Classes for handling CHARMM-style topology. More...

#include "IMP/Object.h"
#include "Hierarchy.h"
#include "Atom.h"
#include <IMP/atom/atom_config.h>
#include <string>
#include <vector>

Include dependency graph for charmm_topology.h:

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Classes
class	IMP::atom::CHARMMAtomTopology
	A single atom in a CHARMM topology. More...

class	IMP::atom::CHARMMBondEndpoint
	The end of a bond, angle, dihedral, improper, or internal coordinate. More...

class	IMP::atom::CHARMMConnection< D >
	A connection (bond, angle, dihedral) between some number of endpoints. More...

class	IMP::atom::CHARMMIdealResidueTopology
	The ideal topology of a single residue. More...

class	IMP::atom::CHARMMInternalCoordinate
	A geometric relationship between four atoms. More...

class	IMP::atom::CHARMMPatch
	A CHARMM patch residue. More...

class	IMP::atom::CHARMMResidueTopology
	The topology of a single residue in a model. More...

class	IMP::atom::CHARMMResidueTopologyBase
	Base class for all CHARMM residue-based topology. More...

Namespaces
	IMP
	Base functionality and abstract base classes for representation, scoring and sampling.

	IMP::atom
	Functionality for loading, creating, manipulating and scoring atomic structures.

Typedefs
typedef CHARMMConnection< 3 >	IMP::atom::CHARMMAngle

typedef IMP::Vector< CHARMMAngle >	IMP::atom::CHARMMAngles

typedef IMP::Vector < CHARMMAtomTopology >	IMP::atom::CHARMMAtomTopologies

typedef CHARMMConnection< 2 >	IMP::atom::CHARMMBond

typedef IMP::Vector < CHARMMBondEndpoint >	IMP::atom::CHARMMBondEndpoints

typedef IMP::Vector< CHARMMBond >	IMP::atom::CHARMMBonds

typedef CHARMMConnection< 4 >	IMP::atom::CHARMMDihedral

typedef IMP::Vector < CHARMMDihedral >	IMP::atom::CHARMMDihedrals

typedef IMP::Vector < IMP::Pointer < CHARMMIdealResidueTopology > >	IMP::atom::CHARMMIdealResidueTopologies

typedef IMP::Vector < IMP::WeakPointer < CHARMMIdealResidueTopology > >	IMP::atom::CHARMMIdealResidueTopologiesTemp

typedef IMP::Vector < CHARMMInternalCoordinate >	IMP::atom::CHARMMInternalCoordinates

typedef IMP::Vector < IMP::Pointer< CHARMMPatch > >	IMP::atom::CHARMMPatches

typedef IMP::Vector < IMP::WeakPointer < CHARMMPatch > >	IMP::atom::CHARMMPatchesTemp

typedef IMP::Vector < IMP::Pointer < CHARMMResidueTopology > >	IMP::atom::CHARMMResidueTopologies

typedef IMP::Vector < IMP::WeakPointer < CHARMMResidueTopology > >	IMP::atom::CHARMMResidueTopologiesTemp

typedef IMP::Vector < IMP::Pointer < CHARMMResidueTopologyBase > >	IMP::atom::CHARMMResidueTopologyBases

typedef IMP::Vector < IMP::WeakPointer < CHARMMResidueTopologyBase > >	IMP::atom::CHARMMResidueTopologyBasesTemp

Detailed Description

Classes for handling CHARMM-style topology.

Definition in file charmm_topology.h.

Classes