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IMP Reference Guide  2.6.1
The Integrative Modeling Platform
cnmultifit/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2016 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_cnmultifit', [dirname(__file__)])
23  except ImportError:
24  import _IMP_cnmultifit
25  return _IMP_cnmultifit
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_cnmultifit', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_cnmultifit = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_cnmultifit
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_CNMULTIFIT_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_CNMULTIFIT_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_cnmultifit.delete_IMP_CNMULTIFIT_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_CNMULTIFIT_SwigPyIterator self) -> PyObject *"""
125  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_CNMULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_CNMULTIFIT_SwigPyIterator
131  incr(IMP_CNMULTIFIT_SwigPyIterator self) -> IMP_CNMULTIFIT_SwigPyIterator
132  """
133  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_CNMULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_CNMULTIFIT_SwigPyIterator
139  decr(IMP_CNMULTIFIT_SwigPyIterator self) -> IMP_CNMULTIFIT_SwigPyIterator
140  """
141  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> bool"""
151  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_CNMULTIFIT_SwigPyIterator self) -> IMP_CNMULTIFIT_SwigPyIterator"""
156  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_CNMULTIFIT_SwigPyIterator self) -> PyObject *"""
161  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_CNMULTIFIT_SwigPyIterator self) -> PyObject *"""
166  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_CNMULTIFIT_SwigPyIterator self) -> PyObject *"""
171  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator"""
176  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> bool"""
181  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> bool"""
186  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator"""
191  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator"""
196  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator"""
201  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator
207  __sub__(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_CNMULTIFIT_SwigPyIterator_swigregister = _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_swigregister
214 IMP_CNMULTIFIT_SwigPyIterator_swigregister(IMP_CNMULTIFIT_SwigPyIterator)
215 
216 
217 _value_types=[]
218 _object_types=[]
219 _raii_types=[]
220 _plural_types=[]
221 
222 
223 _IMP_cnmultifit.IMP_DEBUG_swigconstant(_IMP_cnmultifit)
224 IMP_DEBUG = _IMP_cnmultifit.IMP_DEBUG
225 
226 _IMP_cnmultifit.IMP_RELEASE_swigconstant(_IMP_cnmultifit)
227 IMP_RELEASE = _IMP_cnmultifit.IMP_RELEASE
228 
229 _IMP_cnmultifit.IMP_SILENT_swigconstant(_IMP_cnmultifit)
230 IMP_SILENT = _IMP_cnmultifit.IMP_SILENT
231 
232 _IMP_cnmultifit.IMP_PROGRESS_swigconstant(_IMP_cnmultifit)
233 IMP_PROGRESS = _IMP_cnmultifit.IMP_PROGRESS
234 
235 _IMP_cnmultifit.IMP_TERSE_swigconstant(_IMP_cnmultifit)
236 IMP_TERSE = _IMP_cnmultifit.IMP_TERSE
237 
238 _IMP_cnmultifit.IMP_VERBOSE_swigconstant(_IMP_cnmultifit)
239 IMP_VERBOSE = _IMP_cnmultifit.IMP_VERBOSE
240 
241 _IMP_cnmultifit.IMP_MEMORY_swigconstant(_IMP_cnmultifit)
242 IMP_MEMORY = _IMP_cnmultifit.IMP_MEMORY
243 
244 _IMP_cnmultifit.IMP_NONE_swigconstant(_IMP_cnmultifit)
245 IMP_NONE = _IMP_cnmultifit.IMP_NONE
246 
247 _IMP_cnmultifit.IMP_USAGE_swigconstant(_IMP_cnmultifit)
248 IMP_USAGE = _IMP_cnmultifit.IMP_USAGE
249 
250 _IMP_cnmultifit.IMP_INTERNAL_swigconstant(_IMP_cnmultifit)
251 IMP_INTERNAL = _IMP_cnmultifit.IMP_INTERNAL
252 
253 _IMP_cnmultifit.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_cnmultifit)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_cnmultifit.IMP_KERNEL_HAS_LOG4CXX
255 
256 _IMP_cnmultifit.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_cnmultifit)
257 IMP_COMPILER_HAS_AUTO = _IMP_cnmultifit.IMP_COMPILER_HAS_AUTO
258 
259 _IMP_cnmultifit.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_cnmultifit)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_cnmultifit.IMP_COMPILER_HAS_DEBUG_VECTOR
261 
262 _IMP_cnmultifit.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_cnmultifit)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_cnmultifit.IMP_COMPILER_HAS_UNIQUE_PTR
264 
265 _IMP_cnmultifit.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_KERNEL_HAS_BOOST_RANDOM
267 
268 _IMP_cnmultifit.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_cnmultifit)
269 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_cnmultifit.IMP_KERNEL_HAS_GPERFTOOLS
270 
271 _IMP_cnmultifit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_cnmultifit)
272 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_cnmultifit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
273 
274 _IMP_cnmultifit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_cnmultifit)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_cnmultifit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
276 
277 _IMP_cnmultifit.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
278 IMPKERNEL_SHOW_WARNINGS = _IMP_cnmultifit.IMPKERNEL_SHOW_WARNINGS
279 
280 import sys
281 class _DirectorObjects(object):
282  """@internal Simple class to keep references to director objects
283  to prevent premature deletion."""
