secondary_structure_reader.h File Reference

Functions to read PSIPRED/DSSP and encode as SSES. More...

#include "atom_config.h"
#include "Hierarchy.h"
#include "Atom.h"
#include "SecondaryStructureResidue.h"
#include <IMP/file.h>

Include dependency graph for secondary_structure_reader.h:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Namespaces
	IMP
	Base functionality and abstract base classes for representation, scoring and sampling.
	IMP::atom
	Functionality for loading, creating, manipulating and scoring atomic structures.

PSIPRED reading
Reads in PSIPRED results and decorates particles as SecondaryStructureResidues. Currently assuming order of ps matches file.
SecondaryStructureResidues	IMP::atom::read_psipred (TextInput inf, Model *mdl)
SecondaryStructureResidues	IMP::atom::read_psipred (TextInput inf, Particles ps)

Detailed Description

Functions to read PSIPRED/DSSP and encode as SSES.

Copyright 2007-2016 IMP Inventors. All rights reserved.

Definition in file secondary_structure_reader.h.