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IMP Reference Guide  2.6.1
The Integrative Modeling Platform
pepdock/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2016 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_pepdock', [dirname(__file__)])
23  except ImportError:
24  import _IMP_pepdock
25  return _IMP_pepdock
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_pepdock', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_pepdock = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_pepdock
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_PEPDOCK_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_PEPDOCK_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_pepdock.delete_IMP_PEPDOCK_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
125  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_PEPDOCK_SwigPyIterator self, size_t n=1) -> IMP_PEPDOCK_SwigPyIterator
131  incr(IMP_PEPDOCK_SwigPyIterator self) -> IMP_PEPDOCK_SwigPyIterator
132  """
133  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_PEPDOCK_SwigPyIterator self, size_t n=1) -> IMP_PEPDOCK_SwigPyIterator
139  decr(IMP_PEPDOCK_SwigPyIterator self) -> IMP_PEPDOCK_SwigPyIterator
140  """
141  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> bool"""
151  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_PEPDOCK_SwigPyIterator self) -> IMP_PEPDOCK_SwigPyIterator"""
156  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
161  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
166  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
171  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
176  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> bool"""
181  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> bool"""
186  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
191  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
196  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
201  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator
207  __sub__(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_PEPDOCK_SwigPyIterator_swigregister = _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_swigregister
214 IMP_PEPDOCK_SwigPyIterator_swigregister(IMP_PEPDOCK_SwigPyIterator)
215 
216 
217 _value_types=[]
218 _object_types=[]
219 _raii_types=[]
220 _plural_types=[]
221 
222 
223 _IMP_pepdock.IMP_DEBUG_swigconstant(_IMP_pepdock)
224 IMP_DEBUG = _IMP_pepdock.IMP_DEBUG
225 
226 _IMP_pepdock.IMP_RELEASE_swigconstant(_IMP_pepdock)
227 IMP_RELEASE = _IMP_pepdock.IMP_RELEASE
228 
229 _IMP_pepdock.IMP_SILENT_swigconstant(_IMP_pepdock)
230 IMP_SILENT = _IMP_pepdock.IMP_SILENT
231 
232 _IMP_pepdock.IMP_PROGRESS_swigconstant(_IMP_pepdock)
233 IMP_PROGRESS = _IMP_pepdock.IMP_PROGRESS
234 
235 _IMP_pepdock.IMP_TERSE_swigconstant(_IMP_pepdock)
236 IMP_TERSE = _IMP_pepdock.IMP_TERSE
237 
238 _IMP_pepdock.IMP_VERBOSE_swigconstant(_IMP_pepdock)
239 IMP_VERBOSE = _IMP_pepdock.IMP_VERBOSE
240 
241 _IMP_pepdock.IMP_MEMORY_swigconstant(_IMP_pepdock)
242 IMP_MEMORY = _IMP_pepdock.IMP_MEMORY
243 
244 _IMP_pepdock.IMP_NONE_swigconstant(_IMP_pepdock)
245 IMP_NONE = _IMP_pepdock.IMP_NONE
246 
247 _IMP_pepdock.IMP_USAGE_swigconstant(_IMP_pepdock)
248 IMP_USAGE = _IMP_pepdock.IMP_USAGE
249 
250 _IMP_pepdock.IMP_INTERNAL_swigconstant(_IMP_pepdock)
251 IMP_INTERNAL = _IMP_pepdock.IMP_INTERNAL
252 
253 _IMP_pepdock.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_pepdock)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_pepdock.IMP_KERNEL_HAS_LOG4CXX
255 
256 _IMP_pepdock.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_pepdock)
257 IMP_COMPILER_HAS_AUTO = _IMP_pepdock.IMP_COMPILER_HAS_AUTO
258 
259 _IMP_pepdock.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_pepdock)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_pepdock.IMP_COMPILER_HAS_DEBUG_VECTOR
261 
262 _IMP_pepdock.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_pepdock)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_pepdock.IMP_COMPILER_HAS_UNIQUE_PTR
264 
265 _IMP_pepdock.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_KERNEL_HAS_BOOST_RANDOM
267 
268 _IMP_pepdock.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_pepdock)
269 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_pepdock.IMP_KERNEL_HAS_GPERFTOOLS
270 
271 _IMP_pepdock.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_pepdock)
272 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_pepdock.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
273 
274 _IMP_pepdock.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_pepdock)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_pepdock.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
276 
277 _IMP_pepdock.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
278 IMPKERNEL_SHOW_WARNINGS = _IMP_pepdock.IMPKERNEL_SHOW_WARNINGS
279 
280 import sys
281 class _DirectorObjects(object):
282  """@internal Simple class to keep references to director objects
283  to prevent premature deletion."""