284  def __init__(self):
285  self._objects = []
286  def register(self, obj):
287  """Take a reference to a director object; will only work for
288  refcounted C++ classes"""
289  if hasattr(obj, 'get_ref_count'):
290  self._objects.append(obj)
291  def cleanup(self):
292  """Only drop our reference and allow cleanup by Python if no other
293  Python references exist (we hold 3 references: one in self._objects,
294  one in x, and one in the argument list for getrefcount) *and* no
295  other C++ references exist (the Python object always holds one)"""
296  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
297  or x.get_ref_count() > 1]
298 # Do in two steps so the references are kept until the end of the
299 # function (deleting references may trigger a fresh call to this method)
300  self._objects = objs
301  def get_object_count(self):
302  """Get number of director objects (useful for testing only)"""
303  return len(self._objects)
304 _director_objects = _DirectorObjects()
305 
306 class _ostream(object):
307  """Proxy of C++ std::ostream class"""
308  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
309 
310  def __init__(self, *args, **kwargs):
311  raise AttributeError("No constructor defined")
312  __repr__ = _swig_repr
313 
314  def write(self, osa_buf):
315  """write(_ostream self, char const * osa_buf)"""
316  return _IMP_cnmultifit._ostream_write(self, osa_buf)
317 
318 _ostream_swigregister = _IMP_cnmultifit._ostream_swigregister
319 _ostream_swigregister(_ostream)
320 
321 
322 _IMP_cnmultifit.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_cnmultifit)
323 IMP_COMPILER_HAS_OVERRIDE = _IMP_cnmultifit.IMP_COMPILER_HAS_OVERRIDE
324 
325 _IMP_cnmultifit.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_cnmultifit)
326 IMP_COMPILER_HAS_FINAL = _IMP_cnmultifit.IMP_COMPILER_HAS_FINAL
327 
328 _IMP_cnmultifit.IMP_HAS_NOEXCEPT_swigconstant(_IMP_cnmultifit)
329 IMP_HAS_NOEXCEPT = _IMP_cnmultifit.IMP_HAS_NOEXCEPT
330 import IMP
331 
332 _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
333 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_FILESYSTEM
334 
335 _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
336 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
337 
338 _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
339 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_RANDOM
340 
341 _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
342 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_SYSTEM
343 
344 _IMP_cnmultifit.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
345 IMPCGAL_SHOW_WARNINGS = _IMP_cnmultifit.IMPCGAL_SHOW_WARNINGS
346 import IMP.cgal
347 
348 _IMP_cnmultifit.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
349 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_ALGEBRA_HAS_IMP_CGAL
350 
351 _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
352 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
353 
354 _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
355 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
356 
357 _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
358 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_RANDOM
359 
360 _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
361 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_SYSTEM
362 
363 _IMP_cnmultifit.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_cnmultifit)
364 IMP_ALGEBRA_HAS_CGAL = _IMP_cnmultifit.IMP_ALGEBRA_HAS_CGAL
365 
366 _IMP_cnmultifit.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_cnmultifit)
367 IMP_ALGEBRA_HAS_ANN = _IMP_cnmultifit.IMP_ALGEBRA_HAS_ANN
368 
369 _IMP_cnmultifit.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
370 IMPALGEBRA_SHOW_WARNINGS = _IMP_cnmultifit.IMPALGEBRA_SHOW_WARNINGS
371 import IMP.algebra
372 
373 _IMP_cnmultifit.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
374 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_DISPLAY_HAS_IMP_CGAL
375 
376 _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
377 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
378 
379 _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
380 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
381 
382 _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
383 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_RANDOM
384 
385 _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
386 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_SYSTEM
387 
388 _IMP_cnmultifit.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_cnmultifit)
389 IMP_DISPLAY_HAS_CGAL = _IMP_cnmultifit.IMP_DISPLAY_HAS_CGAL
390 
391 _IMP_cnmultifit.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
392 IMPDISPLAY_SHOW_WARNINGS = _IMP_cnmultifit.IMPDISPLAY_SHOW_WARNINGS
393 import IMP.display
394 
395 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
396 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
397 
398 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
399 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
400 
401 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
402 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
