10 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
16 if version_info >= (2, 6, 0):
17 def swig_import_helper():
18 from os.path
import dirname
22 fp, pathname, description = imp.find_module(
'_IMP_cnmultifit', [dirname(__file__)])
24 import _IMP_cnmultifit
25 return _IMP_cnmultifit
28 _mod = imp.load_module(
'_IMP_cnmultifit', fp, pathname, description)
32 _IMP_cnmultifit = swig_import_helper()
33 del swig_import_helper
35 import _IMP_cnmultifit
38 _swig_property = property
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44 if (name ==
"thisown"):
45 return self.this.own(value)
47 if type(value).__name__ ==
'SwigPyObject':
48 self.__dict__[name] = value
50 method = class_type.__swig_setmethods__.get(name,
None)
52 return method(self, value)
54 object.__setattr__(self, name, value)
56 raise AttributeError(
"You cannot add attributes to %s" % self)
59 def _swig_setattr(self, class_type, name, value):
60 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64 if (name ==
"thisown"):
65 return self.this.own()
66 method = class_type.__swig_getmethods__.get(name,
None)
70 return object.__getattr__(self, name)
72 raise AttributeError(name)
74 def _swig_getattr(self, class_type, name):
75 return _swig_getattr_nondynamic(self, class_type, name, 0)
80 strthis =
"proxy of " + self.this.__repr__()
83 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
88 except AttributeError:
95 def _swig_setattr_nondynamic_method(set):
96 def set_attr(self, name, value):
97 if (name ==
"thisown"):
98 return self.this.own(value)
99 if hasattr(self, name)
or (name ==
"this"):
100 set(self, name, value)
102 raise AttributeError(
"You cannot add attributes to %s" % self)
108 weakref_proxy = weakref.proxy
110 weakref_proxy =
lambda x: x
113 class IMP_CNMULTIFIT_SwigPyIterator(object):
114 """Proxy of C++ swig::IMP_CNMULTIFIT_SwigPyIterator class"""
115 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
117 def __init__(self, *args, **kwargs):
118 raise AttributeError(
"No constructor defined - class is abstract")
119 __repr__ = _swig_repr
120 __swig_destroy__ = _IMP_cnmultifit.delete_IMP_CNMULTIFIT_SwigPyIterator
121 __del__ =
lambda self:
None
124 """value(IMP_CNMULTIFIT_SwigPyIterator self) -> PyObject *"""
125 return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_value(self)
130 incr(IMP_CNMULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_CNMULTIFIT_SwigPyIterator
131 incr(IMP_CNMULTIFIT_SwigPyIterator self) -> IMP_CNMULTIFIT_SwigPyIterator
133 return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_incr(self, n)
138 decr(IMP_CNMULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_CNMULTIFIT_SwigPyIterator
139 decr(IMP_CNMULTIFIT_SwigPyIterator self) -> IMP_CNMULTIFIT_SwigPyIterator
141 return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_decr(self, n)
144 def distance(self, x):
145 """distance(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> ptrdiff_t"""
146 return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_distance(self, x)
150 """equal(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> bool"""
151 return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_equal(self, x)
155 """copy(IMP_CNMULTIFIT_SwigPyIterator self) -> IMP_CNMULTIFIT_SwigPyIterator"""
156 return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_copy(self)
160 """next(IMP_CNMULTIFIT_SwigPyIterator self) -> PyObject *"""
161 return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_next(self)
165 """__next__(IMP_CNMULTIFIT_SwigPyIterator self) -> PyObject *"""
166 return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___next__(self)
170 """previous(IMP_CNMULTIFIT_SwigPyIterator self) -> PyObject *"""
171 return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_previous(self)
174 def advance(self, n):
175 """advance(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator"""
176 return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_advance(self, n)
180 """__eq__(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> bool"""
181 return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___eq__(self, x)
185 """__ne__(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> bool"""
186 return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___ne__(self, x)
189 def __iadd__(self, n):
190 """__iadd__(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator"""
191 return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___iadd__(self, n)
194 def __isub__(self, n):
195 """__isub__(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator"""
196 return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___isub__(self, n)
199 def __add__(self, n):
200 """__add__(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator"""
201 return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___add__(self, n)
204 def __sub__(self, *args):
206 __sub__(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator
207 __sub__(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> ptrdiff_t
209 return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___sub__(self, *args)
213 IMP_CNMULTIFIT_SwigPyIterator_swigregister = _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_swigregister
