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IMP Reference Guide  2.6.1
The Integrative Modeling Platform
gsl/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2016 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_gsl', [dirname(__file__)])
23  except ImportError:
24  import _IMP_gsl
25  return _IMP_gsl
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_gsl', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_gsl = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_gsl
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_GSL_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_GSL_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_gsl.delete_IMP_GSL_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_GSL_SwigPyIterator self) -> PyObject *"""
125  return _IMP_gsl.IMP_GSL_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
131  incr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
132  """
133  return _IMP_gsl.IMP_GSL_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
139  decr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
140  """
141  return _IMP_gsl.IMP_GSL_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_gsl.IMP_GSL_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
151  return _IMP_gsl.IMP_GSL_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator"""
156  return _IMP_gsl.IMP_GSL_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_GSL_SwigPyIterator self) -> PyObject *"""
161  return _IMP_gsl.IMP_GSL_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_GSL_SwigPyIterator self) -> PyObject *"""
166  return _IMP_gsl.IMP_GSL_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_GSL_SwigPyIterator self) -> PyObject *"""
171  return _IMP_gsl.IMP_GSL_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
176  return _IMP_gsl.IMP_GSL_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
181  return _IMP_gsl.IMP_GSL_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
186  return _IMP_gsl.IMP_GSL_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
191  return _IMP_gsl.IMP_GSL_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
196  return _IMP_gsl.IMP_GSL_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
201  return _IMP_gsl.IMP_GSL_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator
207  __sub__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_gsl.IMP_GSL_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_GSL_SwigPyIterator_swigregister = _IMP_gsl.IMP_GSL_SwigPyIterator_swigregister
214 IMP_GSL_SwigPyIterator_swigregister(IMP_GSL_SwigPyIterator)
215 
216 
217 _value_types=[]
218 _object_types=[]
219 _raii_types=[]
220 _plural_types=[]
221 
222 
223 _IMP_gsl.IMP_DEBUG_swigconstant(_IMP_gsl)
224 IMP_DEBUG = _IMP_gsl.IMP_DEBUG
225 
226 _IMP_gsl.IMP_RELEASE_swigconstant(_IMP_gsl)
227 IMP_RELEASE = _IMP_gsl.IMP_RELEASE
228 
229 _IMP_gsl.IMP_SILENT_swigconstant(_IMP_gsl)
230 IMP_SILENT = _IMP_gsl.IMP_SILENT
231 
232 _IMP_gsl.IMP_PROGRESS_swigconstant(_IMP_gsl)
233 IMP_PROGRESS = _IMP_gsl.IMP_PROGRESS
234 
235 _IMP_gsl.IMP_TERSE_swigconstant(_IMP_gsl)
236 IMP_TERSE = _IMP_gsl.IMP_TERSE
237 
238 _IMP_gsl.IMP_VERBOSE_swigconstant(_IMP_gsl)
239 IMP_VERBOSE = _IMP_gsl.IMP_VERBOSE
240 
241 _IMP_gsl.IMP_MEMORY_swigconstant(_IMP_gsl)
242 IMP_MEMORY = _IMP_gsl.IMP_MEMORY
243 
244 _IMP_gsl.IMP_NONE_swigconstant(_IMP_gsl)
245 IMP_NONE = _IMP_gsl.IMP_NONE
246 
247 _IMP_gsl.IMP_USAGE_swigconstant(_IMP_gsl)
248 IMP_USAGE = _IMP_gsl.IMP_USAGE
249 
250 _IMP_gsl.IMP_INTERNAL_swigconstant(_IMP_gsl)
251 IMP_INTERNAL = _IMP_gsl.IMP_INTERNAL
252 
253 _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_gsl)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX
255 
256 _IMP_gsl.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_gsl)
257 IMP_COMPILER_HAS_AUTO = _IMP_gsl.IMP_COMPILER_HAS_AUTO
258 
259 _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_gsl)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR
261 
262 _IMP_gsl.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_gsl)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_gsl.IMP_COMPILER_HAS_UNIQUE_PTR
264 
265 _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM
267 
268 _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_gsl)
269 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS
270 
271 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_gsl)
272 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
273 
274 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_gsl)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
276 
277 _IMP_gsl.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
278 IMPKERNEL_SHOW_WARNINGS = _IMP_gsl.IMPKERNEL_SHOW_WARNINGS
279 
280 import sys
281 class _DirectorObjects(object):
282  """@internal Simple class to keep references to director objects
283  to prevent premature deletion."""
