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IMP Reference Guide  2.6.0
The Integrative Modeling Platform
multifit/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2016 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_multifit', [dirname(__file__)])
23  except ImportError:
24  import _IMP_multifit
25  return _IMP_multifit
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_multifit', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_multifit = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_multifit
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_MULTIFIT_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_MULTIFIT_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_multifit.delete_IMP_MULTIFIT_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
125  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_MULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_MULTIFIT_SwigPyIterator
131  incr(IMP_MULTIFIT_SwigPyIterator self) -> IMP_MULTIFIT_SwigPyIterator
132  """
133  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_MULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_MULTIFIT_SwigPyIterator
139  decr(IMP_MULTIFIT_SwigPyIterator self) -> IMP_MULTIFIT_SwigPyIterator
140  """
141  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> bool"""
151  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_MULTIFIT_SwigPyIterator self) -> IMP_MULTIFIT_SwigPyIterator"""
156  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
161  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
166  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
171  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
176  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> bool"""
181  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> bool"""
186  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
191  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
196  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
201  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator
207  __sub__(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_MULTIFIT_SwigPyIterator_swigregister = _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_swigregister
214 IMP_MULTIFIT_SwigPyIterator_swigregister(IMP_MULTIFIT_SwigPyIterator)
215 
216 
217 _value_types=[]
218 _object_types=[]
219 _raii_types=[]
220 _plural_types=[]
221 
222 
223 _IMP_multifit.IMP_DEBUG_swigconstant(_IMP_multifit)
224 IMP_DEBUG = _IMP_multifit.IMP_DEBUG
225 
226 _IMP_multifit.IMP_RELEASE_swigconstant(_IMP_multifit)
227 IMP_RELEASE = _IMP_multifit.IMP_RELEASE
228 
229 _IMP_multifit.IMP_SILENT_swigconstant(_IMP_multifit)
230 IMP_SILENT = _IMP_multifit.IMP_SILENT
231 
232 _IMP_multifit.IMP_PROGRESS_swigconstant(_IMP_multifit)
233 IMP_PROGRESS = _IMP_multifit.IMP_PROGRESS
234 
235 _IMP_multifit.IMP_TERSE_swigconstant(_IMP_multifit)
236 IMP_TERSE = _IMP_multifit.IMP_TERSE
237 
238 _IMP_multifit.IMP_VERBOSE_swigconstant(_IMP_multifit)
239 IMP_VERBOSE = _IMP_multifit.IMP_VERBOSE
240 
241 _IMP_multifit.IMP_MEMORY_swigconstant(_IMP_multifit)
242 IMP_MEMORY = _IMP_multifit.IMP_MEMORY
243 
244 _IMP_multifit.IMP_NONE_swigconstant(_IMP_multifit)
245 IMP_NONE = _IMP_multifit.IMP_NONE
246 
247 _IMP_multifit.IMP_USAGE_swigconstant(_IMP_multifit)
248 IMP_USAGE = _IMP_multifit.IMP_USAGE
249 
250 _IMP_multifit.IMP_INTERNAL_swigconstant(_IMP_multifit)
251 IMP_INTERNAL = _IMP_multifit.IMP_INTERNAL
252 
253 _IMP_multifit.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_multifit)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_multifit.IMP_KERNEL_HAS_LOG4CXX
255 
256 _IMP_multifit.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_multifit)
257 IMP_COMPILER_HAS_AUTO = _IMP_multifit.IMP_COMPILER_HAS_AUTO
258 
259 _IMP_multifit.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_multifit)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_multifit.IMP_COMPILER_HAS_DEBUG_VECTOR
261 
262 _IMP_multifit.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_multifit)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_multifit.IMP_COMPILER_HAS_UNIQUE_PTR
264 
265 _IMP_multifit.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_multifit.IMP_KERNEL_HAS_BOOST_RANDOM
267 
268 _IMP_multifit.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_multifit)
269 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_multifit.IMP_KERNEL_HAS_GPERFTOOLS
270 
271 _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_multifit)
272 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
273 
274 _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_multifit)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
276 
277 _IMP_multifit.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_multifit)
278 IMPKERNEL_SHOW_WARNINGS = _IMP_multifit.IMPKERNEL_SHOW_WARNINGS
279 
280 import sys
281 class _DirectorObjects(object):
282  """@internal Simple class to keep references to director objects
283  to prevent premature deletion."""