214 IMP_CNMULTIFIT_SwigPyIterator_swigregister(IMP_CNMULTIFIT_SwigPyIterator)
223 _IMP_cnmultifit.IMP_DEBUG_swigconstant(_IMP_cnmultifit)
224 IMP_DEBUG = _IMP_cnmultifit.IMP_DEBUG
226 _IMP_cnmultifit.IMP_RELEASE_swigconstant(_IMP_cnmultifit)
227 IMP_RELEASE = _IMP_cnmultifit.IMP_RELEASE
229 _IMP_cnmultifit.IMP_SILENT_swigconstant(_IMP_cnmultifit)
230 IMP_SILENT = _IMP_cnmultifit.IMP_SILENT
232 _IMP_cnmultifit.IMP_PROGRESS_swigconstant(_IMP_cnmultifit)
233 IMP_PROGRESS = _IMP_cnmultifit.IMP_PROGRESS
235 _IMP_cnmultifit.IMP_TERSE_swigconstant(_IMP_cnmultifit)
236 IMP_TERSE = _IMP_cnmultifit.IMP_TERSE
238 _IMP_cnmultifit.IMP_VERBOSE_swigconstant(_IMP_cnmultifit)
239 IMP_VERBOSE = _IMP_cnmultifit.IMP_VERBOSE
241 _IMP_cnmultifit.IMP_MEMORY_swigconstant(_IMP_cnmultifit)
242 IMP_MEMORY = _IMP_cnmultifit.IMP_MEMORY
244 _IMP_cnmultifit.IMP_NONE_swigconstant(_IMP_cnmultifit)
245 IMP_NONE = _IMP_cnmultifit.IMP_NONE
247 _IMP_cnmultifit.IMP_USAGE_swigconstant(_IMP_cnmultifit)
248 IMP_USAGE = _IMP_cnmultifit.IMP_USAGE
250 _IMP_cnmultifit.IMP_INTERNAL_swigconstant(_IMP_cnmultifit)
251 IMP_INTERNAL = _IMP_cnmultifit.IMP_INTERNAL
253 _IMP_cnmultifit.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_cnmultifit)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_cnmultifit.IMP_KERNEL_HAS_LOG4CXX
256 _IMP_cnmultifit.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_cnmultifit)
257 IMP_COMPILER_HAS_AUTO = _IMP_cnmultifit.IMP_COMPILER_HAS_AUTO
259 _IMP_cnmultifit.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_cnmultifit)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_cnmultifit.IMP_COMPILER_HAS_DEBUG_VECTOR
262 _IMP_cnmultifit.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_cnmultifit)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_cnmultifit.IMP_COMPILER_HAS_UNIQUE_PTR
265 _IMP_cnmultifit.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_KERNEL_HAS_BOOST_RANDOM
268 _IMP_cnmultifit.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_cnmultifit)
269 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_cnmultifit.IMP_KERNEL_HAS_GPERFTOOLS
271 _IMP_cnmultifit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_cnmultifit)
272 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_cnmultifit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
274 _IMP_cnmultifit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_cnmultifit)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_cnmultifit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
277 _IMP_cnmultifit.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
278 IMPKERNEL_SHOW_WARNINGS = _IMP_cnmultifit.IMPKERNEL_SHOW_WARNINGS
281 class _DirectorObjects(object):
282 """@internal Simple class to keep references to director objects
283 to prevent premature deletion."""
286 def register(self, obj):
287 """Take a reference to a director object; will only work for
288 refcounted C++ classes"""
289 if hasattr(obj,
'get_ref_count'):
290 self._objects.append(obj)
292 """Only drop our reference and allow cleanup by Python if no other
293 Python references exist (we hold 3 references: one in self._objects,
294 one in x, and one in the argument list for getrefcount) *and* no
295 other C++ references exist (the Python object always holds one)"""
296 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
297 or x.get_ref_count() > 1]
301 def get_object_count(self):
302 """Get number of director objects (useful for testing only)"""
303 return len(self._objects)
304 _director_objects = _DirectorObjects()
306 class _ostream(object):
307 """Proxy of C++ std::ostream class"""
308 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
310 def __init__(self, *args, **kwargs):
311 raise AttributeError(
"No constructor defined")
312 __repr__ = _swig_repr
314 def write(self, osa_buf):
315 """write(_ostream self, char const * osa_buf)"""
316 return _IMP_cnmultifit._ostream_write(self, osa_buf)
318 _ostream_swigregister = _IMP_cnmultifit._ostream_swigregister
319 _ostream_swigregister(_ostream)
322 _IMP_cnmultifit.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_cnmultifit)
323 IMP_COMPILER_HAS_OVERRIDE = _IMP_cnmultifit.IMP_COMPILER_HAS_OVERRIDE
325 _IMP_cnmultifit.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_cnmultifit)
326 IMP_COMPILER_HAS_FINAL = _IMP_cnmultifit.IMP_COMPILER_HAS_FINAL
328 _IMP_cnmultifit.IMP_HAS_NOEXCEPT_swigconstant(_IMP_cnmultifit)
329 IMP_HAS_NOEXCEPT = _IMP_cnmultifit.IMP_HAS_NOEXCEPT
332 _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
333 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_FILESYSTEM
335 _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
336 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
338 _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
339 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_RANDOM
341 _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
342 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_SYSTEM
344 _IMP_cnmultifit.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
345 IMPCGAL_SHOW_WARNINGS = _IMP_cnmultifit.IMPCGAL_SHOW_WARNINGS
348 _IMP_cnmultifit.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
