10 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
16 if version_info >= (2, 6, 0):
17 def swig_import_helper():
18 from os.path
import dirname
22 fp, pathname, description = imp.find_module(
'_IMP_gsl', [dirname(__file__)])
28 _mod = imp.load_module(
'_IMP_gsl', fp, pathname, description)
32 _IMP_gsl = swig_import_helper()
33 del swig_import_helper
38 _swig_property = property
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44 if (name ==
"thisown"):
45 return self.this.own(value)
47 if type(value).__name__ ==
'SwigPyObject':
48 self.__dict__[name] = value
50 method = class_type.__swig_setmethods__.get(name,
None)
52 return method(self, value)
54 object.__setattr__(self, name, value)
56 raise AttributeError(
"You cannot add attributes to %s" % self)
59 def _swig_setattr(self, class_type, name, value):
60 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64 if (name ==
"thisown"):
65 return self.this.own()
66 method = class_type.__swig_getmethods__.get(name,
None)
70 return object.__getattr__(self, name)
72 raise AttributeError(name)
74 def _swig_getattr(self, class_type, name):
75 return _swig_getattr_nondynamic(self, class_type, name, 0)
80 strthis =
"proxy of " + self.this.__repr__()
83 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
88 except AttributeError:
95 def _swig_setattr_nondynamic_method(set):
96 def set_attr(self, name, value):
97 if (name ==
"thisown"):
98 return self.this.own(value)
99 if hasattr(self, name)
or (name ==
"this"):
100 set(self, name, value)
102 raise AttributeError(
"You cannot add attributes to %s" % self)
108 weakref_proxy = weakref.proxy
110 weakref_proxy =
lambda x: x
113 class IMP_GSL_SwigPyIterator(object):
114 """Proxy of C++ swig::IMP_GSL_SwigPyIterator class"""
115 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
117 def __init__(self, *args, **kwargs):
118 raise AttributeError(
"No constructor defined - class is abstract")
119 __repr__ = _swig_repr
120 __swig_destroy__ = _IMP_gsl.delete_IMP_GSL_SwigPyIterator
121 __del__ =
lambda self:
None
124 """value(IMP_GSL_SwigPyIterator self) -> PyObject *"""
125 return _IMP_gsl.IMP_GSL_SwigPyIterator_value(self)
130 incr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
131 incr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
133 return _IMP_gsl.IMP_GSL_SwigPyIterator_incr(self, n)
138 decr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
139 decr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
141 return _IMP_gsl.IMP_GSL_SwigPyIterator_decr(self, n)
144 def distance(self, x):
145 """distance(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t"""
146 return _IMP_gsl.IMP_GSL_SwigPyIterator_distance(self, x)
150 """equal(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
151 return _IMP_gsl.IMP_GSL_SwigPyIterator_equal(self, x)
155 """copy(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator"""
156 return _IMP_gsl.IMP_GSL_SwigPyIterator_copy(self)
160 """next(IMP_GSL_SwigPyIterator self) -> PyObject *"""
161 return _IMP_gsl.IMP_GSL_SwigPyIterator_next(self)
165 """__next__(IMP_GSL_SwigPyIterator self) -> PyObject *"""
166 return _IMP_gsl.IMP_GSL_SwigPyIterator___next__(self)
170 """previous(IMP_GSL_SwigPyIterator self) -> PyObject *"""
171 return _IMP_gsl.IMP_GSL_SwigPyIterator_previous(self)
174 def advance(self, n):