284  def __init__(self):
285  self._objects = []
286  def register(self, obj):
287  """Take a reference to a director object; will only work for
288  refcounted C++ classes"""
289  if hasattr(obj, 'get_ref_count'):
290  self._objects.append(obj)
291  def cleanup(self):
292  """Only drop our reference and allow cleanup by Python if no other
293  Python references exist (we hold 3 references: one in self._objects,
294  one in x, and one in the argument list for getrefcount) *and* no
295  other C++ references exist (the Python object always holds one)"""
296  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
297  or x.get_ref_count() > 1]
298 # Do in two steps so the references are kept until the end of the
299 # function (deleting references may trigger a fresh call to this method)
300  self._objects = objs
301  def get_object_count(self):
302  """Get number of director objects (useful for testing only)"""
303  return len(self._objects)
304 _director_objects = _DirectorObjects()
305 
306 class _ostream(object):
307  """Proxy of C++ std::ostream class"""
308  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
309 
310  def __init__(self, *args, **kwargs):
311  raise AttributeError("No constructor defined")
312  __repr__ = _swig_repr
313 
314  def write(self, osa_buf):
315  """write(_ostream self, char const * osa_buf)"""
316  return _IMP_multifit._ostream_write(self, osa_buf)
317 
318 _ostream_swigregister = _IMP_multifit._ostream_swigregister
319 _ostream_swigregister(_ostream)
320 
321 
322 _IMP_multifit.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_multifit)
323 IMP_COMPILER_HAS_OVERRIDE = _IMP_multifit.IMP_COMPILER_HAS_OVERRIDE
324 
325 _IMP_multifit.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_multifit)
326 IMP_COMPILER_HAS_FINAL = _IMP_multifit.IMP_COMPILER_HAS_FINAL
327 
328 _IMP_multifit.IMP_HAS_NOEXCEPT_swigconstant(_IMP_multifit)
329 IMP_HAS_NOEXCEPT = _IMP_multifit.IMP_HAS_NOEXCEPT
330 import IMP
331 
332 _IMP_multifit.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
333 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_CGAL_HAS_BOOST_FILESYSTEM
334 
335 _IMP_multifit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
336 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
337 
338 _IMP_multifit.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
339 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_multifit.IMP_CGAL_HAS_BOOST_RANDOM
340 
341 _IMP_multifit.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
342 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_CGAL_HAS_BOOST_SYSTEM
343 
344 _IMP_multifit.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_multifit)
345 IMPCGAL_SHOW_WARNINGS = _IMP_multifit.IMPCGAL_SHOW_WARNINGS
346 import IMP.cgal
347 
348 _IMP_multifit.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
349 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_multifit.IMP_ALGEBRA_HAS_IMP_CGAL
350 
351 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
352 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
353 
354 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
355 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
356 
357 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
358 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_RANDOM
359 
360 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
361 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_SYSTEM
362 
363 _IMP_multifit.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_multifit)
364 IMP_ALGEBRA_HAS_CGAL = _IMP_multifit.IMP_ALGEBRA_HAS_CGAL
365 
366 _IMP_multifit.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_multifit)
367 IMP_ALGEBRA_HAS_ANN = _IMP_multifit.IMP_ALGEBRA_HAS_ANN
368 
369 _IMP_multifit.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_multifit)
370 IMPALGEBRA_SHOW_WARNINGS = _IMP_multifit.IMPALGEBRA_SHOW_WARNINGS
371 import IMP.algebra
372 
373 _IMP_multifit.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
374 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_multifit.IMP_DISPLAY_HAS_IMP_CGAL
375 
376 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
377 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
378 
379 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
380 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
381 
382 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
383 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_RANDOM
384 
385 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
386 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_SYSTEM
387 
388 _IMP_multifit.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_multifit)
389 IMP_DISPLAY_HAS_CGAL = _IMP_multifit.IMP_DISPLAY_HAS_CGAL
390 
391 _IMP_multifit.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_multifit)