349 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_ALGEBRA_HAS_IMP_CGAL
351 _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
352 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
354 _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
355 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
357 _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
358 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_RANDOM
360 _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
361 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_SYSTEM
363 _IMP_cnmultifit.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_cnmultifit)
364 IMP_ALGEBRA_HAS_CGAL = _IMP_cnmultifit.IMP_ALGEBRA_HAS_CGAL
366 _IMP_cnmultifit.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_cnmultifit)
367 IMP_ALGEBRA_HAS_ANN = _IMP_cnmultifit.IMP_ALGEBRA_HAS_ANN
369 _IMP_cnmultifit.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
370 IMPALGEBRA_SHOW_WARNINGS = _IMP_cnmultifit.IMPALGEBRA_SHOW_WARNINGS
373 _IMP_cnmultifit.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
374 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_DISPLAY_HAS_IMP_CGAL
376 _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
377 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
379 _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
380 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
382 _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
383 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_RANDOM
385 _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
386 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_SYSTEM
388 _IMP_cnmultifit.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_cnmultifit)
389 IMP_DISPLAY_HAS_CGAL = _IMP_cnmultifit.IMP_DISPLAY_HAS_CGAL
391 _IMP_cnmultifit.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
392 IMPDISPLAY_SHOW_WARNINGS = _IMP_cnmultifit.IMPDISPLAY_SHOW_WARNINGS
395 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
396 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
398 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
399 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
401 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
402 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
404 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
405 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
407 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
408 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
410 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_cnmultifit)
411 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_CGAL
413 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_cnmultifit)
414 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_HDF5
416 _IMP_cnmultifit.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
417 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_cnmultifit.IMPSCOREFUNCTOR_SHOW_WARNINGS
420 _IMP_cnmultifit.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
421 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_STATISTICS_HAS_IMP_CGAL
423 _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
424 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
426 _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
427 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
429 _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
430 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_RANDOM
432 _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
433 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_SYSTEM
435 _IMP_cnmultifit.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_cnmultifit)
436 IMP_STATISTICS_HAS_CGAL = _IMP_cnmultifit.IMP_STATISTICS_HAS_CGAL
438 _IMP_cnmultifit.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
439 IMPSTATISTICS_SHOW_WARNINGS = _IMP_cnmultifit.IMPSTATISTICS_SHOW_WARNINGS
442 _IMP_cnmultifit.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
443 IMP_CORE_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_CORE_HAS_IMP_CGAL
445 _IMP_cnmultifit.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
446 IMP_CORE_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_CORE_HAS_IMP_KERNEL
448 _IMP_cnmultifit.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
449 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_CORE_HAS_BOOST_FILESYSTEM
451 _IMP_cnmultifit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
452 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
454 _IMP_cnmultifit.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
455 IMP_CORE_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_CORE_HAS_BOOST_RANDOM
457 _IMP_cnmultifit.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
458 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_CORE_HAS_BOOST_SYSTEM
460 _IMP_cnmultifit.IMP_CORE_HAS_CGAL_swigconstant(_IMP_cnmultifit)
461 IMP_CORE_HAS_CGAL = _IMP_cnmultifit.IMP_CORE_HAS_CGAL
463 _IMP_cnmultifit.IMP_CORE_HAS_HDF5_swigconstant(_IMP_cnmultifit)
464 IMP_CORE_HAS_HDF5 = _IMP_cnmultifit.IMP_CORE_HAS_HDF5
466 _IMP_cnmultifit.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
467 IMPCORE_SHOW_WARNINGS = _IMP_cnmultifit.IMPCORE_SHOW_WARNINGS