284  def __init__(self):
285  self._objects = []
286  def register(self, obj):
287  """Take a reference to a director object; will only work for
288  refcounted C++ classes"""
289  if hasattr(obj, 'get_ref_count'):
290  self._objects.append(obj)
291  def cleanup(self):
292  """Only drop our reference and allow cleanup by Python if no other
293  Python references exist (we hold 3 references: one in self._objects,
294  one in x, and one in the argument list for getrefcount) *and* no
295  other C++ references exist (the Python object always holds one)"""
296  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
297  or x.get_ref_count() > 1]
298 # Do in two steps so the references are kept until the end of the
299 # function (deleting references may trigger a fresh call to this method)
300  self._objects = objs
301  def get_object_count(self):
302  """Get number of director objects (useful for testing only)"""
303  return len(self._objects)
304 _director_objects = _DirectorObjects()
305 
306 class _ostream(object):
307  """Proxy of C++ std::ostream class"""
308  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
309 
310  def __init__(self, *args, **kwargs):
311  raise AttributeError("No constructor defined")
312  __repr__ = _swig_repr
313 
314  def write(self, osa_buf):
315  """write(_ostream self, char const * osa_buf)"""
316  return _IMP_pepdock._ostream_write(self, osa_buf)
317 
318 _ostream_swigregister = _IMP_pepdock._ostream_swigregister
319 _ostream_swigregister(_ostream)
320 
321 
322 _IMP_pepdock.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_pepdock)
323 IMP_COMPILER_HAS_OVERRIDE = _IMP_pepdock.IMP_COMPILER_HAS_OVERRIDE
324 
325 _IMP_pepdock.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_pepdock)
326 IMP_COMPILER_HAS_FINAL = _IMP_pepdock.IMP_COMPILER_HAS_FINAL
327 
328 _IMP_pepdock.IMP_HAS_NOEXCEPT_swigconstant(_IMP_pepdock)
329 IMP_HAS_NOEXCEPT = _IMP_pepdock.IMP_HAS_NOEXCEPT
330 import IMP
331 
332 _IMP_pepdock.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
333 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_CGAL_HAS_BOOST_FILESYSTEM
334 
335 _IMP_pepdock.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
336 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
337 
338 _IMP_pepdock.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
339 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_CGAL_HAS_BOOST_RANDOM
340 
341 _IMP_pepdock.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
342 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_CGAL_HAS_BOOST_SYSTEM
343 
344 _IMP_pepdock.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
345 IMPCGAL_SHOW_WARNINGS = _IMP_pepdock.IMPCGAL_SHOW_WARNINGS
346 import IMP.cgal
347 
348 _IMP_pepdock.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
349 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_pepdock.IMP_ALGEBRA_HAS_IMP_CGAL
350 
351 _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
352 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
353 
354 _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
355 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
356 
357 _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
358 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_RANDOM
359 
360 _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
361 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_SYSTEM
362 
363 _IMP_pepdock.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_pepdock)
364 IMP_ALGEBRA_HAS_CGAL = _IMP_pepdock.IMP_ALGEBRA_HAS_CGAL
365 
366 _IMP_pepdock.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_pepdock)
367 IMP_ALGEBRA_HAS_ANN = _IMP_pepdock.IMP_ALGEBRA_HAS_ANN
368 
369 _IMP_pepdock.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
370 IMPALGEBRA_SHOW_WARNINGS = _IMP_pepdock.IMPALGEBRA_SHOW_WARNINGS
371 import IMP.algebra
372 
373 _IMP_pepdock.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
374 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_pepdock.IMP_DISPLAY_HAS_IMP_CGAL
375 
376 _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
377 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
378 
379 _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
380 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
381 
382 _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
383 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_RANDOM
384 
385 _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
386 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_SYSTEM
387 
388 _IMP_pepdock.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_pepdock)
389 IMP_DISPLAY_HAS_CGAL = _IMP_pepdock.IMP_DISPLAY_HAS_CGAL
390 
391 _IMP_pepdock.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
392 IMPDISPLAY_SHOW_WARNINGS = _IMP_pepdock.IMPDISPLAY_SHOW_WARNINGS
393 import IMP.display
