529 IMP_ROTAMER_HAS_IMP_CGAL = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_CGAL
531 _IMP_rotamer.IMP_ROTAMER_HAS_IMP_CONTAINER_swigconstant(_IMP_rotamer)
532 IMP_ROTAMER_HAS_IMP_CONTAINER = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_CONTAINER
534 _IMP_rotamer.IMP_ROTAMER_HAS_IMP_DISPLAY_swigconstant(_IMP_rotamer)
535 IMP_ROTAMER_HAS_IMP_DISPLAY = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_DISPLAY
537 _IMP_rotamer.IMP_ROTAMER_HAS_IMP_KERNEL_swigconstant(_IMP_rotamer)
538 IMP_ROTAMER_HAS_IMP_KERNEL = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_KERNEL
540 _IMP_rotamer.IMP_ROTAMER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rotamer)
541 IMP_ROTAMER_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_SCORE_FUNCTOR
543 _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rotamer)
544 IMP_ROTAMER_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_FILESYSTEM
546 _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rotamer)
547 IMP_ROTAMER_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_PROGRAMOPTIONS
549 _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
550 IMP_ROTAMER_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_RANDOM
552 _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_REGEX_swigconstant(_IMP_rotamer)
553 IMP_ROTAMER_HAS_BOOST_REGEX = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_REGEX
555 _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_SYSTEM_swigconstant(_IMP_rotamer)
556 IMP_ROTAMER_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_SYSTEM
558 _IMP_rotamer.IMP_ROTAMER_HAS_CGAL_swigconstant(_IMP_rotamer)
559 IMP_ROTAMER_HAS_CGAL = _IMP_rotamer.IMP_ROTAMER_HAS_CGAL
561 _IMP_rotamer.IMP_ROTAMER_HAS_HDF5_swigconstant(_IMP_rotamer)
562 IMP_ROTAMER_HAS_HDF5 = _IMP_rotamer.IMP_ROTAMER_HAS_HDF5
564 _IMP_rotamer.IMPROTAMER_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
565 IMPROTAMER_SHOW_WARNINGS = _IMP_rotamer.IMPROTAMER_SHOW_WARNINGS
567 RotamerAngleTuples=list
568 _plural_types.append(
"RotamerAngleTuples")
569 _value_types.append(
"RotamerAngleTuple")
573 _plural_types.append(
"ResidueRotamers")
574 _value_types.append(
"ResidueRotamer")
577 _object_types.append(
"RotamerLibrary")
580 def _object_cast_to_RotamerLibrary(o):
581 """_object_cast_to_RotamerLibrary(Object o) -> RotamerLibrary"""
582 return _IMP_rotamer._object_cast_to_RotamerLibrary(o)
584 _object_types.append(
"RotamerCalculator")
587 def _object_cast_to_RotamerCalculator(o):
588 """_object_cast_to_RotamerCalculator(Object o) -> RotamerCalculator"""
589 return _IMP_rotamer._object_cast_to_RotamerCalculator(o)
590 class RotamerAngleTuple(object):
591 """Proxy of C++ IMP::rotamer::RotamerAngleTuple class"""
592 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
594 def __init__(self, *args):
596 __init__(IMP::rotamer::RotamerAngleTuple self) -> RotamerAngleTuple
597 __init__(IMP::rotamer::RotamerAngleTuple self, float chi1, float chi2, float chi3, float chi4, float probability) -> RotamerAngleTuple
599 this = _IMP_rotamer.new_RotamerAngleTuple(*args)
601 self.this.append(this)
606 """get_chi1(RotamerAngleTuple self) -> float"""
607 return _IMP_rotamer.RotamerAngleTuple_get_chi1(self)
611 """get_chi2(RotamerAngleTuple self) -> float"""
612 return _IMP_rotamer.RotamerAngleTuple_get_chi2(self)
616 """get_chi3(RotamerAngleTuple self) -> float"""
617 return _IMP_rotamer.RotamerAngleTuple_get_chi3(self)
621 """get_chi4(RotamerAngleTuple self) -> float"""
622 return _IMP_rotamer.RotamerAngleTuple_get_chi4(self)
625 def get_probability(self):
626 """get_probability(RotamerAngleTuple self) -> float"""
627 return _IMP_rotamer.RotamerAngleTuple_get_probability(self)
630 def show(self, *args):
632 show(RotamerAngleTuple self, _ostream out)
633 show(RotamerAngleTuple self)
635 return _IMP_rotamer.RotamerAngleTuple_show(self, *args)
639 """__str__(RotamerAngleTuple self) -> std::string"""
640 return _IMP_rotamer.RotamerAngleTuple___str__(self)
644 """__repr__(RotamerAngleTuple self) -> std::string"""
645 return _IMP_rotamer.RotamerAngleTuple___repr__(self)
647 __swig_destroy__ = _IMP_rotamer.delete_RotamerAngleTuple
648 __del__ =
lambda self:
None
649 RotamerAngleTuple_swigregister = _IMP_rotamer.RotamerAngleTuple_swigregister
650 RotamerAngleTuple_swigregister(RotamerAngleTuple)
653 """Proxy of C++ IMP::rotamer::RotamerLibrary class"""
654 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
656 def __init__(self, angle_step=10):
658 __init__(IMP::rotamer::RotamerLibrary self, unsigned int angle_step=10) -> RotamerLibrary
659 __init__(IMP::rotamer::RotamerLibrary self) -> RotamerLibrary
661 this = _IMP_rotamer.new_RotamerLibrary(angle_step)
663 self.this.append(this)
667 def get_rotamers(self, residue, phi, psi, probability_thr):
668 """get_rotamers(RotamerLibrary self, ResidueType residue, float phi, float psi, float probability_thr) -> IMP::rotamer::RotamerAngleTuples"""