470 _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_cnmultifit)
471 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_ALGEBRA
473 _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
474 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_CGAL
476 _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_cnmultifit)
477 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_DISPLAY
479 _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
480 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_KERNEL
482 _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
483 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
485 _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
486 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
488 _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
489 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
491 _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
492 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_RANDOM
494 _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
495 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_SYSTEM
497 _IMP_cnmultifit.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_cnmultifit)
498 IMP_CONTAINER_HAS_CGAL = _IMP_cnmultifit.IMP_CONTAINER_HAS_CGAL
500 _IMP_cnmultifit.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_cnmultifit)
501 IMP_CONTAINER_HAS_HDF5 = _IMP_cnmultifit.IMP_CONTAINER_HAS_HDF5
503 _IMP_cnmultifit.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
504 IMPCONTAINER_SHOW_WARNINGS = _IMP_cnmultifit.IMPCONTAINER_SHOW_WARNINGS
507 _IMP_cnmultifit.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
508 IMP_ATOM_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_ATOM_HAS_IMP_CGAL
510 _IMP_cnmultifit.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
511 IMP_ATOM_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_ATOM_HAS_IMP_KERNEL
513 _IMP_cnmultifit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
514 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
516 _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
517 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
519 _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
520 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_RANDOM
522 _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
523 IMP_ATOM_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_REGEX
525 _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
526 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_SYSTEM
528 _IMP_cnmultifit.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_cnmultifit)
529 IMP_ATOM_HAS_CGAL = _IMP_cnmultifit.IMP_ATOM_HAS_CGAL
531 _IMP_cnmultifit.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_cnmultifit)
532 IMP_ATOM_HAS_HDF5 = _IMP_cnmultifit.IMP_ATOM_HAS_HDF5
534 _IMP_cnmultifit.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
535 IMPATOM_SHOW_WARNINGS = _IMP_cnmultifit.IMPATOM_SHOW_WARNINGS
537 _IMP_cnmultifit.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_cnmultifit)
538 IMP_ATOM_TYPE_INDEX = _IMP_cnmultifit.IMP_ATOM_TYPE_INDEX
540 _IMP_cnmultifit.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_cnmultifit)
541 IMP_RESIDUE_TYPE_INDEX = _IMP_cnmultifit.IMP_RESIDUE_TYPE_INDEX
543 _IMP_cnmultifit.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_cnmultifit)
544 IMP_HIERARCHY_TYPE_INDEX = _IMP_cnmultifit.IMP_HIERARCHY_TYPE_INDEX
547 _IMP_cnmultifit.IMP_EM_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
548 IMP_EM_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_EM_HAS_IMP_CGAL
550 _IMP_cnmultifit.IMP_EM_HAS_IMP_CONTAINER_swigconstant(_IMP_cnmultifit)
551 IMP_EM_HAS_IMP_CONTAINER = _IMP_cnmultifit.IMP_EM_HAS_IMP_CONTAINER
553 _IMP_cnmultifit.IMP_EM_HAS_IMP_DISPLAY_swigconstant(_IMP_cnmultifit)
554 IMP_EM_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_EM_HAS_IMP_DISPLAY
556 _IMP_cnmultifit.IMP_EM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
557 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_EM_HAS_IMP_SCORE_FUNCTOR
559 _IMP_cnmultifit.IMP_EM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
560 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_EM_HAS_BOOST_FILESYSTEM
562 _IMP_cnmultifit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
563 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
565 _IMP_cnmultifit.IMP_EM_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
566 IMP_EM_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_EM_HAS_BOOST_RANDOM
568 _IMP_cnmultifit.IMP_EM_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
569 IMP_EM_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_EM_HAS_BOOST_REGEX
571 _IMP_cnmultifit.IMP_EM_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
572 IMP_EM_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_EM_HAS_BOOST_SYSTEM
574 _IMP_cnmultifit.IMP_EM_HAS_CGAL_swigconstant(_IMP_cnmultifit)
575 IMP_EM_HAS_CGAL = _IMP_cnmultifit.IMP_EM_HAS_CGAL
577 _IMP_cnmultifit.IMP_EM_HAS_HDF5_swigconstant(_IMP_cnmultifit)
578 IMP_EM_HAS_HDF5 = _IMP_cnmultifit.IMP_EM_HAS_HDF5
580 _IMP_cnmultifit.IMPEM_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
581 IMPEM_SHOW_WARNINGS = _IMP_cnmultifit.IMPEM_SHOW_WARNINGS
