10 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
16 if version_info >= (2, 6, 0):
17 def swig_import_helper():
18 from os.path
import dirname
22 fp, pathname, description = imp.find_module(
'_IMP_kmeans', [dirname(__file__)])
28 _mod = imp.load_module(
'_IMP_kmeans', fp, pathname, description)
32 _IMP_kmeans = swig_import_helper()
33 del swig_import_helper
38 _swig_property = property
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44 if (name ==
"thisown"):
45 return self.this.own(value)
47 if type(value).__name__ ==
'SwigPyObject':
48 self.__dict__[name] = value
50 method = class_type.__swig_setmethods__.get(name,
None)
52 return method(self, value)
54 object.__setattr__(self, name, value)
56 raise AttributeError(
"You cannot add attributes to %s" % self)
59 def _swig_setattr(self, class_type, name, value):
60 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64 if (name ==
"thisown"):
65 return self.this.own()
66 method = class_type.__swig_getmethods__.get(name,
None)
70 return object.__getattr__(self, name)
72 raise AttributeError(name)
74 def _swig_getattr(self, class_type, name):
75 return _swig_getattr_nondynamic(self, class_type, name, 0)
80 strthis =
"proxy of " + self.this.__repr__()
83 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
88 except AttributeError:
95 def _swig_setattr_nondynamic_method(set):
96 def set_attr(self, name, value):
97 if (name ==
"thisown"):
98 return self.this.own(value)
99 if hasattr(self, name)
or (name ==
"this"):
100 set(self, name, value)
102 raise AttributeError(
"You cannot add attributes to %s" % self)
108 weakref_proxy = weakref.proxy
110 weakref_proxy =
lambda x: x
113 class IMP_KMEANS_SwigPyIterator(object):
114 """Proxy of C++ swig::IMP_KMEANS_SwigPyIterator class"""
115 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
117 def __init__(self, *args, **kwargs):
118 raise AttributeError(
"No constructor defined - class is abstract")
119 __repr__ = _swig_repr
120 __swig_destroy__ = _IMP_kmeans.delete_IMP_KMEANS_SwigPyIterator
121 __del__ =
lambda self:
None
124 """value(IMP_KMEANS_SwigPyIterator self) -> PyObject *"""
125 return _IMP_kmeans.IMP_KMEANS_SwigPyIterator_value(self)
130 incr(IMP_KMEANS_SwigPyIterator self, size_t n=1) -> IMP_KMEANS_SwigPyIterator
131 incr(IMP_KMEANS_SwigPyIterator self) -> IMP_KMEANS_SwigPyIterator
133 return _IMP_kmeans.IMP_KMEANS_SwigPyIterator_incr(self, n)
138 decr(IMP_KMEANS_SwigPyIterator self, size_t n=1) -> IMP_KMEANS_SwigPyIterator
139 decr(IMP_KMEANS_SwigPyIterator self) -> IMP_KMEANS_SwigPyIterator
141 return _IMP_kmeans.IMP_KMEANS_SwigPyIterator_decr(self, n)
144 def distance(self, x):
145 """distance(IMP_KMEANS_SwigPyIterator self, IMP_KMEANS_SwigPyIterator x) -> ptrdiff_t"""
146 return _IMP_kmeans.IMP_KMEANS_SwigPyIterator_distance(self, x)
150 """equal(IMP_KMEANS_SwigPyIterator self, IMP_KMEANS_SwigPyIterator x) -> bool"""
151 return _IMP_kmeans.IMP_KMEANS_SwigPyIterator_equal(self, x)
155 """copy(IMP_KMEANS_SwigPyIterator self) -> IMP_KMEANS_SwigPyIterator"""
156 return _IMP_kmeans.IMP_KMEANS_SwigPyIterator_copy(self)
160 """next(IMP_KMEANS_SwigPyIterator self) -> PyObject *"""
161 return _IMP_kmeans.IMP_KMEANS_SwigPyIterator_next(self)
165 """__next__(IMP_KMEANS_SwigPyIterator self) -> PyObject *"""
166 return _IMP_kmeans.IMP_KMEANS_SwigPyIterator___next__(self)
170 """previous(IMP_KMEANS_SwigPyIterator self) -> PyObject *"""
171 return _IMP_kmeans.IMP_KMEANS_SwigPyIterator_previous(self)
174 def advance(self, n):
175 """advance(IMP_KMEANS_SwigPyIterator self, ptrdiff_t n) -> IMP_KMEANS_SwigPyIterator"""
176 return _IMP_kmeans.IMP_KMEANS_SwigPyIterator_advance(self, n)
180 """__eq__(IMP_KMEANS_SwigPyIterator self, IMP_KMEANS_SwigPyIterator x) -> bool"""