403 
404 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
405 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
406 
407 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
408 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
409 
410 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_cnmultifit)
411 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_CGAL
412 
413 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_cnmultifit)
414 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_HDF5
415 
416 _IMP_cnmultifit.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
417 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_cnmultifit.IMPSCOREFUNCTOR_SHOW_WARNINGS
418 import IMP.score_functor
419 
420 _IMP_cnmultifit.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
421 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_STATISTICS_HAS_IMP_CGAL
422 
423 _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
424 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
425 
426 _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
427 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
428 
429 _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
430 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_RANDOM
431 
432 _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
433 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_SYSTEM
434 
435 _IMP_cnmultifit.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_cnmultifit)
436 IMP_STATISTICS_HAS_CGAL = _IMP_cnmultifit.IMP_STATISTICS_HAS_CGAL
437 
438 _IMP_cnmultifit.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
439 IMPSTATISTICS_SHOW_WARNINGS = _IMP_cnmultifit.IMPSTATISTICS_SHOW_WARNINGS
440 import IMP.statistics
441 
442 _IMP_cnmultifit.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
443 IMP_CORE_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_CORE_HAS_IMP_CGAL
444 
445 _IMP_cnmultifit.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
446 IMP_CORE_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_CORE_HAS_IMP_KERNEL
447 
448 _IMP_cnmultifit.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
449 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_CORE_HAS_BOOST_FILESYSTEM
450 
451 _IMP_cnmultifit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
452 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
453 
454 _IMP_cnmultifit.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
455 IMP_CORE_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_CORE_HAS_BOOST_RANDOM
456 
457 _IMP_cnmultifit.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
458 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_CORE_HAS_BOOST_SYSTEM
459 
460 _IMP_cnmultifit.IMP_CORE_HAS_CGAL_swigconstant(_IMP_cnmultifit)
461 IMP_CORE_HAS_CGAL = _IMP_cnmultifit.IMP_CORE_HAS_CGAL
462 
463 _IMP_cnmultifit.IMP_CORE_HAS_HDF5_swigconstant(_IMP_cnmultifit)
464 IMP_CORE_HAS_HDF5 = _IMP_cnmultifit.IMP_CORE_HAS_HDF5
465 
466 _IMP_cnmultifit.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
467 IMPCORE_SHOW_WARNINGS = _IMP_cnmultifit.IMPCORE_SHOW_WARNINGS
468 import IMP.core
469 
470 _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_cnmultifit)
471 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_ALGEBRA
472 
473 _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
474 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_CGAL
475 
476 _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_cnmultifit)
477 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_DISPLAY
478 
479 _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
480 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_KERNEL
481 
482 _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
483 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
484 
485 _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
486 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
487 
488 _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
489 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
490 
491 _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
492 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_RANDOM
493 
494 _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
495 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_SYSTEM
496 
497 _IMP_cnmultifit.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_cnmultifit)
498 IMP_CONTAINER_HAS_CGAL = _IMP_cnmultifit.IMP_CONTAINER_HAS_CGAL
499 
500 _IMP_cnmultifit.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_cnmultifit)
501 IMP_CONTAINER_HAS_HDF5 = _IMP_cnmultifit.IMP_CONTAINER_HAS_HDF5
502 
503 _IMP_cnmultifit.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
504 IMPCONTAINER_SHOW_WARNINGS = _IMP_cnmultifit.IMPCONTAINER_SHOW_WARNINGS
505 import IMP.container
506 
507 _IMP_cnmultifit.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
508 IMP_ATOM_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_ATOM_HAS_IMP_CGAL
509 
510 _IMP_cnmultifit.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
511 IMP_ATOM_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_ATOM_HAS_IMP_KERNEL
512 
513 _IMP_cnmultifit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