392 IMPDISPLAY_SHOW_WARNINGS = _IMP_multifit.IMPDISPLAY_SHOW_WARNINGS
393 import IMP.display
394 
395 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
396 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
397 
398 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
399 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
400 
401 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
402 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
403 
404 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
405 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
406 
407 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
408 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
409 
410 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_multifit)
411 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_CGAL
412 
413 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_multifit)
414 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_HDF5
415 
416 _IMP_multifit.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_multifit)
417 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_multifit.IMPSCOREFUNCTOR_SHOW_WARNINGS
418 import IMP.score_functor
419 
420 _IMP_multifit.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
421 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_multifit.IMP_STATISTICS_HAS_IMP_CGAL
422 
423 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
424 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
425 
426 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
427 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
428 
429 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
430 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_RANDOM
431 
432 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
433 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_SYSTEM
434 
435 _IMP_multifit.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_multifit)
436 IMP_STATISTICS_HAS_CGAL = _IMP_multifit.IMP_STATISTICS_HAS_CGAL
437 
438 _IMP_multifit.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_multifit)
439 IMPSTATISTICS_SHOW_WARNINGS = _IMP_multifit.IMPSTATISTICS_SHOW_WARNINGS
440 import IMP.statistics
441 
442 _IMP_multifit.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
443 IMP_CORE_HAS_IMP_CGAL = _IMP_multifit.IMP_CORE_HAS_IMP_CGAL
444 
445 _IMP_multifit.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
446 IMP_CORE_HAS_IMP_KERNEL = _IMP_multifit.IMP_CORE_HAS_IMP_KERNEL
447 
448 _IMP_multifit.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
449 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_CORE_HAS_BOOST_FILESYSTEM
450 
451 _IMP_multifit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
452 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
453 
454 _IMP_multifit.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
455 IMP_CORE_HAS_BOOST_RANDOM = _IMP_multifit.IMP_CORE_HAS_BOOST_RANDOM
456 
457 _IMP_multifit.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
458 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_CORE_HAS_BOOST_SYSTEM
459 
460 _IMP_multifit.IMP_CORE_HAS_CGAL_swigconstant(_IMP_multifit)
461 IMP_CORE_HAS_CGAL = _IMP_multifit.IMP_CORE_HAS_CGAL
462 
463 _IMP_multifit.IMP_CORE_HAS_HDF5_swigconstant(_IMP_multifit)
464 IMP_CORE_HAS_HDF5 = _IMP_multifit.IMP_CORE_HAS_HDF5
465 
466 _IMP_multifit.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_multifit)
467 IMPCORE_SHOW_WARNINGS = _IMP_multifit.IMPCORE_SHOW_WARNINGS
468 import IMP.core
469 
470 _IMP_multifit.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_multifit)
471 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_multifit.IMP_CONTAINER_HAS_IMP_ALGEBRA
472 
473 _IMP_multifit.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
474 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_multifit.IMP_CONTAINER_HAS_IMP_CGAL
475 
476 _IMP_multifit.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
477 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_multifit.IMP_CONTAINER_HAS_IMP_DISPLAY
478 
479 _IMP_multifit.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
480 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_multifit.IMP_CONTAINER_HAS_IMP_KERNEL
481 
482 _IMP_multifit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
483 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
484 
485 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
486 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
487 
488 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
489 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
490 
491 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
492 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_RANDOM
493 
494 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
