IMP Reference Guide
2.6.1
The Integrative Modeling Platform
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Agglomerative clustering algorithm. More...
#include "IMP/em2d/em2d_config.h"
#include "IMP/em2d/scores2D.h"
#include "IMP/base_types.h"
#include <IMP/log.h>
#include <vector>
#include <list>
#include <algorithm>
#include <limits>
#include <functional>
Go to the source code of this file.
Classes | |
class | IMP::em2d::AverageDistanceLinkage |
Functor for hierarchical clustering based on average-linkage. More... | |
class | IMP::em2d::ClusterSet |
A class to store the clusters generated during hierarchical clustering. More... | |
class | IMP::em2d::CompleteLinkage |
Functor for hierarchical clustering based on complete linkage. More... | |
class | IMP::em2d::SingleLinkage |
Functor for hierarchical clustering based on single linkage. More... | |
Namespaces | |
IMP | |
Base functionality and abstract base classes for representation, scoring and sampling. | |
IMP::em2d | |
Restraints using electron microscopy 2D images (class averages). | |
Typedefs | |
typedef IMP::Vector < AverageDistanceLinkage > | IMP::em2d::AverageDistanceLinkages |
typedef IMP::Vector< ClusterSet > | IMP::em2d::ClusterSets |
typedef IMP::Vector < CompleteLinkage > | IMP::em2d::CompleteLinkages |
typedef std::list < pair_cluster_id_distance > | IMP::em2d::list_cluster_id_distance |
typedef std::pair< unsigned int, double > | IMP::em2d::pair_cluster_id_distance |
typedef IMP::Vector < SingleLinkage > | IMP::em2d::SingleLinkages |
typedef FloatsList | IMP::em2d::VectorOfFloats |
typedef IntsList | IMP::em2d::VectorOfInts |
Functions | |
template<class LinkageFunction > | |
ClusterSet | IMP::em2d::do_hierarchical_agglomerative_clustering (const FloatsList &distances) |
Function to perform agglomerative clustering. More... | |
template<class T > | |
void | IMP::em2d::print_vector (const std::vector< T > &v) |
Agglomerative clustering algorithm.
Copyright 2007-2016 IMP Inventors. All rights reserved.
Definition in file hierarchical_clustering.h.