181 return _IMP_kmeans.IMP_KMEANS_SwigPyIterator___eq__(self, x)
185 """__ne__(IMP_KMEANS_SwigPyIterator self, IMP_KMEANS_SwigPyIterator x) -> bool"""
186 return _IMP_kmeans.IMP_KMEANS_SwigPyIterator___ne__(self, x)
189 def __iadd__(self, n):
190 """__iadd__(IMP_KMEANS_SwigPyIterator self, ptrdiff_t n) -> IMP_KMEANS_SwigPyIterator"""
191 return _IMP_kmeans.IMP_KMEANS_SwigPyIterator___iadd__(self, n)
194 def __isub__(self, n):
195 """__isub__(IMP_KMEANS_SwigPyIterator self, ptrdiff_t n) -> IMP_KMEANS_SwigPyIterator"""
196 return _IMP_kmeans.IMP_KMEANS_SwigPyIterator___isub__(self, n)
199 def __add__(self, n):
200 """__add__(IMP_KMEANS_SwigPyIterator self, ptrdiff_t n) -> IMP_KMEANS_SwigPyIterator"""
201 return _IMP_kmeans.IMP_KMEANS_SwigPyIterator___add__(self, n)
204 def __sub__(self, *args):
206 __sub__(IMP_KMEANS_SwigPyIterator self, ptrdiff_t n) -> IMP_KMEANS_SwigPyIterator
207 __sub__(IMP_KMEANS_SwigPyIterator self, IMP_KMEANS_SwigPyIterator x) -> ptrdiff_t
209 return _IMP_kmeans.IMP_KMEANS_SwigPyIterator___sub__(self, *args)
213 IMP_KMEANS_SwigPyIterator_swigregister = _IMP_kmeans.IMP_KMEANS_SwigPyIterator_swigregister
214 IMP_KMEANS_SwigPyIterator_swigregister(IMP_KMEANS_SwigPyIterator)
223 _IMP_kmeans.IMP_DEBUG_swigconstant(_IMP_kmeans)
224 IMP_DEBUG = _IMP_kmeans.IMP_DEBUG
226 _IMP_kmeans.IMP_RELEASE_swigconstant(_IMP_kmeans)
227 IMP_RELEASE = _IMP_kmeans.IMP_RELEASE
229 _IMP_kmeans.IMP_SILENT_swigconstant(_IMP_kmeans)
230 IMP_SILENT = _IMP_kmeans.IMP_SILENT
232 _IMP_kmeans.IMP_PROGRESS_swigconstant(_IMP_kmeans)
233 IMP_PROGRESS = _IMP_kmeans.IMP_PROGRESS
235 _IMP_kmeans.IMP_TERSE_swigconstant(_IMP_kmeans)
236 IMP_TERSE = _IMP_kmeans.IMP_TERSE
238 _IMP_kmeans.IMP_VERBOSE_swigconstant(_IMP_kmeans)
239 IMP_VERBOSE = _IMP_kmeans.IMP_VERBOSE
241 _IMP_kmeans.IMP_MEMORY_swigconstant(_IMP_kmeans)
242 IMP_MEMORY = _IMP_kmeans.IMP_MEMORY
244 _IMP_kmeans.IMP_NONE_swigconstant(_IMP_kmeans)
245 IMP_NONE = _IMP_kmeans.IMP_NONE
247 _IMP_kmeans.IMP_USAGE_swigconstant(_IMP_kmeans)
248 IMP_USAGE = _IMP_kmeans.IMP_USAGE
250 _IMP_kmeans.IMP_INTERNAL_swigconstant(_IMP_kmeans)
251 IMP_INTERNAL = _IMP_kmeans.IMP_INTERNAL
253 _IMP_kmeans.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_kmeans)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_kmeans.IMP_KERNEL_HAS_LOG4CXX
256 _IMP_kmeans.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_kmeans)
257 IMP_COMPILER_HAS_AUTO = _IMP_kmeans.IMP_COMPILER_HAS_AUTO
259 _IMP_kmeans.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_kmeans)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_kmeans.IMP_COMPILER_HAS_DEBUG_VECTOR
262 _IMP_kmeans.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_kmeans)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_kmeans.IMP_COMPILER_HAS_UNIQUE_PTR
265 _IMP_kmeans.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_kmeans)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_kmeans.IMP_KERNEL_HAS_BOOST_RANDOM
268 _IMP_kmeans.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_kmeans)
269 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_kmeans.IMP_KERNEL_HAS_GPERFTOOLS
271 _IMP_kmeans.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_kmeans)
272 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_kmeans.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
274 _IMP_kmeans.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_kmeans)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_kmeans.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
277 _IMP_kmeans.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_kmeans)
278 IMPKERNEL_SHOW_WARNINGS = _IMP_kmeans.IMPKERNEL_SHOW_WARNINGS
281 class _DirectorObjects(object):
282 """@internal Simple class to keep references to director objects
283 to prevent premature deletion."""