175 """advance(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
176 return _IMP_gsl.IMP_GSL_SwigPyIterator_advance(self, n)
180 """__eq__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
181 return _IMP_gsl.IMP_GSL_SwigPyIterator___eq__(self, x)
185 """__ne__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
186 return _IMP_gsl.IMP_GSL_SwigPyIterator___ne__(self, x)
189 def __iadd__(self, n):
190 """__iadd__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
191 return _IMP_gsl.IMP_GSL_SwigPyIterator___iadd__(self, n)
194 def __isub__(self, n):
195 """__isub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
196 return _IMP_gsl.IMP_GSL_SwigPyIterator___isub__(self, n)
199 def __add__(self, n):
200 """__add__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
201 return _IMP_gsl.IMP_GSL_SwigPyIterator___add__(self, n)
204 def __sub__(self, *args):
206 __sub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator
207 __sub__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t
209 return _IMP_gsl.IMP_GSL_SwigPyIterator___sub__(self, *args)
213 IMP_GSL_SwigPyIterator_swigregister = _IMP_gsl.IMP_GSL_SwigPyIterator_swigregister
214 IMP_GSL_SwigPyIterator_swigregister(IMP_GSL_SwigPyIterator)
223 _IMP_gsl.IMP_DEBUG_swigconstant(_IMP_gsl)
224 IMP_DEBUG = _IMP_gsl.IMP_DEBUG
226 _IMP_gsl.IMP_RELEASE_swigconstant(_IMP_gsl)
227 IMP_RELEASE = _IMP_gsl.IMP_RELEASE
229 _IMP_gsl.IMP_SILENT_swigconstant(_IMP_gsl)
230 IMP_SILENT = _IMP_gsl.IMP_SILENT
232 _IMP_gsl.IMP_PROGRESS_swigconstant(_IMP_gsl)
233 IMP_PROGRESS = _IMP_gsl.IMP_PROGRESS
235 _IMP_gsl.IMP_TERSE_swigconstant(_IMP_gsl)
236 IMP_TERSE = _IMP_gsl.IMP_TERSE
238 _IMP_gsl.IMP_VERBOSE_swigconstant(_IMP_gsl)
239 IMP_VERBOSE = _IMP_gsl.IMP_VERBOSE
241 _IMP_gsl.IMP_MEMORY_swigconstant(_IMP_gsl)
242 IMP_MEMORY = _IMP_gsl.IMP_MEMORY
244 _IMP_gsl.IMP_NONE_swigconstant(_IMP_gsl)
245 IMP_NONE = _IMP_gsl.IMP_NONE
247 _IMP_gsl.IMP_USAGE_swigconstant(_IMP_gsl)
248 IMP_USAGE = _IMP_gsl.IMP_USAGE
250 _IMP_gsl.IMP_INTERNAL_swigconstant(_IMP_gsl)
251 IMP_INTERNAL = _IMP_gsl.IMP_INTERNAL
253 _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_gsl)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX
256 _IMP_gsl.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_gsl)
257 IMP_COMPILER_HAS_AUTO = _IMP_gsl.IMP_COMPILER_HAS_AUTO
259 _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_gsl)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR
262 _IMP_gsl.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_gsl)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_gsl.IMP_COMPILER_HAS_UNIQUE_PTR
265 _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM
268 _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_gsl)
269 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS
271 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_gsl)
272 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
274 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_gsl)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
277 _IMP_gsl.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
278 IMPKERNEL_SHOW_WARNINGS = _IMP_gsl.IMPKERNEL_SHOW_WARNINGS
281 class _DirectorObjects(object):
282 """@internal Simple class to keep references to director objects
283 to prevent premature deletion."""