284  def __init__(self):
285  self._objects = []
286  def register(self, obj):
287  """Take a reference to a director object; will only work for
288  refcounted C++ classes"""
289  if hasattr(obj, 'get_ref_count'):
290  self._objects.append(obj)
291  def cleanup(self):
292  """Only drop our reference and allow cleanup by Python if no other
293  Python references exist (we hold 3 references: one in self._objects,
294  one in x, and one in the argument list for getrefcount) *and* no
295  other C++ references exist (the Python object always holds one)"""
296  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
297  or x.get_ref_count() > 1]
298 # Do in two steps so the references are kept until the end of the
299 # function (deleting references may trigger a fresh call to this method)
300  self._objects = objs
301  def get_object_count(self):
302  """Get number of director objects (useful for testing only)"""
303  return len(self._objects)
304 _director_objects = _DirectorObjects()
305 
306 class _ostream(object):
307  """Proxy of C++ std::ostream class"""
308  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
309 
310  def __init__(self, *args, **kwargs):
311  raise AttributeError("No constructor defined")
312  __repr__ = _swig_repr
313 
314  def write(self, osa_buf):
315  """write(_ostream self, char const * osa_buf)"""
316  return _IMP_gsl._ostream_write(self, osa_buf)
317 
318 _ostream_swigregister = _IMP_gsl._ostream_swigregister
319 _ostream_swigregister(_ostream)
320 
321 
322 _IMP_gsl.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_gsl)
323 IMP_COMPILER_HAS_OVERRIDE = _IMP_gsl.IMP_COMPILER_HAS_OVERRIDE
324 
325 _IMP_gsl.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_gsl)
326 IMP_COMPILER_HAS_FINAL = _IMP_gsl.IMP_COMPILER_HAS_FINAL
327 
328 _IMP_gsl.IMP_HAS_NOEXCEPT_swigconstant(_IMP_gsl)
329 IMP_HAS_NOEXCEPT = _IMP_gsl.IMP_HAS_NOEXCEPT
330 import IMP
331 
332 _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
333 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM
334 
335 _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
336 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
337 
338 _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
339 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM
340 
341 _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
342 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM
343 
344 _IMP_gsl.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
345 IMPCGAL_SHOW_WARNINGS = _IMP_gsl.IMPCGAL_SHOW_WARNINGS
346 import IMP.cgal
347 
348 _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
349 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL
350 
351 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
352 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
353 
354 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
355 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
356 
357 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
358 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM
359 
360 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
361 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM
362 
363 _IMP_gsl.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_gsl)
364 IMP_ALGEBRA_HAS_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_CGAL
365 
366 _IMP_gsl.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_gsl)
367 IMP_ALGEBRA_HAS_ANN = _IMP_gsl.IMP_ALGEBRA_HAS_ANN
368 
369 _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_gsl)
370 IMPALGEBRA_SHOW_WARNINGS = _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS
371 import IMP.algebra
372 
373 _IMP_gsl.IMP_GSL_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
374 IMP_GSL_HAS_IMP_CGAL = _IMP_gsl.IMP_GSL_HAS_IMP_CGAL
375 
376 _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
377 IMP_GSL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM
378 
379 _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
380 IMP_GSL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS
381 
382 _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
383 IMP_GSL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM
384 
385 _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
386 IMP_GSL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM
387 
388 _IMP_gsl.IMP_GSL_HAS_CGAL_swigconstant(_IMP_gsl)
389 IMP_GSL_HAS_CGAL = _IMP_gsl.IMP_GSL_HAS_CGAL
390 
391 _IMP_gsl.IMPGSL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
392 IMPGSL_SHOW_WARNINGS = _IMP_gsl.IMPGSL_SHOW_WARNINGS
393 
394 _object_types.append("GSLOptimizer")
395 
396 
397 def _object_cast_to_GSLOptimizer(o):
398  """_object_cast_to_GSLOptimizer(Object o) -> GSLOptimizer"""