286 def register(self, obj):
287 """Take a reference to a director object; will only work for
288 refcounted C++ classes"""
289 if hasattr(obj,
'get_ref_count'):
290 self._objects.append(obj)
292 """Only drop our reference and allow cleanup by Python if no other
293 Python references exist (we hold 3 references: one in self._objects,
294 one in x, and one in the argument list for getrefcount) *and* no
295 other C++ references exist (the Python object always holds one)"""
296 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
297 or x.get_ref_count() > 1]
301 def get_object_count(self):
302 """Get number of director objects (useful for testing only)"""
303 return len(self._objects)
304 _director_objects = _DirectorObjects()
306 class _ostream(object):
307 """Proxy of C++ std::ostream class"""
308 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
310 def __init__(self, *args, **kwargs):
311 raise AttributeError(
"No constructor defined")
312 __repr__ = _swig_repr
314 def write(self, osa_buf):
315 """write(_ostream self, char const * osa_buf)"""
316 return _IMP_kmeans._ostream_write(self, osa_buf)
318 _ostream_swigregister = _IMP_kmeans._ostream_swigregister
319 _ostream_swigregister(_ostream)
322 _IMP_kmeans.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_kmeans)
323 IMP_COMPILER_HAS_OVERRIDE = _IMP_kmeans.IMP_COMPILER_HAS_OVERRIDE
325 _IMP_kmeans.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_kmeans)
326 IMP_COMPILER_HAS_FINAL = _IMP_kmeans.IMP_COMPILER_HAS_FINAL
328 _IMP_kmeans.IMP_HAS_NOEXCEPT_swigconstant(_IMP_kmeans)
329 IMP_HAS_NOEXCEPT = _IMP_kmeans.IMP_HAS_NOEXCEPT
332 _IMP_kmeans.IMP_KMEANS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_kmeans)
333 IMP_KMEANS_HAS_BOOST_FILESYSTEM = _IMP_kmeans.IMP_KMEANS_HAS_BOOST_FILESYSTEM
335 _IMP_kmeans.IMP_KMEANS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_kmeans)
336 IMP_KMEANS_HAS_BOOST_PROGRAMOPTIONS = _IMP_kmeans.IMP_KMEANS_HAS_BOOST_PROGRAMOPTIONS
338 _IMP_kmeans.IMP_KMEANS_HAS_BOOST_RANDOM_swigconstant(_IMP_kmeans)
339 IMP_KMEANS_HAS_BOOST_RANDOM = _IMP_kmeans.IMP_KMEANS_HAS_BOOST_RANDOM
341 _IMP_kmeans.IMP_KMEANS_HAS_BOOST_SYSTEM_swigconstant(_IMP_kmeans)
342 IMP_KMEANS_HAS_BOOST_SYSTEM = _IMP_kmeans.IMP_KMEANS_HAS_BOOST_SYSTEM
344 _IMP_kmeans.IMPKMEANS_SHOW_WARNINGS_swigconstant(_IMP_kmeans)
345 IMPKMEANS_SHOW_WARNINGS = _IMP_kmeans.IMPKMEANS_SHOW_WARNINGS
347 _object_types.append(
"KMeans")
350 def _object_cast_to_KMeans(o):
351 """_object_cast_to_KMeans(Object o) -> KMeans"""
352 return _IMP_kmeans._object_cast_to_KMeans(o)
354 _IMP_kmeans.KM_LLOYDS_swigconstant(_IMP_kmeans)
355 KM_LLOYDS = _IMP_kmeans.KM_LLOYDS
357 _IMP_kmeans.KM_LOCAL_SWAP_swigconstant(_IMP_kmeans)
358 KM_LOCAL_SWAP = _IMP_kmeans.KM_LOCAL_SWAP
360 _IMP_kmeans.KM_LOCAL_EZ_HYBRID_swigconstant(_IMP_kmeans)
361 KM_LOCAL_EZ_HYBRID = _IMP_kmeans.KM_LOCAL_EZ_HYBRID
363 _IMP_kmeans.KM_HYBRID_swigconstant(_IMP_kmeans)
364 KM_HYBRID = _IMP_kmeans.KM_HYBRID
366 """Proxy of C++ IMP::kmeans::KMeans class"""