514 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
515 
516 _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
517 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
518 
519 _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
520 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_RANDOM
521 
522 _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
523 IMP_ATOM_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_REGEX
524 
525 _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
526 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_SYSTEM
527 
528 _IMP_cnmultifit.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_cnmultifit)
529 IMP_ATOM_HAS_CGAL = _IMP_cnmultifit.IMP_ATOM_HAS_CGAL
530 
531 _IMP_cnmultifit.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_cnmultifit)
532 IMP_ATOM_HAS_HDF5 = _IMP_cnmultifit.IMP_ATOM_HAS_HDF5
533 
534 _IMP_cnmultifit.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
535 IMPATOM_SHOW_WARNINGS = _IMP_cnmultifit.IMPATOM_SHOW_WARNINGS
536 
537 _IMP_cnmultifit.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_cnmultifit)
538 IMP_ATOM_TYPE_INDEX = _IMP_cnmultifit.IMP_ATOM_TYPE_INDEX
539 
540 _IMP_cnmultifit.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_cnmultifit)
541 IMP_RESIDUE_TYPE_INDEX = _IMP_cnmultifit.IMP_RESIDUE_TYPE_INDEX
542 
543 _IMP_cnmultifit.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_cnmultifit)
544 IMP_HIERARCHY_TYPE_INDEX = _IMP_cnmultifit.IMP_HIERARCHY_TYPE_INDEX
545 import IMP.atom
546 
547 _IMP_cnmultifit.IMP_EM_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
548 IMP_EM_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_EM_HAS_IMP_CGAL
549 
550 _IMP_cnmultifit.IMP_EM_HAS_IMP_CONTAINER_swigconstant(_IMP_cnmultifit)
551 IMP_EM_HAS_IMP_CONTAINER = _IMP_cnmultifit.IMP_EM_HAS_IMP_CONTAINER
552 
553 _IMP_cnmultifit.IMP_EM_HAS_IMP_DISPLAY_swigconstant(_IMP_cnmultifit)
554 IMP_EM_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_EM_HAS_IMP_DISPLAY
555 
556 _IMP_cnmultifit.IMP_EM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
557 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_EM_HAS_IMP_SCORE_FUNCTOR
558 
559 _IMP_cnmultifit.IMP_EM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
560 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_EM_HAS_BOOST_FILESYSTEM
561 
562 _IMP_cnmultifit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
563 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
564 
565 _IMP_cnmultifit.IMP_EM_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
566 IMP_EM_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_EM_HAS_BOOST_RANDOM
567 
568 _IMP_cnmultifit.IMP_EM_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
569 IMP_EM_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_EM_HAS_BOOST_REGEX
570 
571 _IMP_cnmultifit.IMP_EM_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
572 IMP_EM_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_EM_HAS_BOOST_SYSTEM
573 
574 _IMP_cnmultifit.IMP_EM_HAS_CGAL_swigconstant(_IMP_cnmultifit)
575 IMP_EM_HAS_CGAL = _IMP_cnmultifit.IMP_EM_HAS_CGAL
576 
577 _IMP_cnmultifit.IMP_EM_HAS_HDF5_swigconstant(_IMP_cnmultifit)
578 IMP_EM_HAS_HDF5 = _IMP_cnmultifit.IMP_EM_HAS_HDF5
579 
580 _IMP_cnmultifit.IMPEM_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
581 IMPEM_SHOW_WARNINGS = _IMP_cnmultifit.IMPEM_SHOW_WARNINGS
582 import IMP.em
583 
584 _IMP_cnmultifit.IMP_RMF_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
585 IMP_RMF_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_RMF_HAS_IMP_CGAL
586 
587 _IMP_cnmultifit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
588 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
589 
590 _IMP_cnmultifit.IMP_RMF_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
591 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_FILESYSTEM
592 
593 _IMP_cnmultifit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
594 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
595 
596 _IMP_cnmultifit.IMP_RMF_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
597 IMP_RMF_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_RANDOM
598 
599 _IMP_cnmultifit.IMP_RMF_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
600 IMP_RMF_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_REGEX
601 
602 _IMP_cnmultifit.IMP_RMF_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
603 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_SYSTEM
604 
605 _IMP_cnmultifit.IMP_RMF_HAS_CGAL_swigconstant(_IMP_cnmultifit)
606 IMP_RMF_HAS_CGAL = _IMP_cnmultifit.IMP_RMF_HAS_CGAL
607 
608 _IMP_cnmultifit.IMP_RMF_HAS_HDF5_swigconstant(_IMP_cnmultifit)
609 IMP_RMF_HAS_HDF5 = _IMP_cnmultifit.IMP_RMF_HAS_HDF5
610 
611 _IMP_cnmultifit.IMPRMF_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
612 IMPRMF_SHOW_WARNINGS = _IMP_cnmultifit.IMPRMF_SHOW_WARNINGS
613 import IMP.rmf
614 import RMF
615 
616 _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_ATOM_swigconstant(_IMP_cnmultifit)
617 IMP_DOMINO_HAS_IMP_ATOM = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_ATOM
618 