399  return _IMP_gsl._object_cast_to_GSLOptimizer(o)
400 
401 _object_types.append("ConjugateGradients")
402 
403 
404 def _object_cast_to_ConjugateGradients(o):
405  """_object_cast_to_ConjugateGradients(Object o) -> ConjugateGradients"""
406  return _IMP_gsl._object_cast_to_ConjugateGradients(o)
407 
408 _object_types.append("QuasiNewton")
409 
410 
411 def _object_cast_to_QuasiNewton(o):
412  """_object_cast_to_QuasiNewton(Object o) -> QuasiNewton"""
413  return _IMP_gsl._object_cast_to_QuasiNewton(o)
414 
415 _object_types.append("Simplex")
416 
417 
418 def _object_cast_to_Simplex(o):
419  """_object_cast_to_Simplex(Object o) -> Simplex"""
420  return _IMP_gsl._object_cast_to_Simplex(o)
421 class GSLOptimizer(IMP.AttributeOptimizer):
422  """Proxy of C++ IMP::gsl::GSLOptimizer class"""
423  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
424 
425  def __init__(self, m):
426  """__init__(IMP::gsl::GSLOptimizer self, Model m) -> GSLOptimizer"""
427  if self.__class__ == GSLOptimizer:
428  _self = None
429  else:
430  _self = self
431  this = _IMP_gsl.new_GSLOptimizer(_self, m)
432  try:
433  self.this.append(this)
434  except:
435  self.this = this
436 
437  if self.__class__ != GSLOptimizer:
438  _director_objects.register(self)
439 
440 
441 
442  __swig_destroy__ = _IMP_gsl.delete_GSLOptimizer
443  __del__ = lambda self: None
444 
445  def set_stop_score(self, d):
446  """set_stop_score(GSLOptimizer self, double d)"""
447  return _IMP_gsl.GSLOptimizer_set_stop_score(self, d)
448 
449 
450  def __str__(self):
451  """__str__(GSLOptimizer self) -> std::string"""
452  return _IMP_gsl.GSLOptimizer___str__(self)
453 
454 
455  def __repr__(self):
456  """__repr__(GSLOptimizer self) -> std::string"""
457  return _IMP_gsl.GSLOptimizer___repr__(self)
458 
459 
460  @staticmethod
461  def get_from(o):
462  return _object_cast_to_GSLOptimizer(o)
463 
464 
465  def get_type_name(self):
466  return self.__class__.__name__
467  def do_show(self, out):
468  pass
469  def get_version_info(self):
470  if"IMP::gsl" == "IMP":
471  return VersionInfo(self.__module__,
472  __import__(self.__module__).get_module_version())
473  else:
474  return IMP.VersionInfo(self.__module__,
475  __import__(self.__module__).get_module_version())
476  @staticmethod
477  def get_from(o):
478  return _object_cast_to_GSLOptimizer(o)
479 
480  def __disown__(self):
481  self.this.disown()
482  _IMP_gsl.disown_GSLOptimizer(self)
483  return weakref_proxy(self)
484 
485  def do_destroy(self):
486  """do_destroy(GSLOptimizer self)"""
487  return _IMP_gsl.GSLOptimizer_do_destroy(self)
488 
489 
490  def handle_set_has_required_score_states(self, arg0):
491  """handle_set_has_required_score_states(GSLOptimizer self, bool arg0)"""
492  return _IMP_gsl.GSLOptimizer_handle_set_has_required_score_states(self, arg0)
493 
494 
495  def do_get_inputs(self):
496  """do_get_inputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
497  return _IMP_gsl.GSLOptimizer_do_get_inputs(self)
498 
499 
500  def do_get_outputs(self):
501  """do_get_outputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
502  return _IMP_gsl.GSLOptimizer_do_get_outputs(self)
503 
504 
505  def do_get_interactions(self):
506  """do_get_interactions(GSLOptimizer self) -> IMP::ModelObjectsTemps"""
507  return _IMP_gsl.GSLOptimizer_do_get_interactions(self)
508 
509 
510  def do_optimize(self, ns):
511  """do_optimize(GSLOptimizer self, unsigned int ns) -> double"""
512  return _IMP_gsl.GSLOptimizer_do_optimize(self, ns)
513 
514 GSLOptimizer_swigregister = _IMP_gsl.GSLOptimizer_swigregister
515 GSLOptimizer_swigregister(GSLOptimizer)
516 
517 class ConjugateGradients(GSLOptimizer):
518  """Proxy of C++ IMP::gsl::ConjugateGradients class"""
519  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
520 
521  def __init__(self, m):
522  """__init__(IMP::gsl::ConjugateGradients self, Model m) -> ConjugateGradients"""
523  this = _IMP_gsl.new_ConjugateGradients(m)
524  try:
525  self.this.append(this)
526  except:
527  self.this = this
528 
529  def set_threshold(self, mg):
530  """set_threshold(ConjugateGradients self, double mg)"""
531  return _IMP_gsl.ConjugateGradients_set_threshold(self, mg)
532 
533 
534  def do_optimize(self, max_steps):
535  """do_optimize(ConjugateGradients self, unsigned int max_steps) -> IMP::Float"""
536  return _IMP_gsl.ConjugateGradients_do_optimize(self, max_steps)
537 
538 
539  def get_version_info(self):
540  """get_version_info(ConjugateGradients self) -> VersionInfo"""
541  return _IMP_gsl.ConjugateGradients_get_version_info(self)
542 
543 
544  def __str__(self):