286 def register(self, obj):
287 """Take a reference to a director object; will only work for
288 refcounted C++ classes"""
289 if hasattr(obj,
'get_ref_count'):
290 self._objects.append(obj)
292 """Only drop our reference and allow cleanup by Python if no other
293 Python references exist (we hold 3 references: one in self._objects,
294 one in x, and one in the argument list for getrefcount) *and* no
295 other C++ references exist (the Python object always holds one)"""
296 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
297 or x.get_ref_count() > 1]
301 def get_object_count(self):
302 """Get number of director objects (useful for testing only)"""
303 return len(self._objects)
304 _director_objects = _DirectorObjects()
306 class _ostream(object):
307 """Proxy of C++ std::ostream class"""
308 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
310 def __init__(self, *args, **kwargs):
311 raise AttributeError(
"No constructor defined")
312 __repr__ = _swig_repr
314 def write(self, osa_buf):
315 """write(_ostream self, char const * osa_buf)"""
316 return _IMP_gsl._ostream_write(self, osa_buf)
318 _ostream_swigregister = _IMP_gsl._ostream_swigregister
319 _ostream_swigregister(_ostream)
322 _IMP_gsl.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_gsl)
323 IMP_COMPILER_HAS_OVERRIDE = _IMP_gsl.IMP_COMPILER_HAS_OVERRIDE
325 _IMP_gsl.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_gsl)
326 IMP_COMPILER_HAS_FINAL = _IMP_gsl.IMP_COMPILER_HAS_FINAL
328 _IMP_gsl.IMP_HAS_NOEXCEPT_swigconstant(_IMP_gsl)
329 IMP_HAS_NOEXCEPT = _IMP_gsl.IMP_HAS_NOEXCEPT
332 _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
333 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM
335 _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
336 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
338 _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
339 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM
341 _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
342 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM
344 _IMP_gsl.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
345 IMPCGAL_SHOW_WARNINGS = _IMP_gsl.IMPCGAL_SHOW_WARNINGS
348 _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
349 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL
351 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
352 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
354 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
355 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
357 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
358 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM
360 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
361 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM
363 _IMP_gsl.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_gsl)
364 IMP_ALGEBRA_HAS_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_CGAL
366 _IMP_gsl.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_gsl)
367 IMP_ALGEBRA_HAS_ANN = _IMP_gsl.IMP_ALGEBRA_HAS_ANN
369 _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_gsl)
370 IMPALGEBRA_SHOW_WARNINGS = _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS
373 _IMP_gsl.IMP_GSL_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
374 IMP_GSL_HAS_IMP_CGAL = _IMP_gsl.IMP_GSL_HAS_IMP_CGAL
376 _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
377 IMP_GSL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM
379 _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
380 IMP_GSL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS
382 _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
383 IMP_GSL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM
385 _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
386 IMP_GSL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM
388 _IMP_gsl.IMP_GSL_HAS_CGAL_swigconstant(_IMP_gsl)
389 IMP_GSL_HAS_CGAL = _IMP_gsl.IMP_GSL_HAS_CGAL