619 _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
620 IMP_DOMINO_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_CGAL
621 
622 _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
623 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_KERNEL
624 
625 _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_RMF_swigconstant(_IMP_cnmultifit)
626 IMP_DOMINO_HAS_IMP_RMF = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_RMF
627 
628 _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
629 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
630 
631 _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
632 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_FILESYSTEM
633 
634 _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
635 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
636 
637 _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
638 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_RANDOM
639 
640 _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
641 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_REGEX
642 
643 _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
644 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_SYSTEM
645 
646 _IMP_cnmultifit.IMP_DOMINO_HAS_CGAL_swigconstant(_IMP_cnmultifit)
647 IMP_DOMINO_HAS_CGAL = _IMP_cnmultifit.IMP_DOMINO_HAS_CGAL
648 
649 _IMP_cnmultifit.IMP_DOMINO_HAS_HDF5_swigconstant(_IMP_cnmultifit)
650 IMP_DOMINO_HAS_HDF5 = _IMP_cnmultifit.IMP_DOMINO_HAS_HDF5
651 
652 _IMP_cnmultifit.IMP_DOMINO_HAS_RMF_swigconstant(_IMP_cnmultifit)
653 IMP_DOMINO_HAS_RMF = _IMP_cnmultifit.IMP_DOMINO_HAS_RMF
654 
655 _IMP_cnmultifit.IMPDOMINO_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
656 IMPDOMINO_SHOW_WARNINGS = _IMP_cnmultifit.IMPDOMINO_SHOW_WARNINGS
657 import RMF_HDF5
658 import IMP.domino
659 
660 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
661 IMP_MULTIFIT_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_CGAL
662 
663 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_CONTAINER_swigconstant(_IMP_cnmultifit)
664 IMP_MULTIFIT_HAS_IMP_CONTAINER = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_CONTAINER
665 
666 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_DISPLAY_swigconstant(_IMP_cnmultifit)
667 IMP_MULTIFIT_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_DISPLAY
668 
669 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
670 IMP_MULTIFIT_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_KERNEL
671 
672 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_RMF_swigconstant(_IMP_cnmultifit)
673 IMP_MULTIFIT_HAS_IMP_RMF = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_RMF
674 
675 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
676 IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR
677 
678 _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_GRAPH_swigconstant(_IMP_cnmultifit)
679 IMP_MULTIFIT_HAS_BOOST_GRAPH = _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_GRAPH
680 
681 _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
682 IMP_MULTIFIT_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_RANDOM
683 
684 _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
685 IMP_MULTIFIT_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_REGEX
686 
687 _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
688 IMP_MULTIFIT_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_SYSTEM
689 
690 _IMP_cnmultifit.IMP_MULTIFIT_HAS_CGAL_swigconstant(_IMP_cnmultifit)
691 IMP_MULTIFIT_HAS_CGAL = _IMP_cnmultifit.IMP_MULTIFIT_HAS_CGAL
692 
693 _IMP_cnmultifit.IMP_MULTIFIT_HAS_HDF5_swigconstant(_IMP_cnmultifit)
694 IMP_MULTIFIT_HAS_HDF5 = _IMP_cnmultifit.IMP_MULTIFIT_HAS_HDF5
695 
696 _IMP_cnmultifit.IMP_MULTIFIT_HAS_RMF_swigconstant(_IMP_cnmultifit)
697 IMP_MULTIFIT_HAS_RMF = _IMP_cnmultifit.IMP_MULTIFIT_HAS_RMF
698 
699 _IMP_cnmultifit.IMPMULTIFIT_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
700 IMPMULTIFIT_SHOW_WARNINGS = _IMP_cnmultifit.IMPMULTIFIT_SHOW_WARNINGS
701 import IMP.multifit
702 
703 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
704 IMP_CNMULTIFIT_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_CGAL
705 
706 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_CONTAINER_swigconstant(_IMP_cnmultifit)
707 IMP_CNMULTIFIT_HAS_IMP_CONTAINER = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_CONTAINER
708 
709 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_DISPLAY_swigconstant(_IMP_cnmultifit)
710 IMP_CNMULTIFIT_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_DISPLAY
711 
712 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_DOMINO_swigconstant(_IMP_cnmultifit)
713 IMP_CNMULTIFIT_HAS_IMP_DOMINO = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_DOMINO
714 
715 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
716 IMP_CNMULTIFIT_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_KERNEL
717 
718 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_RMF_swigconstant(_IMP_cnmultifit)
719 IMP_CNMULTIFIT_HAS_IMP_RMF = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_RMF
720 
721 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