545  """__str__(ConjugateGradients self) -> std::string"""
546  return _IMP_gsl.ConjugateGradients___str__(self)
547 
548 
549  def __repr__(self):
550  """__repr__(ConjugateGradients self) -> std::string"""
551  return _IMP_gsl.ConjugateGradients___repr__(self)
552 
553 
554  @staticmethod
555  def get_from(o):
556  return _object_cast_to_ConjugateGradients(o)
557 
558 ConjugateGradients_swigregister = _IMP_gsl.ConjugateGradients_swigregister
559 ConjugateGradients_swigregister(ConjugateGradients)
560 
561 class QuasiNewton(GSLOptimizer):
562  """Proxy of C++ IMP::gsl::QuasiNewton class"""
563  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
564 
565  def __init__(self, m):
566  """__init__(IMP::gsl::QuasiNewton self, Model m) -> QuasiNewton"""
567  this = _IMP_gsl.new_QuasiNewton(m)
568  try:
569  self.this.append(this)
570  except:
571  self.this = this
572 
573  def set_initial_step(self, length):
574  """set_initial_step(QuasiNewton self, double length)"""
575  return _IMP_gsl.QuasiNewton_set_initial_step(self, length)
576 
577 
578  def set_line_step(self, d):
579  """set_line_step(QuasiNewton self, double d)"""
580  return _IMP_gsl.QuasiNewton_set_line_step(self, d)
581 
582 
583  def set_minimum_gradient(self, d):
584  """set_minimum_gradient(QuasiNewton self, double d)"""
585  return _IMP_gsl.QuasiNewton_set_minimum_gradient(self, d)
586 
587 
588  def do_optimize(self, max_steps):
589  """do_optimize(QuasiNewton self, unsigned int max_steps) -> IMP::Float"""
590  return _IMP_gsl.QuasiNewton_do_optimize(self, max_steps)
591 
592 
593  def get_version_info(self):
594  """get_version_info(QuasiNewton self) -> VersionInfo"""
595  return _IMP_gsl.QuasiNewton_get_version_info(self)
596 
597 
598  def __str__(self):
599  """__str__(QuasiNewton self) -> std::string"""
600  return _IMP_gsl.QuasiNewton___str__(self)
601 
602 
603  def __repr__(self):
604  """__repr__(QuasiNewton self) -> std::string"""
605  return _IMP_gsl.QuasiNewton___repr__(self)
606 
607 
608  @staticmethod
609  def get_from(o):
610  return _object_cast_to_QuasiNewton(o)
611 
612 QuasiNewton_swigregister = _IMP_gsl.QuasiNewton_swigregister
613 QuasiNewton_swigregister(QuasiNewton)
614 
615 class Simplex(GSLOptimizer):
616  """Proxy of C++ IMP::gsl::Simplex class"""
617  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
618 
619  def __init__(self, m):
620  """__init__(IMP::gsl::Simplex self, Model m) -> Simplex"""
621  this = _IMP_gsl.new_Simplex(m)
622  try:
623  self.this.append(this)
624  except:
625  self.this = this
626 
627  def set_initial_length(self, length):
628  """set_initial_length(Simplex self, double length)"""
629  return _IMP_gsl.Simplex_set_initial_length(self, length)
630 
631 
632  def set_minimum_size(self, d):
633  """set_minimum_size(Simplex self, double d)"""
634  return _IMP_gsl.Simplex_set_minimum_size(self, d)
635 
636 
637  def do_optimize(self, max_steps):
638  """do_optimize(Simplex self, unsigned int max_steps) -> IMP::Float"""
639  return _IMP_gsl.Simplex_do_optimize(self, max_steps)
640 
641 
642  def get_version_info(self):
643  """get_version_info(Simplex self) -> VersionInfo"""
644  return _IMP_gsl.Simplex_get_version_info(self)
645 
646 
647  def __str__(self):
648  """__str__(Simplex self) -> std::string"""
649  return _IMP_gsl.Simplex___str__(self)
650 
651 
652  def __repr__(self):
653  """__repr__(Simplex self) -> std::string"""
654  return _IMP_gsl.Simplex___repr__(self)
655 
656 
657  @staticmethod
658  def get_from(o):
659  return _object_cast_to_Simplex(o)
660 
661 Simplex_swigregister = _IMP_gsl.Simplex_swigregister
662 Simplex_swigregister(Simplex)
663 
664 
665 def get_module_version():
666  """get_module_version() -> std::string const"""
667  return _IMP_gsl.get_module_version()
668 
669 def get_example_path(fname):
670  """get_example_path(std::string fname) -> std::string"""
671  return _IMP_gsl.get_example_path(fname)
672 
673 def get_data_path(fname):
674  """get_data_path(std::string fname) -> std::string"""
675  return _IMP_gsl.get_data_path(fname)
676 
677 from . import _version_check
678 _version_check.check_version(get_module_version())
679 __version__ = get_module_version()
680 
681 
682 
Make CGAL functionality available to IMP.
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
virtual void do_destroy()
Definition: Object.h:231
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Version and module information for Objects.
Definition: VersionInfo.h:28
Base class for optimizers that act on individual attributes.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
Definition: Object.h:173
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.