394 
395 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
396 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
397 
398 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
399 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
400 
401 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
402 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
403 
404 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
405 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
406 
407 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
408 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
409 
410 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_pepdock)
411 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_CGAL
412 
413 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_pepdock)
414 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_HDF5
415 
416 _IMP_pepdock.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
417 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_pepdock.IMPSCOREFUNCTOR_SHOW_WARNINGS
418 import IMP.score_functor
419 
420 _IMP_pepdock.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
421 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_pepdock.IMP_STATISTICS_HAS_IMP_CGAL
422 
423 _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
424 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
425 
426 _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
427 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
428 
429 _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
430 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_RANDOM
431 
432 _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
433 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_SYSTEM
434 
435 _IMP_pepdock.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_pepdock)
436 IMP_STATISTICS_HAS_CGAL = _IMP_pepdock.IMP_STATISTICS_HAS_CGAL
437 
438 _IMP_pepdock.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
439 IMPSTATISTICS_SHOW_WARNINGS = _IMP_pepdock.IMPSTATISTICS_SHOW_WARNINGS
440 import IMP.statistics
441 
442 _IMP_pepdock.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
443 IMP_CORE_HAS_IMP_CGAL = _IMP_pepdock.IMP_CORE_HAS_IMP_CGAL
444 
445 _IMP_pepdock.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_pepdock)
446 IMP_CORE_HAS_IMP_KERNEL = _IMP_pepdock.IMP_CORE_HAS_IMP_KERNEL
447 
448 _IMP_pepdock.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
449 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_CORE_HAS_BOOST_FILESYSTEM
450 
451 _IMP_pepdock.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
452 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
453 
454 _IMP_pepdock.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
455 IMP_CORE_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_CORE_HAS_BOOST_RANDOM
456 
457 _IMP_pepdock.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
458 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_CORE_HAS_BOOST_SYSTEM
459 
460 _IMP_pepdock.IMP_CORE_HAS_CGAL_swigconstant(_IMP_pepdock)
461 IMP_CORE_HAS_CGAL = _IMP_pepdock.IMP_CORE_HAS_CGAL
462 
463 _IMP_pepdock.IMP_CORE_HAS_HDF5_swigconstant(_IMP_pepdock)
464 IMP_CORE_HAS_HDF5 = _IMP_pepdock.IMP_CORE_HAS_HDF5
465 
466 _IMP_pepdock.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
467 IMPCORE_SHOW_WARNINGS = _IMP_pepdock.IMPCORE_SHOW_WARNINGS
468 import IMP.core
469 
470 _IMP_pepdock.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_pepdock)
471 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_ALGEBRA
472 
473 _IMP_pepdock.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
474 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_CGAL
475 
476 _IMP_pepdock.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_pepdock)
477 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_DISPLAY
478 
479 _IMP_pepdock.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_pepdock)
480 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_KERNEL
481 
482 _IMP_pepdock.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_pepdock)
483 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
484 
485 _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
486 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
487 
488 _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
489 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
490 
491 _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
492 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_RANDOM
493 
494 _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
495 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_SYSTEM
496 
497 _IMP_pepdock.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_pepdock)
498 IMP_CONTAINER_HAS_CGAL = _IMP_pepdock.IMP_CONTAINER_HAS_CGAL
499 