722 IMP_CNMULTIFIT_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_SCORE_FUNCTOR
723 
724 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_GRAPH_swigconstant(_IMP_cnmultifit)
725 IMP_CNMULTIFIT_HAS_BOOST_GRAPH = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_GRAPH
726 
727 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
728 IMP_CNMULTIFIT_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_RANDOM
729 
730 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
731 IMP_CNMULTIFIT_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_REGEX
732 
733 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
734 IMP_CNMULTIFIT_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_SYSTEM
735 
736 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_CGAL_swigconstant(_IMP_cnmultifit)
737 IMP_CNMULTIFIT_HAS_CGAL = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_CGAL
738 
739 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_FFTW3_swigconstant(_IMP_cnmultifit)
740 IMP_CNMULTIFIT_HAS_FFTW3 = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_FFTW3
741 
742 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_HDF5_swigconstant(_IMP_cnmultifit)
743 IMP_CNMULTIFIT_HAS_HDF5 = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_HDF5
744 
745 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_RMF_swigconstant(_IMP_cnmultifit)
746 IMP_CNMULTIFIT_HAS_RMF = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_RMF
747 
748 _IMP_cnmultifit.IMPCNMULTIFIT_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
749 IMPCNMULTIFIT_SHOW_WARNINGS = _IMP_cnmultifit.IMPCNMULTIFIT_SHOW_WARNINGS
750 
751 AlignSymmetrics=list
752 _plural_types.append("AlignSymmetrics")
753 _value_types.append("AlignSymmetric")
754 
755 
756 CnSymmAxisDetectors=list
757 _plural_types.append("CnSymmAxisDetectors")
758 _value_types.append("CnSymmAxisDetector")
759 
760 
761 MolCnSymmAxisDetectors=list
762 _plural_types.append("MolCnSymmAxisDetectors")
763 _value_types.append("MolCnSymmAxisDetector")
764 
765 class CnSymmAxisDetector(object):
766  """Proxy of C++ IMP::cnmultifit::CnSymmAxisDetector class"""
767  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
768 
769  def __init__(self, *args):
770  """
771  __init__(IMP::cnmultifit::CnSymmAxisDetector self, int symm_deg, DensityMap dmap, float density_threshold, float top_p=0.8) -> CnSymmAxisDetector
772  __init__(IMP::cnmultifit::CnSymmAxisDetector self, int symm_deg, DensityMap dmap, float density_threshold) -> CnSymmAxisDetector
773  __init__(IMP::cnmultifit::CnSymmAxisDetector self, int symm_deg, IMP::atom::Hierarchies const & mhs) -> CnSymmAxisDetector
774  """
775  this = _IMP_cnmultifit.new_CnSymmAxisDetector(*args)
776  try:
777  self.this.append(this)
778  except:
779  self.this = this
780 
781  def get_pca(self):
782  """get_pca(CnSymmAxisDetector self) -> PrincipalComponentAnalysis3D"""
783  return _IMP_cnmultifit.CnSymmAxisDetector_get_pca(self)
784 
785 
786  def calc_symm_score(self, symm_axis_ind):
787  """calc_symm_score(CnSymmAxisDetector self, int symm_axis_ind) -> float"""
788  return _IMP_cnmultifit.CnSymmAxisDetector_calc_symm_score(self, symm_axis_ind)
789 
790 
791  def get_symmetry_axis(self):
792  """get_symmetry_axis(CnSymmAxisDetector self) -> Vector3D"""
793  return _IMP_cnmultifit.CnSymmAxisDetector_get_symmetry_axis(self)
794 
795 
796  def get_symmetry_axis_index(self):
797  """get_symmetry_axis_index(CnSymmAxisDetector self) -> int"""
798  return _IMP_cnmultifit.CnSymmAxisDetector_get_symmetry_axis_index(self)
799 
800 
801  def get_non_symmetry_axis_length(self):
802  """get_non_symmetry_axis_length(CnSymmAxisDetector self) -> int"""
803  return _IMP_cnmultifit.CnSymmAxisDetector_get_non_symmetry_axis_length(self)
804 
805 
806  def show(self, *args):
807  """
808  show(CnSymmAxisDetector self, _ostream out)
809  show(CnSymmAxisDetector self)
810  """
811  return _IMP_cnmultifit.CnSymmAxisDetector_show(self, *args)
812 
813 
814  def __str__(self):
815  """__str__(CnSymmAxisDetector self) -> std::string"""
816  return _IMP_cnmultifit.CnSymmAxisDetector___str__(self)
817 
818 
819  def __repr__(self):
820  """__repr__(CnSymmAxisDetector self) -> std::string"""
821  return _IMP_cnmultifit.CnSymmAxisDetector___repr__(self)
822 
823  __swig_destroy__ = _IMP_cnmultifit.delete_CnSymmAxisDetector
824  __del__ = lambda self: None
825 CnSymmAxisDetector_swigregister = _IMP_cnmultifit.CnSymmAxisDetector_swigregister
826 CnSymmAxisDetector_swigregister(CnSymmAxisDetector)
827 
828 class MolCnSymmAxisDetector(object):
829  """Proxy of C++ IMP::cnmultifit::MolCnSymmAxisDetector class"""
830  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
831 
832  def __init__(self, symm_deg, mhs):
833  """__init__(IMP::cnmultifit::MolCnSymmAxisDetector self, int symm_deg, IMP::atom::Hierarchies const & mhs) -> MolCnSymmAxisDetector"""
834  this = _IMP_cnmultifit.new_MolCnSymmAxisDetector(symm_deg, mhs)
835  try:
836  self.this.append(this)
837  except:
838  self.this = this
839 
840  def get_pca(self):
841  """get_pca(MolCnSymmAxisDetector self) -> PrincipalComponentAnalysis3D"""
842  return _IMP_cnmultifit.MolCnSymmAxisDetector_get_pca(self)
843 