584 _IMP_cnmultifit.IMP_RMF_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
585 IMP_RMF_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_RMF_HAS_IMP_CGAL
587 _IMP_cnmultifit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
588 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
590 _IMP_cnmultifit.IMP_RMF_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
591 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_FILESYSTEM
593 _IMP_cnmultifit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
594 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
596 _IMP_cnmultifit.IMP_RMF_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
597 IMP_RMF_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_RANDOM
599 _IMP_cnmultifit.IMP_RMF_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
600 IMP_RMF_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_REGEX
602 _IMP_cnmultifit.IMP_RMF_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
603 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_SYSTEM
605 _IMP_cnmultifit.IMP_RMF_HAS_CGAL_swigconstant(_IMP_cnmultifit)
606 IMP_RMF_HAS_CGAL = _IMP_cnmultifit.IMP_RMF_HAS_CGAL
608 _IMP_cnmultifit.IMP_RMF_HAS_HDF5_swigconstant(_IMP_cnmultifit)
609 IMP_RMF_HAS_HDF5 = _IMP_cnmultifit.IMP_RMF_HAS_HDF5
611 _IMP_cnmultifit.IMPRMF_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
612 IMPRMF_SHOW_WARNINGS = _IMP_cnmultifit.IMPRMF_SHOW_WARNINGS
616 _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_ATOM_swigconstant(_IMP_cnmultifit)
617 IMP_DOMINO_HAS_IMP_ATOM = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_ATOM
619 _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
620 IMP_DOMINO_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_CGAL
622 _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
623 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_KERNEL
625 _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_RMF_swigconstant(_IMP_cnmultifit)
626 IMP_DOMINO_HAS_IMP_RMF = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_RMF
628 _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
629 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
631 _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
632 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_FILESYSTEM
634 _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
635 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
637 _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
638 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_RANDOM
640 _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
641 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_REGEX
643 _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
644 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_SYSTEM
646 _IMP_cnmultifit.IMP_DOMINO_HAS_CGAL_swigconstant(_IMP_cnmultifit)
647 IMP_DOMINO_HAS_CGAL = _IMP_cnmultifit.IMP_DOMINO_HAS_CGAL
649 _IMP_cnmultifit.IMP_DOMINO_HAS_HDF5_swigconstant(_IMP_cnmultifit)
650 IMP_DOMINO_HAS_HDF5 = _IMP_cnmultifit.IMP_DOMINO_HAS_HDF5
652 _IMP_cnmultifit.IMP_DOMINO_HAS_RMF_swigconstant(_IMP_cnmultifit)
653 IMP_DOMINO_HAS_RMF = _IMP_cnmultifit.IMP_DOMINO_HAS_RMF
655 _IMP_cnmultifit.IMPDOMINO_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
656 IMPDOMINO_SHOW_WARNINGS = _IMP_cnmultifit.IMPDOMINO_SHOW_WARNINGS
660 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
661 IMP_MULTIFIT_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_CGAL
663 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_CONTAINER_swigconstant(_IMP_cnmultifit)
664 IMP_MULTIFIT_HAS_IMP_CONTAINER = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_CONTAINER
666 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_DISPLAY_swigconstant(_IMP_cnmultifit)
667 IMP_MULTIFIT_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_DISPLAY
669 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
670 IMP_MULTIFIT_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_KERNEL
672 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_RMF_swigconstant(_IMP_cnmultifit)
673 IMP_MULTIFIT_HAS_IMP_RMF = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_RMF
675 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
676 IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR
678 _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_GRAPH_swigconstant(_IMP_cnmultifit)
679 IMP_MULTIFIT_HAS_BOOST_GRAPH = _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_GRAPH
681 _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
682 IMP_MULTIFIT_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_RANDOM
684 _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
685 IMP_MULTIFIT_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_REGEX
687 _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
688 IMP_MULTIFIT_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_SYSTEM
690 _IMP_cnmultifit.IMP_MULTIFIT_HAS_CGAL_swigconstant(_IMP_cnmultifit)
691 IMP_MULTIFIT_HAS_CGAL = _IMP_cnmultifit.IMP_MULTIFIT_HAS_CGAL
693 _IMP_cnmultifit.IMP_MULTIFIT_HAS_HDF5_swigconstant(_IMP_cnmultifit)
694 IMP_MULTIFIT_HAS_HDF5 = _IMP_cnmultifit.IMP_MULTIFIT_HAS_HDF5