500 _IMP_pepdock.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_pepdock)
501 IMP_CONTAINER_HAS_HDF5 = _IMP_pepdock.IMP_CONTAINER_HAS_HDF5
502 
503 _IMP_pepdock.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
504 IMPCONTAINER_SHOW_WARNINGS = _IMP_pepdock.IMPCONTAINER_SHOW_WARNINGS
505 import IMP.container
506 
507 _IMP_pepdock.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
508 IMP_ATOM_HAS_IMP_CGAL = _IMP_pepdock.IMP_ATOM_HAS_IMP_CGAL
509 
510 _IMP_pepdock.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_pepdock)
511 IMP_ATOM_HAS_IMP_KERNEL = _IMP_pepdock.IMP_ATOM_HAS_IMP_KERNEL
512 
513 _IMP_pepdock.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_pepdock)
514 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
515 
516 _IMP_pepdock.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
517 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
518 
519 _IMP_pepdock.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
520 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_ATOM_HAS_BOOST_RANDOM
521 
522 _IMP_pepdock.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_pepdock)
523 IMP_ATOM_HAS_BOOST_REGEX = _IMP_pepdock.IMP_ATOM_HAS_BOOST_REGEX
524 
525 _IMP_pepdock.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
526 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_ATOM_HAS_BOOST_SYSTEM
527 
528 _IMP_pepdock.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_pepdock)
529 IMP_ATOM_HAS_CGAL = _IMP_pepdock.IMP_ATOM_HAS_CGAL
530 
531 _IMP_pepdock.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_pepdock)
532 IMP_ATOM_HAS_HDF5 = _IMP_pepdock.IMP_ATOM_HAS_HDF5
533 
534 _IMP_pepdock.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
535 IMPATOM_SHOW_WARNINGS = _IMP_pepdock.IMPATOM_SHOW_WARNINGS
536 
537 _IMP_pepdock.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_pepdock)
538 IMP_ATOM_TYPE_INDEX = _IMP_pepdock.IMP_ATOM_TYPE_INDEX
539 
540 _IMP_pepdock.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_pepdock)
541 IMP_RESIDUE_TYPE_INDEX = _IMP_pepdock.IMP_RESIDUE_TYPE_INDEX
542 
543 _IMP_pepdock.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_pepdock)
544 IMP_HIERARCHY_TYPE_INDEX = _IMP_pepdock.IMP_HIERARCHY_TYPE_INDEX
545 import IMP.atom
546 
547 _IMP_pepdock.IMP_RMF_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
548 IMP_RMF_HAS_IMP_CGAL = _IMP_pepdock.IMP_RMF_HAS_IMP_CGAL
549 
550 _IMP_pepdock.IMP_RMF_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_pepdock)
551 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
552 
553 _IMP_pepdock.IMP_RMF_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
554 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_RMF_HAS_BOOST_FILESYSTEM
555 
556 _IMP_pepdock.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
557 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
558 
559 _IMP_pepdock.IMP_RMF_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
560 IMP_RMF_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_RMF_HAS_BOOST_RANDOM
561 
562 _IMP_pepdock.IMP_RMF_HAS_BOOST_REGEX_swigconstant(_IMP_pepdock)
563 IMP_RMF_HAS_BOOST_REGEX = _IMP_pepdock.IMP_RMF_HAS_BOOST_REGEX
564 
565 _IMP_pepdock.IMP_RMF_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
566 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_RMF_HAS_BOOST_SYSTEM
567 
568 _IMP_pepdock.IMP_RMF_HAS_CGAL_swigconstant(_IMP_pepdock)
569 IMP_RMF_HAS_CGAL = _IMP_pepdock.IMP_RMF_HAS_CGAL
570 
571 _IMP_pepdock.IMP_RMF_HAS_HDF5_swigconstant(_IMP_pepdock)
572 IMP_RMF_HAS_HDF5 = _IMP_pepdock.IMP_RMF_HAS_HDF5
573 
574 _IMP_pepdock.IMPRMF_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
575 IMPRMF_SHOW_WARNINGS = _IMP_pepdock.IMPRMF_SHOW_WARNINGS
576 import IMP.rmf
577 import RMF
578 
579 _IMP_pepdock.IMP_DOMINO_HAS_IMP_ATOM_swigconstant(_IMP_pepdock)
580 IMP_DOMINO_HAS_IMP_ATOM = _IMP_pepdock.IMP_DOMINO_HAS_IMP_ATOM
581 
582 _IMP_pepdock.IMP_DOMINO_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
583 IMP_DOMINO_HAS_IMP_CGAL = _IMP_pepdock.IMP_DOMINO_HAS_IMP_CGAL
584 
585 _IMP_pepdock.IMP_DOMINO_HAS_IMP_KERNEL_swigconstant(_IMP_pepdock)
586 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_pepdock.IMP_DOMINO_HAS_IMP_KERNEL
587 
588 _IMP_pepdock.IMP_DOMINO_HAS_IMP_RMF_swigconstant(_IMP_pepdock)
589 IMP_DOMINO_HAS_IMP_RMF = _IMP_pepdock.IMP_DOMINO_HAS_IMP_RMF
590 
591 _IMP_pepdock.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_pepdock)
592 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
593 
594 _IMP_pepdock.IMP_DOMINO_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
595 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_FILESYSTEM
596 
597 _IMP_pepdock.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
598 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
599 
600 _IMP_pepdock.IMP_DOMINO_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