495 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_SYSTEM
496 
497 _IMP_multifit.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_multifit)
498 IMP_CONTAINER_HAS_CGAL = _IMP_multifit.IMP_CONTAINER_HAS_CGAL
499 
500 _IMP_multifit.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_multifit)
501 IMP_CONTAINER_HAS_HDF5 = _IMP_multifit.IMP_CONTAINER_HAS_HDF5
502 
503 _IMP_multifit.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_multifit)
504 IMPCONTAINER_SHOW_WARNINGS = _IMP_multifit.IMPCONTAINER_SHOW_WARNINGS
505 import IMP.container
506 
507 _IMP_multifit.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
508 IMP_ATOM_HAS_IMP_CGAL = _IMP_multifit.IMP_ATOM_HAS_IMP_CGAL
509 
510 _IMP_multifit.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
511 IMP_ATOM_HAS_IMP_KERNEL = _IMP_multifit.IMP_ATOM_HAS_IMP_KERNEL
512 
513 _IMP_multifit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
514 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
515 
516 _IMP_multifit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
517 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
518 
519 _IMP_multifit.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
520 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_multifit.IMP_ATOM_HAS_BOOST_RANDOM
521 
522 _IMP_multifit.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
523 IMP_ATOM_HAS_BOOST_REGEX = _IMP_multifit.IMP_ATOM_HAS_BOOST_REGEX
524 
525 _IMP_multifit.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
526 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_ATOM_HAS_BOOST_SYSTEM
527 
528 _IMP_multifit.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_multifit)
529 IMP_ATOM_HAS_CGAL = _IMP_multifit.IMP_ATOM_HAS_CGAL
530 
531 _IMP_multifit.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_multifit)
532 IMP_ATOM_HAS_HDF5 = _IMP_multifit.IMP_ATOM_HAS_HDF5
533 
534 _IMP_multifit.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_multifit)
535 IMPATOM_SHOW_WARNINGS = _IMP_multifit.IMPATOM_SHOW_WARNINGS
536 
537 _IMP_multifit.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_multifit)
538 IMP_ATOM_TYPE_INDEX = _IMP_multifit.IMP_ATOM_TYPE_INDEX
539 
540 _IMP_multifit.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_multifit)
541 IMP_RESIDUE_TYPE_INDEX = _IMP_multifit.IMP_RESIDUE_TYPE_INDEX
542 
543 _IMP_multifit.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_multifit)
544 IMP_HIERARCHY_TYPE_INDEX = _IMP_multifit.IMP_HIERARCHY_TYPE_INDEX
545 import IMP.atom
546 
547 _IMP_multifit.IMP_EM_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
548 IMP_EM_HAS_IMP_CGAL = _IMP_multifit.IMP_EM_HAS_IMP_CGAL
549 
550 _IMP_multifit.IMP_EM_HAS_IMP_CONTAINER_swigconstant(_IMP_multifit)
551 IMP_EM_HAS_IMP_CONTAINER = _IMP_multifit.IMP_EM_HAS_IMP_CONTAINER
552 
553 _IMP_multifit.IMP_EM_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
554 IMP_EM_HAS_IMP_DISPLAY = _IMP_multifit.IMP_EM_HAS_IMP_DISPLAY
555 
556 _IMP_multifit.IMP_EM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
557 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_EM_HAS_IMP_SCORE_FUNCTOR
558 
559 _IMP_multifit.IMP_EM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
560 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_EM_HAS_BOOST_FILESYSTEM
561 
562 _IMP_multifit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
563 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
564 
565 _IMP_multifit.IMP_EM_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
566 IMP_EM_HAS_BOOST_RANDOM = _IMP_multifit.IMP_EM_HAS_BOOST_RANDOM
567 
568 _IMP_multifit.IMP_EM_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
569 IMP_EM_HAS_BOOST_REGEX = _IMP_multifit.IMP_EM_HAS_BOOST_REGEX
570 
571 _IMP_multifit.IMP_EM_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
572 IMP_EM_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_EM_HAS_BOOST_SYSTEM
573 
574 _IMP_multifit.IMP_EM_HAS_CGAL_swigconstant(_IMP_multifit)
575 IMP_EM_HAS_CGAL = _IMP_multifit.IMP_EM_HAS_CGAL
576 
577 _IMP_multifit.IMP_EM_HAS_HDF5_swigconstant(_IMP_multifit)
578 IMP_EM_HAS_HDF5 = _IMP_multifit.IMP_EM_HAS_HDF5
579 
580 _IMP_multifit.IMPEM_SHOW_WARNINGS_swigconstant(_IMP_multifit)
581 IMPEM_SHOW_WARNINGS = _IMP_multifit.IMPEM_SHOW_WARNINGS
582 import IMP.em
583 
584 _IMP_multifit.IMP_RMF_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
585 IMP_RMF_HAS_IMP_CGAL = _IMP_multifit.IMP_RMF_HAS_IMP_CGAL
586 
587 _IMP_multifit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
588 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
589 
590 _IMP_multifit.IMP_RMF_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
591 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_RMF_HAS_BOOST_FILESYSTEM
592 
593 _IMP_multifit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