696 _IMP_cnmultifit.IMP_MULTIFIT_HAS_RMF_swigconstant(_IMP_cnmultifit)
697 IMP_MULTIFIT_HAS_RMF = _IMP_cnmultifit.IMP_MULTIFIT_HAS_RMF
699 _IMP_cnmultifit.IMPMULTIFIT_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
700 IMPMULTIFIT_SHOW_WARNINGS = _IMP_cnmultifit.IMPMULTIFIT_SHOW_WARNINGS
703 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
704 IMP_CNMULTIFIT_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_CGAL
706 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_CONTAINER_swigconstant(_IMP_cnmultifit)
707 IMP_CNMULTIFIT_HAS_IMP_CONTAINER = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_CONTAINER
709 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_DISPLAY_swigconstant(_IMP_cnmultifit)
710 IMP_CNMULTIFIT_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_DISPLAY
712 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_DOMINO_swigconstant(_IMP_cnmultifit)
713 IMP_CNMULTIFIT_HAS_IMP_DOMINO = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_DOMINO
715 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
716 IMP_CNMULTIFIT_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_KERNEL
718 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_RMF_swigconstant(_IMP_cnmultifit)
719 IMP_CNMULTIFIT_HAS_IMP_RMF = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_RMF
721 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
722 IMP_CNMULTIFIT_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_SCORE_FUNCTOR
724 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_GRAPH_swigconstant(_IMP_cnmultifit)
725 IMP_CNMULTIFIT_HAS_BOOST_GRAPH = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_GRAPH
727 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
728 IMP_CNMULTIFIT_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_RANDOM
730 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
731 IMP_CNMULTIFIT_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_REGEX
733 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
734 IMP_CNMULTIFIT_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_SYSTEM
736 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_CGAL_swigconstant(_IMP_cnmultifit)
737 IMP_CNMULTIFIT_HAS_CGAL = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_CGAL
739 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_FFTW3_swigconstant(_IMP_cnmultifit)
740 IMP_CNMULTIFIT_HAS_FFTW3 = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_FFTW3
742 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_HDF5_swigconstant(_IMP_cnmultifit)
743 IMP_CNMULTIFIT_HAS_HDF5 = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_HDF5
745 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_RMF_swigconstant(_IMP_cnmultifit)
746 IMP_CNMULTIFIT_HAS_RMF = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_RMF
748 _IMP_cnmultifit.IMPCNMULTIFIT_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
749 IMPCNMULTIFIT_SHOW_WARNINGS = _IMP_cnmultifit.IMPCNMULTIFIT_SHOW_WARNINGS
752 _plural_types.append(
"AlignSymmetrics")
753 _value_types.append(
"AlignSymmetric")
756 CnSymmAxisDetectors=list
757 _plural_types.append(
"CnSymmAxisDetectors")
758 _value_types.append(
"CnSymmAxisDetector")
761 MolCnSymmAxisDetectors=list
762 _plural_types.append(
"MolCnSymmAxisDetectors")
763 _value_types.append(
"MolCnSymmAxisDetector")
765 class CnSymmAxisDetector(object):
766 """Proxy of C++ IMP::cnmultifit::CnSymmAxisDetector class"""
767 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
769 def __init__(self, *args):
771 __init__(IMP::cnmultifit::CnSymmAxisDetector self, int symm_deg, DensityMap dmap, float density_threshold, float top_p=0.8) -> CnSymmAxisDetector
772 __init__(IMP::cnmultifit::CnSymmAxisDetector self, int symm_deg, DensityMap dmap, float density_threshold) -> CnSymmAxisDetector
773 __init__(IMP::cnmultifit::CnSymmAxisDetector self, int symm_deg, IMP::atom::Hierarchies const & mhs) -> CnSymmAxisDetector
775 this = _IMP_cnmultifit.new_CnSymmAxisDetector(*args)
777 self.this.append(this)
782 """get_pca(CnSymmAxisDetector self) -> PrincipalComponentAnalysis3D"""
783 return _IMP_cnmultifit.CnSymmAxisDetector_get_pca(self)
786 def calc_symm_score(self, symm_axis_ind):
787 """calc_symm_score(CnSymmAxisDetector self, int symm_axis_ind) -> float"""
788 return _IMP_cnmultifit.CnSymmAxisDetector_calc_symm_score(self, symm_axis_ind)
791 def get_symmetry_axis(self):
792 """get_symmetry_axis(CnSymmAxisDetector self) -> Vector3D"""
793 return _IMP_cnmultifit.CnSymmAxisDetector_get_symmetry_axis(self)
796 def get_symmetry_axis_index(self):
797 """get_symmetry_axis_index(CnSymmAxisDetector self) -> int"""
798 return _IMP_cnmultifit.CnSymmAxisDetector_get_symmetry_axis_index(self)
801 def get_non_symmetry_axis_length(self):
802 """get_non_symmetry_axis_length(CnSymmAxisDetector self) -> int"""
803 return _IMP_cnmultifit.CnSymmAxisDetector_get_non_symmetry_axis_length(self)
806 def show(self, *args):
808 show(CnSymmAxisDetector self, _ostream out)
809 show(CnSymmAxisDetector self)
811 return _IMP_cnmultifit.CnSymmAxisDetector_show(self, *args)
815 """__str__(CnSymmAxisDetector self) -> std::string"""
816 return _IMP_cnmultifit.CnSymmAxisDetector___str__(self)
820 """__repr__(CnSymmAxisDetector self) -> std::string"""