844 
845  def get_symmetry_axis(self):
846  """get_symmetry_axis(MolCnSymmAxisDetector self) -> Vector3D"""
847  return _IMP_cnmultifit.MolCnSymmAxisDetector_get_symmetry_axis(self)
848 
849 
850  def get_symmetry_axis_index(self):
851  """get_symmetry_axis_index(MolCnSymmAxisDetector self) -> int"""
852  return _IMP_cnmultifit.MolCnSymmAxisDetector_get_symmetry_axis_index(self)
853 
854 
855  def show(self, *args):
856  """
857  show(MolCnSymmAxisDetector self, _ostream out)
858  show(MolCnSymmAxisDetector self)
859  """
860  return _IMP_cnmultifit.MolCnSymmAxisDetector_show(self, *args)
861 
862 
863  def calc_symm_score(self, symm_axis_ind):
864  """calc_symm_score(MolCnSymmAxisDetector self, int symm_axis_ind) -> float"""
865  return _IMP_cnmultifit.MolCnSymmAxisDetector_calc_symm_score(self, symm_axis_ind)
866 
867 
868  def __str__(self):
869  """__str__(MolCnSymmAxisDetector self) -> std::string"""
870  return _IMP_cnmultifit.MolCnSymmAxisDetector___str__(self)
871 
872 
873  def __repr__(self):
874  """__repr__(MolCnSymmAxisDetector self) -> std::string"""
875  return _IMP_cnmultifit.MolCnSymmAxisDetector___repr__(self)
876 
877  __swig_destroy__ = _IMP_cnmultifit.delete_MolCnSymmAxisDetector
878  __del__ = lambda self: None
879 MolCnSymmAxisDetector_swigregister = _IMP_cnmultifit.MolCnSymmAxisDetector_swigregister
880 MolCnSymmAxisDetector_swigregister(MolCnSymmAxisDetector)
881 
882 class AlignSymmetric(object):
883  """Proxy of C++ IMP::cnmultifit::AlignSymmetric class"""
884  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
885 
886  def __init__(self, dmap, threshold, cn_symm_deg):
887  """__init__(IMP::cnmultifit::AlignSymmetric self, DensityMap dmap, float threshold, int cn_symm_deg) -> AlignSymmetric"""
888  this = _IMP_cnmultifit.new_AlignSymmetric(dmap, threshold, cn_symm_deg)
889  try:
890  self.this.append(this)
891  except:
892  self.this = this
893 
894  def get_sorted_principal_values(self):
895  """get_sorted_principal_values(AlignSymmetric self) -> IMP::Floats"""
896  return _IMP_cnmultifit.AlignSymmetric_get_sorted_principal_values(self)
897 
898 
899  def score_alignment(self, mhs, max_allowed_diff):
900  """score_alignment(AlignSymmetric self, IMP::atom::Hierarchies mhs, float max_allowed_diff) -> int"""
901  return _IMP_cnmultifit.AlignSymmetric_score_alignment(self, mhs, max_allowed_diff)
902 
903 
904  def get_symm_axis_alignments_from_model_to_density(self, mhs, sample_translation, fine_rotation_sampling=True):
905  """
906  get_symm_axis_alignments_from_model_to_density(AlignSymmetric self, IMP::atom::Hierarchies mhs, bool sample_translation, bool fine_rotation_sampling=True) -> IMP::algebra::Transformation3Ds
907  get_symm_axis_alignments_from_model_to_density(AlignSymmetric self, IMP::atom::Hierarchies mhs, bool sample_translation) -> IMP::algebra::Transformation3Ds
908  """
909  return _IMP_cnmultifit.AlignSymmetric_get_symm_axis_alignments_from_model_to_density(self, mhs, sample_translation, fine_rotation_sampling)
910 
911 
912  def show(self, *args):
913  """
914  show(AlignSymmetric self, _ostream out)
915  show(AlignSymmetric self)
916  """
917  return _IMP_cnmultifit.AlignSymmetric_show(self, *args)
918 
919 
920  def __str__(self):
921  """__str__(AlignSymmetric self) -> std::string"""
922  return _IMP_cnmultifit.AlignSymmetric___str__(self)
923 
924 
925  def __repr__(self):
926  """__repr__(AlignSymmetric self) -> std::string"""
927  return _IMP_cnmultifit.AlignSymmetric___repr__(self)
928 
929  __swig_destroy__ = _IMP_cnmultifit.delete_AlignSymmetric
930  __del__ = lambda self: None
931 AlignSymmetric_swigregister = _IMP_cnmultifit.AlignSymmetric_swigregister
932 AlignSymmetric_swigregister(AlignSymmetric)
933 
934 
935 def generate_cn_transformations(mhs, symm_deg):
936  """generate_cn_transformations(IMP::atom::Hierarchies mhs, int symm_deg) -> IMP::algebra::Transformation3Ds"""
937  return _IMP_cnmultifit.generate_cn_transformations(mhs, symm_deg)
938 
939 def generate_translations_along_symm_axis(mhs, symm_deg):
940  """generate_translations_along_symm_axis(IMP::atom::Hierarchies mhs, int symm_deg) -> IMP::algebra::Transformation3Ds"""
941  return _IMP_cnmultifit.generate_translations_along_symm_axis(mhs, symm_deg)
942 
943 def symmetry_local_fitting(mhs, cn_symm_deg, dn_symm_deg, dmap, num_of_trans_to_consider):
944  """symmetry_local_fitting(IMP::atom::Hierarchies mhs, int cn_symm_deg, int dn_symm_deg, DensityMap dmap, int num_of_trans_to_consider) -> FittingSolutions"""
945  return _IMP_cnmultifit.symmetry_local_fitting(mhs, cn_symm_deg, dn_symm_deg, dmap, num_of_trans_to_consider)
946 
947 def build_cn_dens_assembly(subunit_dens, asmb_dens_header, monomer_t, symm_deg):
948  """build_cn_dens_assembly(DensityMap subunit_dens, DensityHeader asmb_dens_header, Transformation3D monomer_t, int symm_deg) -> DensityMap"""
949  return _IMP_cnmultifit.build_cn_dens_assembly(subunit_dens, asmb_dens_header, monomer_t, symm_deg)
950 
951 def transform_cn_assembly(mhs, monomer_t):
952  """transform_cn_assembly(IMP::atom::Hierarchies mhs, Transformation3D monomer_t)"""
953  return _IMP_cnmultifit.transform_cn_assembly(mhs, monomer_t)