594 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
595 
596 _IMP_multifit.IMP_RMF_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
597 IMP_RMF_HAS_BOOST_RANDOM = _IMP_multifit.IMP_RMF_HAS_BOOST_RANDOM
598 
599 _IMP_multifit.IMP_RMF_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
600 IMP_RMF_HAS_BOOST_REGEX = _IMP_multifit.IMP_RMF_HAS_BOOST_REGEX
601 
602 _IMP_multifit.IMP_RMF_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
603 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_RMF_HAS_BOOST_SYSTEM
604 
605 _IMP_multifit.IMP_RMF_HAS_CGAL_swigconstant(_IMP_multifit)
606 IMP_RMF_HAS_CGAL = _IMP_multifit.IMP_RMF_HAS_CGAL
607 
608 _IMP_multifit.IMP_RMF_HAS_HDF5_swigconstant(_IMP_multifit)
609 IMP_RMF_HAS_HDF5 = _IMP_multifit.IMP_RMF_HAS_HDF5
610 
611 _IMP_multifit.IMPRMF_SHOW_WARNINGS_swigconstant(_IMP_multifit)
612 IMPRMF_SHOW_WARNINGS = _IMP_multifit.IMPRMF_SHOW_WARNINGS
613 import IMP.rmf
614 import RMF
615 
616 _IMP_multifit.IMP_DOMINO_HAS_IMP_ATOM_swigconstant(_IMP_multifit)
617 IMP_DOMINO_HAS_IMP_ATOM = _IMP_multifit.IMP_DOMINO_HAS_IMP_ATOM
618 
619 _IMP_multifit.IMP_DOMINO_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
620 IMP_DOMINO_HAS_IMP_CGAL = _IMP_multifit.IMP_DOMINO_HAS_IMP_CGAL
621 
622 _IMP_multifit.IMP_DOMINO_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
623 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_multifit.IMP_DOMINO_HAS_IMP_KERNEL
624 
625 _IMP_multifit.IMP_DOMINO_HAS_IMP_RMF_swigconstant(_IMP_multifit)
626 IMP_DOMINO_HAS_IMP_RMF = _IMP_multifit.IMP_DOMINO_HAS_IMP_RMF
627 
628 _IMP_multifit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
629 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
630 
631 _IMP_multifit.IMP_DOMINO_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
632 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_DOMINO_HAS_BOOST_FILESYSTEM
633 
634 _IMP_multifit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
635 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
636 
637 _IMP_multifit.IMP_DOMINO_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
638 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_multifit.IMP_DOMINO_HAS_BOOST_RANDOM
639 
640 _IMP_multifit.IMP_DOMINO_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
641 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_multifit.IMP_DOMINO_HAS_BOOST_REGEX
642 
643 _IMP_multifit.IMP_DOMINO_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
644 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_DOMINO_HAS_BOOST_SYSTEM
645 
646 _IMP_multifit.IMP_DOMINO_HAS_CGAL_swigconstant(_IMP_multifit)
647 IMP_DOMINO_HAS_CGAL = _IMP_multifit.IMP_DOMINO_HAS_CGAL
648 
649 _IMP_multifit.IMP_DOMINO_HAS_HDF5_swigconstant(_IMP_multifit)
650 IMP_DOMINO_HAS_HDF5 = _IMP_multifit.IMP_DOMINO_HAS_HDF5
651 
652 _IMP_multifit.IMP_DOMINO_HAS_RMF_swigconstant(_IMP_multifit)
653 IMP_DOMINO_HAS_RMF = _IMP_multifit.IMP_DOMINO_HAS_RMF
654 
655 _IMP_multifit.IMPDOMINO_SHOW_WARNINGS_swigconstant(_IMP_multifit)
656 IMPDOMINO_SHOW_WARNINGS = _IMP_multifit.IMPDOMINO_SHOW_WARNINGS
657 import RMF_HDF5
658 import IMP.domino
659 
660 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
661 IMP_MULTIFIT_HAS_IMP_CGAL = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CGAL
662 
663 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CONTAINER_swigconstant(_IMP_multifit)
664 IMP_MULTIFIT_HAS_IMP_CONTAINER = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CONTAINER
665 
666 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
667 IMP_MULTIFIT_HAS_IMP_DISPLAY = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_DISPLAY
668 
669 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
670 IMP_MULTIFIT_HAS_IMP_KERNEL = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_KERNEL
671 
672 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_RMF_swigconstant(_IMP_multifit)
673 IMP_MULTIFIT_HAS_IMP_RMF = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_RMF
674 
675 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
676 IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR
677 
678 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_GRAPH_swigconstant(_IMP_multifit)
679 IMP_MULTIFIT_HAS_BOOST_GRAPH = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_GRAPH
680 
681 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
682 IMP_MULTIFIT_HAS_BOOST_RANDOM = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_RANDOM
683 
684 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
685 IMP_MULTIFIT_HAS_BOOST_REGEX = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_REGEX
686 
687 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
688 IMP_MULTIFIT_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_SYSTEM
689 