601 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_RANDOM
602 
603 _IMP_pepdock.IMP_DOMINO_HAS_BOOST_REGEX_swigconstant(_IMP_pepdock)
604 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_REGEX
605 
606 _IMP_pepdock.IMP_DOMINO_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
607 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_SYSTEM
608 
609 _IMP_pepdock.IMP_DOMINO_HAS_CGAL_swigconstant(_IMP_pepdock)
610 IMP_DOMINO_HAS_CGAL = _IMP_pepdock.IMP_DOMINO_HAS_CGAL
611 
612 _IMP_pepdock.IMP_DOMINO_HAS_HDF5_swigconstant(_IMP_pepdock)
613 IMP_DOMINO_HAS_HDF5 = _IMP_pepdock.IMP_DOMINO_HAS_HDF5
614 
615 _IMP_pepdock.IMP_DOMINO_HAS_RMF_swigconstant(_IMP_pepdock)
616 IMP_DOMINO_HAS_RMF = _IMP_pepdock.IMP_DOMINO_HAS_RMF
617 
618 _IMP_pepdock.IMPDOMINO_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
619 IMPDOMINO_SHOW_WARNINGS = _IMP_pepdock.IMPDOMINO_SHOW_WARNINGS
620 import RMF_HDF5
621 import IMP.domino
622 
623 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_ALGEBRA_swigconstant(_IMP_pepdock)
624 IMP_PEPDOCK_HAS_IMP_ALGEBRA = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_ALGEBRA
625 
626 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_ATOM_swigconstant(_IMP_pepdock)
627 IMP_PEPDOCK_HAS_IMP_ATOM = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_ATOM
628 
629 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
630 IMP_PEPDOCK_HAS_IMP_CGAL = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_CGAL
631 
632 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_DISPLAY_swigconstant(_IMP_pepdock)
633 IMP_PEPDOCK_HAS_IMP_DISPLAY = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_DISPLAY
634 
635 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_KERNEL_swigconstant(_IMP_pepdock)
636 IMP_PEPDOCK_HAS_IMP_KERNEL = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_KERNEL
637 
638 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_RMF_swigconstant(_IMP_pepdock)
639 IMP_PEPDOCK_HAS_IMP_RMF = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_RMF
640 
641 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_pepdock)
642 IMP_PEPDOCK_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_SCORE_FUNCTOR
643 
644 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_STATISTICS_swigconstant(_IMP_pepdock)
645 IMP_PEPDOCK_HAS_IMP_STATISTICS = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_STATISTICS
646 
647 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
648 IMP_PEPDOCK_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_FILESYSTEM
649 
650 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_GRAPH_swigconstant(_IMP_pepdock)
651 IMP_PEPDOCK_HAS_BOOST_GRAPH = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_GRAPH
652 
653 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
654 IMP_PEPDOCK_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_PROGRAMOPTIONS
655 
656 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
657 IMP_PEPDOCK_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_RANDOM
658 
659 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_REGEX_swigconstant(_IMP_pepdock)
660 IMP_PEPDOCK_HAS_BOOST_REGEX = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_REGEX
661 
662 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
663 IMP_PEPDOCK_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_SYSTEM
664 
665 _IMP_pepdock.IMP_PEPDOCK_HAS_CGAL_swigconstant(_IMP_pepdock)
666 IMP_PEPDOCK_HAS_CGAL = _IMP_pepdock.IMP_PEPDOCK_HAS_CGAL
667 
668 _IMP_pepdock.IMP_PEPDOCK_HAS_HDF5_swigconstant(_IMP_pepdock)
669 IMP_PEPDOCK_HAS_HDF5 = _IMP_pepdock.IMP_PEPDOCK_HAS_HDF5
670 
671 _IMP_pepdock.IMP_PEPDOCK_HAS_RMF_swigconstant(_IMP_pepdock)
672 IMP_PEPDOCK_HAS_RMF = _IMP_pepdock.IMP_PEPDOCK_HAS_RMF
673 
674 _IMP_pepdock.IMPPEPDOCK_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
675 IMPPEPDOCK_SHOW_WARNINGS = _IMP_pepdock.IMPPEPDOCK_SHOW_WARNINGS
676 
677 def get_module_version():
678  """get_module_version() -> std::string const"""
679  return _IMP_pepdock.get_module_version()
680 
681 def get_example_path(fname):
682  """get_example_path(std::string fname) -> std::string"""
683  return _IMP_pepdock.get_example_path(fname)
684 
685 def get_data_path(fname):
686  """get_data_path(std::string fname) -> std::string"""
687  return _IMP_pepdock.get_data_path(fname)
688 
689 from . import _version_check
690 _version_check.check_version(get_module_version())
691 __version__ = get_module_version()
692 
693 
694 
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
Composable functors to implement scores via compile-time composition.
def __init__
Constructor.
Code to compute statistical measures.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
Support for the RMF file format for storing hierarchical molecular data and markup.
Divide-and-conquer inferential optimization in discrete space.