669 return _IMP_rotamer.RotamerLibrary_get_rotamers(self, residue, phi, psi, probability_thr)
672 def read_library_file(self, lib_file_name):
673 """read_library_file(RotamerLibrary self, std::string const & lib_file_name)"""
674 return _IMP_rotamer.RotamerLibrary_read_library_file(self, lib_file_name)
677 def get_version_info(self):
678 """get_version_info(RotamerLibrary self) -> VersionInfo"""
679 return _IMP_rotamer.RotamerLibrary_get_version_info(self)
683 """__str__(RotamerLibrary self) -> std::string"""
684 return _IMP_rotamer.RotamerLibrary___str__(self)
688 """__repr__(RotamerLibrary self) -> std::string"""
689 return _IMP_rotamer.RotamerLibrary___repr__(self)
694 return _object_cast_to_RotamerLibrary(o)
696 RotamerLibrary_swigregister = _IMP_rotamer.RotamerLibrary_swigregister
697 RotamerLibrary_swigregister(RotamerLibrary)
699 class ResidueRotamer(object):
700 """Proxy of C++ IMP::rotamer::ResidueRotamer class"""
701 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
703 def __init__(self, *args):
705 __init__(IMP::rotamer::ResidueRotamer self, ResidueType rt) -> ResidueRotamer
706 __init__(IMP::rotamer::ResidueRotamer self) -> ResidueRotamer
708 this = _IMP_rotamer.new_ResidueRotamer(*args)
710 self.this.append(this)
714 def get_coordinates(self, index, at):
715 """get_coordinates(ResidueRotamer self, unsigned int index, AtomType at) -> Vector3D"""
716 return _IMP_rotamer.ResidueRotamer_get_coordinates(self, index, at)
719 def get_number_of_cases(self, at):
720 """get_number_of_cases(ResidueRotamer self, AtomType at) -> unsigned int"""
721 return _IMP_rotamer.ResidueRotamer_get_number_of_cases(self, at)
724 def get_atom_exists(self, at):
725 """get_atom_exists(ResidueRotamer self, AtomType at) -> bool"""
726 return _IMP_rotamer.ResidueRotamer_get_atom_exists(self, at)
730 """get_size(ResidueRotamer self) -> unsigned int"""
731 return _IMP_rotamer.ResidueRotamer_get_size(self)
734 def get_probability(self, index):
735 """get_probability(ResidueRotamer self, unsigned int index) -> double"""
736 return _IMP_rotamer.ResidueRotamer_get_probability(self, index)
739 def show(self, *args):
741 show(ResidueRotamer self, _ostream out)
742 show(ResidueRotamer self)
744 return _IMP_rotamer.ResidueRotamer_show(self, *args)
748 """__str__(ResidueRotamer self) -> std::string"""
749 return _IMP_rotamer.ResidueRotamer___str__(self)
753 """__repr__(ResidueRotamer self) -> std::string"""
754 return _IMP_rotamer.ResidueRotamer___repr__(self)
756 __swig_destroy__ = _IMP_rotamer.delete_ResidueRotamer
757 __del__ =
lambda self:
None
758 ResidueRotamer_swigregister = _IMP_rotamer.ResidueRotamer_swigregister
759 ResidueRotamer_swigregister(ResidueRotamer)
762 """Proxy of C++ IMP::rotamer::RotamerCalculator class"""
763 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
765 def __init__(self, rl):
766 """__init__(IMP::rotamer::RotamerCalculator self, RotamerLibrary rl) -> RotamerCalculator"""
767 this = _IMP_rotamer.new_RotamerCalculator(rl)
769 self.this.append(this)
773 def get_rotamer(self, rd, thr):
774 """get_rotamer(RotamerCalculator self, Residue rd, double thr) -> ResidueRotamer"""
775 return _IMP_rotamer.RotamerCalculator_get_rotamer(self, rd, thr)
778 def get_version_info(self):
779 """get_version_info(RotamerCalculator self) -> VersionInfo"""
780 return _IMP_rotamer.RotamerCalculator_get_version_info(self)
783 def transform(self, protein, score, thr, K, num_iter):
784 """transform(RotamerCalculator self, Hierarchy protein, PairScore score, double thr, double K, int num_iter)"""
785 return _IMP_rotamer.RotamerCalculator_transform(self, protein, score, thr, K, num_iter)
789 """__str__(RotamerCalculator self) -> std::string"""
790 return _IMP_rotamer.RotamerCalculator___str__(self)
794 """__repr__(RotamerCalculator self) -> std::string"""
795 return _IMP_rotamer.RotamerCalculator___repr__(self)
800 return _object_cast_to_RotamerCalculator(o)
802 RotamerCalculator_swigregister = _IMP_rotamer.RotamerCalculator_swigregister
803 RotamerCalculator_swigregister(RotamerCalculator)
806 def get_module_version():
807 """get_module_version() -> std::string const"""
808 return _IMP_rotamer.get_module_version()
811 """get_example_path(std::string fname) -> std::string"""
812 return _IMP_rotamer.get_example_path(fname)
815 """get_data_path(std::string fname) -> std::string"""
816 return _IMP_rotamer.get_data_path(fname)
818 from .
import _version_check
819 _version_check.check_version(get_module_version())
820 __version__ = get_module_version()
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Composable functors to implement scores via compile-time composition.
void transform(Hierarchy h, const algebra::Transformation3D &tr)
Transform a hierarchy. This is aware of rigid bodies.
Common base class for heavy weight IMP objects.
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.