690 _IMP_multifit.IMP_MULTIFIT_HAS_CGAL_swigconstant(_IMP_multifit)
691 IMP_MULTIFIT_HAS_CGAL = _IMP_multifit.IMP_MULTIFIT_HAS_CGAL
692 
693 _IMP_multifit.IMP_MULTIFIT_HAS_HDF5_swigconstant(_IMP_multifit)
694 IMP_MULTIFIT_HAS_HDF5 = _IMP_multifit.IMP_MULTIFIT_HAS_HDF5
695 
696 _IMP_multifit.IMP_MULTIFIT_HAS_RMF_swigconstant(_IMP_multifit)
697 IMP_MULTIFIT_HAS_RMF = _IMP_multifit.IMP_MULTIFIT_HAS_RMF
698 
699 _IMP_multifit.IMPMULTIFIT_SHOW_WARNINGS_swigconstant(_IMP_multifit)
700 IMPMULTIFIT_SHOW_WARNINGS = _IMP_multifit.IMPMULTIFIT_SHOW_WARNINGS
701 
702 _object_types.append("RadiusOfGyrationRestraint")
703 
704 
705 def _object_cast_to_RadiusOfGyrationRestraint(o):
706  """_object_cast_to_RadiusOfGyrationRestraint(Object o) -> RadiusOfGyrationRestraint"""
707  return _IMP_multifit._object_cast_to_RadiusOfGyrationRestraint(o)
708 
709 _object_types.append("ComponentHeader")
710 
711 
712 def _object_cast_to_ComponentHeader(o):
713  """_object_cast_to_ComponentHeader(Object o) -> ComponentHeader"""
714  return _IMP_multifit._object_cast_to_ComponentHeader(o)
715 
716 _object_types.append("AssemblyHeader")
717 
718 
719 def _object_cast_to_AssemblyHeader(o):
720  """_object_cast_to_AssemblyHeader(Object o) -> AssemblyHeader"""
721  return _IMP_multifit._object_cast_to_AssemblyHeader(o)
722 
723 _object_types.append("SettingsData")
724 
725 
726 def _object_cast_to_SettingsData(o):
727  """_object_cast_to_SettingsData(Object o) -> SettingsData"""
728  return _IMP_multifit._object_cast_to_SettingsData(o)
729 
730 _object_types.append("WeightedExcludedVolumeRestraint")
731 
732 
733 def _object_cast_to_WeightedExcludedVolumeRestraint(o):
734  """_object_cast_to_WeightedExcludedVolumeRestraint(Object o) -> WeightedExcludedVolumeRestraint"""
735  return _IMP_multifit._object_cast_to_WeightedExcludedVolumeRestraint(o)
736 
737 _object_types.append("ComplementarityRestraint")
738 
739 
740 def _object_cast_to_ComplementarityRestraint(o):
741  """_object_cast_to_ComplementarityRestraint(Object o) -> ComplementarityRestraint"""
742  return _IMP_multifit._object_cast_to_ComplementarityRestraint(o)
743 
744 ProteinRecordDataList=list
745 _plural_types.append("ProteinRecordDataList")
746 _value_types.append("ProteinRecordData")
747 
748 
749 FittingSolutionRecords=list
750 _plural_types.append("FittingSolutionRecords")
751 _value_types.append("FittingSolutionRecord")
752 
753 
754 AnchorsDataList=list
755 _plural_types.append("AnchorsDataList")
756 _value_types.append("AnchorsData")
757 
758 
759 DominoParamsList=list
760 _plural_types.append("DominoParamsList")
761 _value_types.append("DominoParams")
762 
763 
764 ComplementarityParamsList=list
765 _plural_types.append("ComplementarityParamsList")
766 _value_types.append("ComplementarityParams")
767 
768 
769 XlinkParamsList=list
770 _plural_types.append("XlinkParamsList")
771 _value_types.append("XlinkParams")
772 
773 
774 ConnectivityParamsList=list
775 _plural_types.append("ConnectivityParamsList")
776 _value_types.append("ConnectivityParams")
777 
778 
779 FragmentsParamsList=list
780 _plural_types.append("FragmentsParamsList")
781 _value_types.append("FragmentsParams")
782 
783 
784 RogParamsList=list
785 _plural_types.append("RogParamsList")
786 _value_types.append("RogParams")
787 
788 
789 EVParamsList=list
790 _plural_types.append("EVParamsList")
791 _value_types.append("EVParams")
792 
793 
794 FiltersParamsList=list
795 _plural_types.append("FiltersParamsList")
796 _value_types.append("FiltersParams")
797 
798 
799 AlignmentParamsList=list
800 _plural_types.append("AlignmentParamsList")
801 _value_types.append("AlignmentParams")
802 
803 
804 FittingParamsList=list
805 _plural_types.append("FittingParamsList")
806 _value_types.append("FittingParams")
807 
808 
809 ProteinsAnchorsSamplingSpaces=list
810 _plural_types.append("ProteinsAnchorsSamplingSpaces")
811 _value_types.append("ProteinsAnchorsSamplingSpace")
812 
813 
814 _object_types.append("ProteomicsData")
815 
816 
817 def _object_cast_to_ProteomicsData(o):
818  """_object_cast_to_ProteomicsData(Object o) -> ProteomicsData"""
819  return _IMP_multifit._object_cast_to_ProteomicsData(o)
820 
821 _object_types.append("FFTFitting")
822 
823 
824 def _object_cast_to_FFTFitting(o):
825  """_object_cast_to_FFTFitting(Object o) -> FFTFitting"""
826  return _IMP_multifit._object_cast_to_FFTFitting(o)
827 
828 _object_types.append("FFTFittingOutput")
829 
830 
831 def _object_cast_to_FFTFittingOutput(o):
832  """_object_cast_to_FFTFittingOutput(Object o) -> FFTFittingOutput"""
833  return _IMP_multifit._object_cast_to_FFTFittingOutput(o)
834 
835 _object_types.append("ProbabilisticAnchorGraph")
836 
837 
838 def _object_cast_to_ProbabilisticAnchorGraph(o):
839  """_object_cast_to_ProbabilisticAnchorGraph(Object o) -> ProbabilisticAnchorGraph"""