821 return _IMP_cnmultifit.CnSymmAxisDetector___repr__(self)
823 __swig_destroy__ = _IMP_cnmultifit.delete_CnSymmAxisDetector
824 __del__ =
lambda self:
None
825 CnSymmAxisDetector_swigregister = _IMP_cnmultifit.CnSymmAxisDetector_swigregister
826 CnSymmAxisDetector_swigregister(CnSymmAxisDetector)
828 class MolCnSymmAxisDetector(object):
829 """Proxy of C++ IMP::cnmultifit::MolCnSymmAxisDetector class"""
830 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
832 def __init__(self, symm_deg, mhs):
833 """__init__(IMP::cnmultifit::MolCnSymmAxisDetector self, int symm_deg, IMP::atom::Hierarchies const & mhs) -> MolCnSymmAxisDetector"""
834 this = _IMP_cnmultifit.new_MolCnSymmAxisDetector(symm_deg, mhs)
836 self.this.append(this)
841 """get_pca(MolCnSymmAxisDetector self) -> PrincipalComponentAnalysis3D"""
842 return _IMP_cnmultifit.MolCnSymmAxisDetector_get_pca(self)
845 def get_symmetry_axis(self):
846 """get_symmetry_axis(MolCnSymmAxisDetector self) -> Vector3D"""
847 return _IMP_cnmultifit.MolCnSymmAxisDetector_get_symmetry_axis(self)
850 def get_symmetry_axis_index(self):
851 """get_symmetry_axis_index(MolCnSymmAxisDetector self) -> int"""
852 return _IMP_cnmultifit.MolCnSymmAxisDetector_get_symmetry_axis_index(self)
855 def show(self, *args):
857 show(MolCnSymmAxisDetector self, _ostream out)
858 show(MolCnSymmAxisDetector self)
860 return _IMP_cnmultifit.MolCnSymmAxisDetector_show(self, *args)
863 def calc_symm_score(self, symm_axis_ind):
864 """calc_symm_score(MolCnSymmAxisDetector self, int symm_axis_ind) -> float"""
865 return _IMP_cnmultifit.MolCnSymmAxisDetector_calc_symm_score(self, symm_axis_ind)
869 """__str__(MolCnSymmAxisDetector self) -> std::string"""
870 return _IMP_cnmultifit.MolCnSymmAxisDetector___str__(self)
874 """__repr__(MolCnSymmAxisDetector self) -> std::string"""
875 return _IMP_cnmultifit.MolCnSymmAxisDetector___repr__(self)
877 __swig_destroy__ = _IMP_cnmultifit.delete_MolCnSymmAxisDetector
878 __del__ =
lambda self:
None
879 MolCnSymmAxisDetector_swigregister = _IMP_cnmultifit.MolCnSymmAxisDetector_swigregister
880 MolCnSymmAxisDetector_swigregister(MolCnSymmAxisDetector)
882 class AlignSymmetric(object):
883 """Proxy of C++ IMP::cnmultifit::AlignSymmetric class"""
884 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
886 def __init__(self, dmap, threshold, cn_symm_deg):
887 """__init__(IMP::cnmultifit::AlignSymmetric self, DensityMap dmap, float threshold, int cn_symm_deg) -> AlignSymmetric"""
888 this = _IMP_cnmultifit.new_AlignSymmetric(dmap, threshold, cn_symm_deg)
890 self.this.append(this)
894 def get_sorted_principal_values(self):
895 """get_sorted_principal_values(AlignSymmetric self) -> IMP::Floats"""
896 return _IMP_cnmultifit.AlignSymmetric_get_sorted_principal_values(self)
899 def score_alignment(self, mhs, max_allowed_diff):
900 """score_alignment(AlignSymmetric self, IMP::atom::Hierarchies mhs, float max_allowed_diff) -> int"""
901 return _IMP_cnmultifit.AlignSymmetric_score_alignment(self, mhs, max_allowed_diff)
904 def get_symm_axis_alignments_from_model_to_density(self, mhs, sample_translation, fine_rotation_sampling=True):
906 get_symm_axis_alignments_from_model_to_density(AlignSymmetric self, IMP::atom::Hierarchies mhs, bool sample_translation, bool fine_rotation_sampling=True) -> IMP::algebra::Transformation3Ds
907 get_symm_axis_alignments_from_model_to_density(AlignSymmetric self, IMP::atom::Hierarchies mhs, bool sample_translation) -> IMP::algebra::Transformation3Ds
909 return _IMP_cnmultifit.AlignSymmetric_get_symm_axis_alignments_from_model_to_density(self, mhs, sample_translation, fine_rotation_sampling)
912 def show(self, *args):
914 show(AlignSymmetric self, _ostream out)
915 show(AlignSymmetric self)
917 return _IMP_cnmultifit.AlignSymmetric_show(self, *args)
921 """__str__(AlignSymmetric self) -> std::string"""
922 return _IMP_cnmultifit.AlignSymmetric___str__(self)
926 """__repr__(AlignSymmetric self) -> std::string"""
927 return _IMP_cnmultifit.AlignSymmetric___repr__(self)
929 __swig_destroy__ = _IMP_cnmultifit.delete_AlignSymmetric
930 __del__ =
lambda self:
None
931 AlignSymmetric_swigregister = _IMP_cnmultifit.AlignSymmetric_swigregister
932 AlignSymmetric_swigregister(AlignSymmetric)
935 def generate_cn_transformations(mhs, symm_deg):
936 """generate_cn_transformations(IMP::atom::Hierarchies mhs, int symm_deg) -> IMP::algebra::Transformation3Ds"""
937 return _IMP_cnmultifit.generate_cn_transformations(mhs, symm_deg)
939 def generate_translations_along_symm_axis(mhs, symm_deg):
940 """generate_translations_along_symm_axis(IMP::atom::Hierarchies mhs, int symm_deg) -> IMP::algebra::Transformation3Ds"""
941 return _IMP_cnmultifit.generate_translations_along_symm_axis(mhs, symm_deg)
943 def symmetry_local_fitting(mhs, cn_symm_deg, dn_symm_deg, dmap, num_of_trans_to_consider):
944 """symmetry_local_fitting(IMP::atom::Hierarchies mhs, int cn_symm_deg, int dn_symm_deg, DensityMap dmap, int num_of_trans_to_consider) -> FittingSolutions"""
945 return _IMP_cnmultifit.symmetry_local_fitting(mhs, cn_symm_deg, dn_symm_deg, dmap, num_of_trans_to_consider)
947 def build_cn_dens_assembly(subunit_dens, asmb_dens_header, monomer_t, symm_deg):