954 
955 def fit_cn_assembly(*args):
956  """
957  fit_cn_assembly(IMP::atom::Hierarchies mhs, int dn_symm_deg, DensityMap dmap, float threshold, AlignSymmetric aligner, bool sample_translation=False, bool fine_rotational_sampling=True) -> FittingSolutions
958  fit_cn_assembly(IMP::atom::Hierarchies mhs, int dn_symm_deg, DensityMap dmap, float threshold, AlignSymmetric aligner, bool sample_translation=False) -> FittingSolutions
959  fit_cn_assembly(IMP::atom::Hierarchies mhs, int dn_symm_deg, DensityMap dmap, float threshold, AlignSymmetric aligner) -> FittingSolutions
960  fit_cn_assembly(DensityMap asmb_map, MolCnSymmAxisDetector symm_mol, DensityMap dmap, CnSymmAxisDetector symm_map, int symm_deg, float threshold) -> FittingSolutions
961  """
962  return _IMP_cnmultifit.fit_cn_assembly(*args)
963 
964 def pca_matching(pca1, pca2, resolution):
965  """pca_matching(PrincipalComponentAnalysis3D pca1, PrincipalComponentAnalysis3D pca2, float resolution) -> bool"""
966  return _IMP_cnmultifit.pca_matching(pca1, pca2, resolution)
967 
968 def cn_symm_score(mhs, center, direction, symm_deg):
969  """cn_symm_score(IMP::atom::Hierarchies mhs, Vector3D center, Vector3D direction, int symm_deg) -> float"""
970  return _IMP_cnmultifit.cn_symm_score(mhs, center, direction, symm_deg)
971 
972 def prune_by_pca(param_fn, sols, dn=1):
973  """
974  prune_by_pca(std::string const & param_fn, IMP::multifit::FittingSolutionRecords const & sols, int dn=1) -> IMP::multifit::FittingSolutionRecords
975  prune_by_pca(std::string const & param_fn, IMP::multifit::FittingSolutionRecords const & sols) -> IMP::multifit::FittingSolutionRecords
976  """
977  return _IMP_cnmultifit.prune_by_pca(param_fn, sols, dn)
978 
979 def calc_transformation_around_axis(a, b, angle_rad):
980  """calc_transformation_around_axis(Vector3D a, Vector3D b, float angle_rad) -> Transformation3D"""
981  return _IMP_cnmultifit.calc_transformation_around_axis(a, b, angle_rad)
982 
983 def get_cn_rmsd(mh1, mh2):
984  """get_cn_rmsd(IMP::atom::Hierarchies mh1, IMP::atom::Hierarchies mh2) -> float"""
985  return _IMP_cnmultifit.get_cn_rmsd(mh1, mh2)
986 
987 def do_all_fitting(*args):
988  """
989  do_all_fitting(std::string const param_filename, std::string const chimera_filename)
990  do_all_fitting(std::string const param_filename)
991  """
992  return _IMP_cnmultifit.do_all_fitting(*args)
993 
994 def get_rmsd_for_models(param_filename, trans_filename, ref_filename, start_model=0, end_model=-1):
995  """
996  get_rmsd_for_models(std::string const param_filename, std::string const trans_filename, std::string const ref_filename, int start_model=0, int end_model=-1) -> IMP::Floats
997  get_rmsd_for_models(std::string const param_filename, std::string const trans_filename, std::string const ref_filename, int start_model=0) -> IMP::Floats
998  get_rmsd_for_models(std::string const param_filename, std::string const trans_filename, std::string const ref_filename) -> IMP::Floats
999  """
1000  return _IMP_cnmultifit.get_rmsd_for_models(param_filename, trans_filename, ref_filename, start_model, end_model)
1001 
1002 _all_commands = ["build", "rmsd", "surface",
1003  "param", "chimera_models"]
1004 
1005 
1006 def get_module_version():
1007  """get_module_version() -> std::string const"""
1008  return _IMP_cnmultifit.get_module_version()
1009 
1010 def get_example_path(fname):
1011  """get_example_path(std::string fname) -> std::string"""
1012  return _IMP_cnmultifit.get_example_path(fname)
1013 
1014 def get_data_path(fname):
1015  """get_data_path(std::string fname) -> std::string"""
1016  return _IMP_cnmultifit.get_data_path(fname)
1017 
1018 from . import _version_check
1019 _version_check.check_version(get_module_version())
1020 __version__ = get_module_version()
1021 
1022 
1023 
Various classes to hold sets of particles.
void do_all_fitting(const std::string param_filename, const std::string chimera_filename="")
High level interface to build cyclic symmetric complexes.
Make CGAL functionality available to IMP.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Composable functors to implement scores via compile-time composition.
Code to compute statistical measures.
float cn_symm_score(atom::Hierarchies mhs, const algebra::Vector3D &center, const algebra::Vector3D &direction, int symm_deg)
scores an input vector as a symmetry axis
Fitting atomic structures into a cryo-electron microscopy density map.
Basic utilities for handling cryo-electron microscopy 3D density maps.
float get_cn_rmsd(atom::Hierarchies mh1, atom::Hierarchies mh2)
Find correspondence between the two rings and calculate rmsd.
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
em::FittingSolutions fit_cn_assembly(atom::Hierarchies mhs, int dn_symm_deg, em::DensityMap *dmap, float threshold, const AlignSymmetric &aligner, bool sample_translation=false, bool fine_rotational_sampling=true)
Fit a symmetric model to its density.
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
Support for the RMF file format for storing hierarchical molecular data and markup.
Divide-and-conquer inferential optimization in discrete space.