840  return _IMP_multifit._object_cast_to_ProbabilisticAnchorGraph(o)
841 
842 _object_types.append("Ensemble")
843 
844 
845 def _object_cast_to_Ensemble(o):
846  """_object_cast_to_Ensemble(Object o) -> Ensemble"""
847  return _IMP_multifit._object_cast_to_Ensemble(o)
848 
849 _object_types.append("ProteomicsEMAlignmentAtomic")
850 
851 
852 def _object_cast_to_ProteomicsEMAlignmentAtomic(o):
853  """_object_cast_to_ProteomicsEMAlignmentAtomic(Object o) -> ProteomicsEMAlignmentAtomic"""
854  return _IMP_multifit._object_cast_to_ProteomicsEMAlignmentAtomic(o)
855 
856 def add_surface_index(*args):
857  """
858  add_surface_index(Hierarchy mhd, IMP::Float apix, FloatKey shell_key, FloatKey radius_key, FloatKey weight_key)
859  add_surface_index(Hierarchy mhd, IMP::Float apix, FloatKey shell_key, FloatKey radius_key)
860  add_surface_index(Hierarchy mhd, IMP::Float apix, FloatKey shell_key)
861  add_surface_index(Hierarchy mhd, IMP::Float apix)
862  """
863  return _IMP_multifit.add_surface_index(*args)
864 
865 def create_weighted_excluded_volume_restraint(*args):
866  """
867  create_weighted_excluded_volume_restraint(RigidBody rb1, RigidBody rb2, FloatKey shell_key) -> Restraint
868  create_weighted_excluded_volume_restraint(RigidBody rb1, RigidBody rb2) -> Restraint
869  """
870  return _IMP_multifit.create_weighted_excluded_volume_restraint(*args)
871 class FittingSolutionRecord(object):
872  """Proxy of C++ IMP::multifit::FittingSolutionRecord class"""
873  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
874 
875  def __init__(self):
876  """__init__(IMP::multifit::FittingSolutionRecord self) -> FittingSolutionRecord"""
877  this = _IMP_multifit.new_FittingSolutionRecord()
878  try:
879  self.this.append(this)
880  except:
881  self.this = this
882 
883  def get_index(self):
884  """get_index(FittingSolutionRecord self) -> unsigned int"""
885  return _IMP_multifit.FittingSolutionRecord_get_index(self)
886 
887 
888  def set_index(self, new_ind):
889  """set_index(FittingSolutionRecord self, unsigned int new_ind)"""
890  return _IMP_multifit.FittingSolutionRecord_set_index(self, new_ind)
891 
892 
893  def get_solution_filename(self):
894  """get_solution_filename(FittingSolutionRecord self) -> std::string"""
895  return _IMP_multifit.FittingSolutionRecord_get_solution_filename(self)
896 
897 
898  def set_solution_filename(self, sol_fn):
899  """set_solution_filename(FittingSolutionRecord self, std::string sol_fn)"""
900  return _IMP_multifit.FittingSolutionRecord_set_solution_filename(self, sol_fn)
901 
902 
903  def get_fit_transformation(self):
904  """get_fit_transformation(FittingSolutionRecord self) -> Transformation3D"""
905  return _IMP_multifit.FittingSolutionRecord_get_fit_transformation(self)
906 
907 
908  def set_fit_transformation(self, t):
909  """set_fit_transformation(FittingSolutionRecord self, Transformation3D t)"""
910  return _IMP_multifit.FittingSolutionRecord_set_fit_transformation(self, t)
911 
912 
913  def get_match_size(self):
914  """get_match_size(FittingSolutionRecord self) -> unsigned int"""
915  return _IMP_multifit.FittingSolutionRecord_get_match_size(self)
916 
917 
918  def set_match_size(self, match_size):
919  """set_match_size(FittingSolutionRecord self, unsigned int match_size)"""
920  return _IMP_multifit.FittingSolutionRecord_set_match_size(self, match_size)
921 
922 
923  def get_match_average_distance(self):
924  """get_match_average_distance(FittingSolutionRecord self) -> IMP::Float"""
925  return _IMP_multifit.FittingSolutionRecord_get_match_average_distance(self)
926 
927 
928  def set_match_average_distance(self, match_avg_dist):
929  """set_match_average_distance(FittingSolutionRecord self, IMP::Float match_avg_dist)"""
930  return _IMP_multifit.FittingSolutionRecord_set_match_average_distance(self, match_avg_dist)
931 
932 
933  def get_fitting_score(self):
934  """get_fitting_score(FittingSolutionRecord self) -> IMP::Float"""
935  return _IMP_multifit.FittingSolutionRecord_get_fitting_score(self)
936 
937 
938  def set_fitting_score(self, fit_score):
939  """set_fitting_score(FittingSolutionRecord self, IMP::Float fit_score)"""
940  return _IMP_multifit.FittingSolutionRecord_set_fitting_score(self, fit_score)
941 
942 
943  def get_rmsd_to_reference(self):
944  """get_rmsd_to_reference(FittingSolutionRecord self) -> IMP::Float"""
945  return _IMP_multifit.FittingSolutionRecord_get_rmsd_to_reference(self)
946 
947 
948  def set_rmsd_to_reference(self, rmsd_to_ref):
949  """set_rmsd_to_reference(FittingSolutionRecord self, IMP::Float rmsd_to_ref)"""
950  return _IMP_multifit.FittingSolutionRecord_set_rmsd_to_reference(self, rmsd_to_ref)
951 
952 
953  def get_dock_transformation(self):