948 """build_cn_dens_assembly(DensityMap subunit_dens, DensityHeader asmb_dens_header, Transformation3D monomer_t, int symm_deg) -> DensityMap"""
949 return _IMP_cnmultifit.build_cn_dens_assembly(subunit_dens, asmb_dens_header, monomer_t, symm_deg)
951 def transform_cn_assembly(mhs, monomer_t):
952 """transform_cn_assembly(IMP::atom::Hierarchies mhs, Transformation3D monomer_t)"""
953 return _IMP_cnmultifit.transform_cn_assembly(mhs, monomer_t)
957 fit_cn_assembly(IMP::atom::Hierarchies mhs, int dn_symm_deg, DensityMap dmap, float threshold, AlignSymmetric aligner, bool sample_translation=False, bool fine_rotational_sampling=True) -> FittingSolutions
958 fit_cn_assembly(IMP::atom::Hierarchies mhs, int dn_symm_deg, DensityMap dmap, float threshold, AlignSymmetric aligner, bool sample_translation=False) -> FittingSolutions
959 fit_cn_assembly(IMP::atom::Hierarchies mhs, int dn_symm_deg, DensityMap dmap, float threshold, AlignSymmetric aligner) -> FittingSolutions
960 fit_cn_assembly(DensityMap asmb_map, MolCnSymmAxisDetector symm_mol, DensityMap dmap, CnSymmAxisDetector symm_map, int symm_deg, float threshold) -> FittingSolutions
962 return _IMP_cnmultifit.fit_cn_assembly(*args)
964 def pca_matching(pca1, pca2, resolution):
965 """pca_matching(PrincipalComponentAnalysis3D pca1, PrincipalComponentAnalysis3D pca2, float resolution) -> bool"""
966 return _IMP_cnmultifit.pca_matching(pca1, pca2, resolution)
969 """cn_symm_score(IMP::atom::Hierarchies mhs, Vector3D center, Vector3D direction, int symm_deg) -> float"""
970 return _IMP_cnmultifit.cn_symm_score(mhs, center, direction, symm_deg)
972 def prune_by_pca(param_fn, sols, dn=1):
974 prune_by_pca(std::string const & param_fn, IMP::multifit::FittingSolutionRecords const & sols, int dn=1) -> IMP::multifit::FittingSolutionRecords
975 prune_by_pca(std::string const & param_fn, IMP::multifit::FittingSolutionRecords const & sols) -> IMP::multifit::FittingSolutionRecords
977 return _IMP_cnmultifit.prune_by_pca(param_fn, sols, dn)
979 def calc_transformation_around_axis(a, b, angle_rad):
980 """calc_transformation_around_axis(Vector3D a, Vector3D b, float angle_rad) -> Transformation3D"""
981 return _IMP_cnmultifit.calc_transformation_around_axis(a, b, angle_rad)
984 """get_cn_rmsd(IMP::atom::Hierarchies mh1, IMP::atom::Hierarchies mh2) -> float"""
985 return _IMP_cnmultifit.get_cn_rmsd(mh1, mh2)
989 do_all_fitting(std::string const param_filename, std::string const chimera_filename)
990 do_all_fitting(std::string const param_filename)
992 return _IMP_cnmultifit.do_all_fitting(*args)
994 def get_rmsd_for_models(param_filename, trans_filename, ref_filename, start_model=0, end_model=-1):
996 get_rmsd_for_models(std::string const param_filename, std::string const trans_filename, std::string const ref_filename, int start_model=0, int end_model=-1) -> IMP::Floats
997 get_rmsd_for_models(std::string const param_filename, std::string const trans_filename, std::string const ref_filename, int start_model=0) -> IMP::Floats
998 get_rmsd_for_models(std::string const param_filename, std::string const trans_filename, std::string const ref_filename) -> IMP::Floats
1000 return _IMP_cnmultifit.get_rmsd_for_models(param_filename, trans_filename, ref_filename, start_model, end_model)
1002 _all_commands = [
"build",
"rmsd",
"surface",
1003 "param",
"chimera_models"]
1006 def get_module_version():
1007 """get_module_version() -> std::string const"""
1008 return _IMP_cnmultifit.get_module_version()
1011 """get_example_path(std::string fname) -> std::string"""
1012 return _IMP_cnmultifit.get_example_path(fname)
1015 """get_data_path(std::string fname) -> std::string"""
1016 return _IMP_cnmultifit.get_data_path(fname)
1018 from .
import _version_check
1019 _version_check.check_version(get_module_version())
1020 __version__ = get_module_version()
Various classes to hold sets of particles.
void do_all_fitting(const std::string param_filename, const std::string chimera_filename="")
High level interface to build cyclic symmetric complexes.
Make CGAL functionality available to IMP.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Composable functors to implement scores via compile-time composition.
Code to compute statistical measures.
float cn_symm_score(atom::Hierarchies mhs, const algebra::Vector3D ¢er, const algebra::Vector3D &direction, int symm_deg)
scores an input vector as a symmetry axis
Fitting atomic structures into a cryo-electron microscopy density map.
Basic utilities for handling cryo-electron microscopy 3D density maps.
float get_cn_rmsd(atom::Hierarchies mh1, atom::Hierarchies mh2)
Find correspondence between the two rings and calculate rmsd.
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
em::FittingSolutions fit_cn_assembly(atom::Hierarchies mhs, int dn_symm_deg, em::DensityMap *dmap, float threshold, const AlignSymmetric &aligner, bool sample_translation=false, bool fine_rotational_sampling=true)
Fit a symmetric model to its density.
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
Support for the RMF file format for storing hierarchical molecular data and markup.
Divide-and-conquer inferential optimization in discrete space.