391 _IMP_gsl.IMPGSL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
392 IMPGSL_SHOW_WARNINGS = _IMP_gsl.IMPGSL_SHOW_WARNINGS
394 _object_types.append(
"GSLOptimizer")
397 def _object_cast_to_GSLOptimizer(o):
398 """_object_cast_to_GSLOptimizer(Object o) -> GSLOptimizer"""
399 return _IMP_gsl._object_cast_to_GSLOptimizer(o)
401 _object_types.append(
"ConjugateGradients")
404 def _object_cast_to_ConjugateGradients(o):
405 """_object_cast_to_ConjugateGradients(Object o) -> ConjugateGradients"""
406 return _IMP_gsl._object_cast_to_ConjugateGradients(o)
408 _object_types.append(
"QuasiNewton")
411 def _object_cast_to_QuasiNewton(o):
412 """_object_cast_to_QuasiNewton(Object o) -> QuasiNewton"""
413 return _IMP_gsl._object_cast_to_QuasiNewton(o)
415 _object_types.append(
"Simplex")
418 def _object_cast_to_Simplex(o):
419 """_object_cast_to_Simplex(Object o) -> Simplex"""
420 return _IMP_gsl._object_cast_to_Simplex(o)
422 """Proxy of C++ IMP::gsl::GSLOptimizer class"""
423 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
425 def __init__(self, m):
426 """__init__(IMP::gsl::GSLOptimizer self, Model m) -> GSLOptimizer"""
427 if self.__class__ == GSLOptimizer:
431 this = _IMP_gsl.new_GSLOptimizer(_self, m)
433 self.this.append(this)
437 if self.__class__ != GSLOptimizer:
438 _director_objects.register(self)
442 __swig_destroy__ = _IMP_gsl.delete_GSLOptimizer
443 __del__ =
lambda self:
None
445 def set_stop_score(self, d):
446 """set_stop_score(GSLOptimizer self, double d)"""
447 return _IMP_gsl.GSLOptimizer_set_stop_score(self, d)
451 """__str__(GSLOptimizer self) -> std::string"""
452 return _IMP_gsl.GSLOptimizer___str__(self)
456 """__repr__(GSLOptimizer self) -> std::string"""
457 return _IMP_gsl.GSLOptimizer___repr__(self)
462 return _object_cast_to_GSLOptimizer(o)
465 def get_type_name(self):
466 return self.__class__.__name__
467 def do_show(self, out):
470 if"IMP::gsl" ==
"IMP":
471 return VersionInfo(self.__module__,
472 __import__(self.__module__).get_module_version())
475 __import__(self.__module__).get_module_version())
478 return _object_cast_to_GSLOptimizer(o)
480 def __disown__(self):
482 _IMP_gsl.disown_GSLOptimizer(self)
483 return weakref_proxy(self)
486 """do_destroy(GSLOptimizer self)"""
487 return _IMP_gsl.GSLOptimizer_do_destroy(self)
490 def handle_set_has_required_score_states(self, arg0):
491 """handle_set_has_required_score_states(GSLOptimizer self, bool arg0)"""
492 return _IMP_gsl.GSLOptimizer_handle_set_has_required_score_states(self, arg0)
496 """do_get_inputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
497 return _IMP_gsl.GSLOptimizer_do_get_inputs(self)
501 """do_get_outputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
502 return _IMP_gsl.GSLOptimizer_do_get_outputs(self)
505 def do_get_interactions(self):
506 """do_get_interactions(GSLOptimizer self) -> IMP::ModelObjectsTemps"""
507 return _IMP_gsl.GSLOptimizer_do_get_interactions(self)
510 def do_optimize(self, ns):
511 """do_optimize(GSLOptimizer self, unsigned int ns) -> double"""
512 return _IMP_gsl.GSLOptimizer_do_optimize(self, ns)
514 GSLOptimizer_swigregister = _IMP_gsl.GSLOptimizer_swigregister
515 GSLOptimizer_swigregister(GSLOptimizer)
517 class ConjugateGradients(GSLOptimizer):
518 """Proxy of C++ IMP::gsl::ConjugateGradients class"""
519 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
521 def __init__(self, m):
522 """__init__(IMP::gsl::ConjugateGradients self, Model m) -> ConjugateGradients"""
523 this = _IMP_gsl.new_ConjugateGradients(m)
525 self.this.append(this)
529 def set_threshold(self, mg):
530 """set_threshold(ConjugateGradients self, double mg)"""
531 return _IMP_gsl.ConjugateGradients_set_threshold(self, mg)
534 def do_optimize(self, max_steps):
535 """do_optimize(ConjugateGradients self, unsigned int max_steps) -> IMP::Float"""
536 return _IMP_gsl.ConjugateGradients_do_optimize(self, max_steps)