367 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
369 def __init__(self, *args):
371 __init__(IMP::kmeans::KMeans self, std::string const & fname_data, int dim, unsigned int max_nPts) -> KMeans
372 __init__(IMP::kmeans::KMeans self) -> KMeans
374 this = _IMP_kmeans.new_KMeans(*args)
376 self.this.append(this)
381 """get_version_info(KMeans self) -> VersionInfo"""
382 return _IMP_kmeans.KMeans_get_version_info(self)
385 def execute(self, *args):
387 execute(KMeans self, unsigned int k, IMP::kmeans::KM_ALG_TYPE alg_type, int stages=100)
388 execute(KMeans self, unsigned int k, IMP::kmeans::KM_ALG_TYPE alg_type)
389 execute(KMeans self, unsigned int k)
391 return _IMP_kmeans.KMeans_execute(self, *args)
394 def add_data_pt(self, p):
395 """add_data_pt(KMeans self, IMP::Floats const & p)"""
396 return _IMP_kmeans.KMeans_add_data_pt(self, p)
399 def clear_data(self):
400 """clear_data(KMeans self)"""
401 return _IMP_kmeans.KMeans_clear_data(self)
404 def get_data_point(self, i):
405 """get_data_point(KMeans self, unsigned int i) -> IMP::Floats const &"""
406 return _IMP_kmeans.KMeans_get_data_point(self, i)
409 def get_number_of_data_points(self):
410 """get_number_of_data_points(KMeans self) -> unsigned int"""
411 return _IMP_kmeans.KMeans_get_number_of_data_points(self)
414 def print_centers(self, *args):
416 print_centers(KMeans self, IMP::LogLevel ll)
417 print_centers(KMeans self)
419 return _IMP_kmeans.KMeans_print_centers(self, *args)
422 def get_center(self, i):
423 """get_center(KMeans self, unsigned int i) -> IMP::Floats"""
424 return _IMP_kmeans.KMeans_get_center(self, i)
427 def get_assignments(self):
428 """get_assignments(KMeans self) -> IMP::Ints"""
429 return _IMP_kmeans.KMeans_get_assignments(self)
432 def get_squared_distance_to_centers(self):
433 """get_squared_distance_to_centers(KMeans self) -> IMP::Floats"""
434 return _IMP_kmeans.KMeans_get_squared_distance_to_centers(self)
437 def get_number_of_centers(self):
438 """get_number_of_centers(KMeans self) -> unsigned int"""
439 return _IMP_kmeans.KMeans_get_number_of_centers(self)
443 """__str__(KMeans self) -> std::string"""
444 return _IMP_kmeans.KMeans___str__(self)
448 """__repr__(KMeans self) -> std::string"""
449 return _IMP_kmeans.KMeans___repr__(self)
454 return _object_cast_to_KMeans(o)
456 KMeans_swigregister = _IMP_kmeans.KMeans_swigregister
457 KMeans_swigregister(KMeans)
460 def get_module_version():
461 """get_module_version() -> std::string const"""
462 return _IMP_kmeans.get_module_version()
465 """get_example_path(std::string fname) -> std::string"""
466 return _IMP_kmeans.get_example_path(fname)
469 """get_data_path(std::string fname) -> std::string"""
470 return _IMP_kmeans.get_data_path(fname)
472 from .
import _version_check
473 _version_check.check_version(get_module_version())
474 __version__ = get_module_version()
Common base class for heavy weight IMP objects.
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.