540 """get_version_info(ConjugateGradients self) -> VersionInfo"""
541 return _IMP_gsl.ConjugateGradients_get_version_info(self)
545 """__str__(ConjugateGradients self) -> std::string"""
546 return _IMP_gsl.ConjugateGradients___str__(self)
550 """__repr__(ConjugateGradients self) -> std::string"""
551 return _IMP_gsl.ConjugateGradients___repr__(self)
556 return _object_cast_to_ConjugateGradients(o)
558 ConjugateGradients_swigregister = _IMP_gsl.ConjugateGradients_swigregister
559 ConjugateGradients_swigregister(ConjugateGradients)
561 class QuasiNewton(GSLOptimizer):
562 """Proxy of C++ IMP::gsl::QuasiNewton class"""
563 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
565 def __init__(self, m):
566 """__init__(IMP::gsl::QuasiNewton self, Model m) -> QuasiNewton"""
567 this = _IMP_gsl.new_QuasiNewton(m)
569 self.this.append(this)
573 def set_initial_step(self, length):
574 """set_initial_step(QuasiNewton self, double length)"""
575 return _IMP_gsl.QuasiNewton_set_initial_step(self, length)
578 def set_line_step(self, d):
579 """set_line_step(QuasiNewton self, double d)"""
580 return _IMP_gsl.QuasiNewton_set_line_step(self, d)
583 def set_minimum_gradient(self, d):
584 """set_minimum_gradient(QuasiNewton self, double d)"""
585 return _IMP_gsl.QuasiNewton_set_minimum_gradient(self, d)
588 def do_optimize(self, max_steps):
589 """do_optimize(QuasiNewton self, unsigned int max_steps) -> IMP::Float"""
590 return _IMP_gsl.QuasiNewton_do_optimize(self, max_steps)
594 """get_version_info(QuasiNewton self) -> VersionInfo"""
595 return _IMP_gsl.QuasiNewton_get_version_info(self)
599 """__str__(QuasiNewton self) -> std::string"""
600 return _IMP_gsl.QuasiNewton___str__(self)
604 """__repr__(QuasiNewton self) -> std::string"""
605 return _IMP_gsl.QuasiNewton___repr__(self)
610 return _object_cast_to_QuasiNewton(o)
612 QuasiNewton_swigregister = _IMP_gsl.QuasiNewton_swigregister
613 QuasiNewton_swigregister(QuasiNewton)
615 class Simplex(GSLOptimizer):
616 """Proxy of C++ IMP::gsl::Simplex class"""
617 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
619 def __init__(self, m):
620 """__init__(IMP::gsl::Simplex self, Model m) -> Simplex"""
621 this = _IMP_gsl.new_Simplex(m)
623 self.this.append(this)
627 def set_initial_length(self, length):
628 """set_initial_length(Simplex self, double length)"""
629 return _IMP_gsl.Simplex_set_initial_length(self, length)
632 def set_minimum_size(self, d):
633 """set_minimum_size(Simplex self, double d)"""
634 return _IMP_gsl.Simplex_set_minimum_size(self, d)
637 def do_optimize(self, max_steps):
638 """do_optimize(Simplex self, unsigned int max_steps) -> IMP::Float"""
639 return _IMP_gsl.Simplex_do_optimize(self, max_steps)
643 """get_version_info(Simplex self) -> VersionInfo"""
644 return _IMP_gsl.Simplex_get_version_info(self)
648 """__str__(Simplex self) -> std::string"""
649 return _IMP_gsl.Simplex___str__(self)
653 """__repr__(Simplex self) -> std::string"""
654 return _IMP_gsl.Simplex___repr__(self)
659 return _object_cast_to_Simplex(o)
661 Simplex_swigregister = _IMP_gsl.Simplex_swigregister
662 Simplex_swigregister(Simplex)
665 def get_module_version():
666 """get_module_version() -> std::string const"""
667 return _IMP_gsl.get_module_version()
670 """get_example_path(std::string fname) -> std::string"""
671 return _IMP_gsl.get_example_path(fname)
674 """get_data_path(std::string fname) -> std::string"""
675 return _IMP_gsl.get_data_path(fname)
677 from .
import _version_check
678 _version_check.check_version(get_module_version())
679 __version__ = get_module_version()
Make CGAL functionality available to IMP.
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
virtual void do_destroy()
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Version and module information for Objects.
Base class for optimizers that act on individual attributes.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.