954  """get_dock_transformation(FittingSolutionRecord self) -> Transformation3D"""
955  return _IMP_multifit.FittingSolutionRecord_get_dock_transformation(self)
956 
957 
958  def set_dock_transformation(self, t):
959  """set_dock_transformation(FittingSolutionRecord self, Transformation3D t)"""
960  return _IMP_multifit.FittingSolutionRecord_set_dock_transformation(self, t)
961 
962 
963  def get_envelope_penetration_score(self):
964  """get_envelope_penetration_score(FittingSolutionRecord self) -> IMP::Float"""
965  return _IMP_multifit.FittingSolutionRecord_get_envelope_penetration_score(self)
966 
967 
968  def set_envelope_penetration_score(self, s):
969  """set_envelope_penetration_score(FittingSolutionRecord self, IMP::Float s)"""
970  return _IMP_multifit.FittingSolutionRecord_set_envelope_penetration_score(self, s)
971 
972 
973  def show(self, *args):
974  """
975  show(FittingSolutionRecord self, _ostream out)
976  show(FittingSolutionRecord self)
977  """
978  return _IMP_multifit.FittingSolutionRecord_show(self, *args)
979 
980 
981  def get_record_header():
982  """get_record_header() -> std::string"""
983  return _IMP_multifit.FittingSolutionRecord_get_record_header()
984 
985  get_record_header = staticmethod(get_record_header)
986 
987  def __str__(self):
988  """__str__(FittingSolutionRecord self) -> std::string"""
989  return _IMP_multifit.FittingSolutionRecord___str__(self)
990 
991 
992  def __repr__(self):
993  """__repr__(FittingSolutionRecord self) -> std::string"""
994  return _IMP_multifit.FittingSolutionRecord___repr__(self)
995 
996  __swig_destroy__ = _IMP_multifit.delete_FittingSolutionRecord
997  __del__ = lambda self: None
998 FittingSolutionRecord_swigregister = _IMP_multifit.FittingSolutionRecord_swigregister
999 FittingSolutionRecord_swigregister(FittingSolutionRecord)
1000 
1001 def FittingSolutionRecord_get_record_header():
1002  """FittingSolutionRecord_get_record_header() -> std::string"""
1003  return _IMP_multifit.FittingSolutionRecord_get_record_header()
1004 
1005 
1006 def pca_based_rigid_fitting(*args):
1007  """
1008  pca_based_rigid_fitting(RigidBody rb, Refiner rb_refiner, DensityMap em_map, IMP::Float threshold, FloatKey wei_key, PrincipalComponentAnalysis3D dens_pca_input) -> FittingSolutions
1009  pca_based_rigid_fitting(RigidBody rb, Refiner rb_refiner, DensityMap em_map, IMP::Float threshold, FloatKey wei_key) -> FittingSolutions
1010  pca_based_rigid_fitting(RigidBody rb, Refiner rb_refiner, DensityMap em_map, IMP::Float threshold) -> FittingSolutions
1011  pca_based_rigid_fitting(IMP::ParticlesTemp ps, DensityMap em_map, IMP::Float threshold, FloatKey wei_key, PrincipalComponentAnalysis3D dens_pca_input) -> FittingSolutions
1012  pca_based_rigid_fitting(IMP::ParticlesTemp ps, DensityMap em_map, IMP::Float threshold, FloatKey wei_key) -> FittingSolutions
1013  pca_based_rigid_fitting(IMP::ParticlesTemp ps, DensityMap em_map, IMP::Float threshold) -> FittingSolutions
1014  """
1015  return _IMP_multifit.pca_based_rigid_fitting(*args)
1016 
1017 def write_markers(pca, out):
1018  """write_markers(PrincipalComponentAnalysis3D pca, _ostream out)"""
1019  return _IMP_multifit.write_markers(pca, out)
1020 class ComponentHeader(IMP.Object):
1021  """Proxy of C++ IMP::multifit::ComponentHeader class"""
1022  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1023 
1024  def __init__(self):
1025  """__init__(IMP::multifit::ComponentHeader self) -> ComponentHeader"""
1026  this = _IMP_multifit.new_ComponentHeader()
1027  try:
1028  self.this.append(this)
1029  except:
1030  self.this = this
1031 
1032  def set_name(self, name):
1033  """set_name(ComponentHeader self, std::string const & name)"""
1034  return _IMP_multifit.ComponentHeader_set_name(self, name)
1035 
1036 
1037  def get_name(self):
1038  """get_name(ComponentHeader self) -> std::string"""
1039  return _IMP_multifit.ComponentHeader_get_name(self)
1040 
1041 
1042  def get_filename(self):
1043  """get_filename(ComponentHeader self) -> std::string"""
1044  return _IMP_multifit.ComponentHeader_get_filename(self)
1045 
1046 
1047  def set_filename(self, filename):
1048  """set_filename(ComponentHeader self, std::string const & filename)"""
1049  return _IMP_multifit.ComponentHeader_set_filename(self, filename)
1050 
1051 
1052  def get_surface_fn(self):
1053  """get_surface_fn(ComponentHeader self) -> std::string"""
1054  return _IMP_multifit.ComponentHeader_get_surface_fn(self)
1055 
1056 
1057  def set_surface_fn(self, fn):
1058  """set_surface_fn(ComponentHeader self, std::string const & fn)"""
1059  return _IMP_multifit.ComponentHeader_set_surface_fn(self, fn)
1060 
1061 
1062  def set_txt_ap_fn(self, pdb_ap_fn):
1063  """set_txt_ap_fn(ComponentHeader self, std::string const & pdb_ap_fn)"""
1064  return _IMP_multifit.ComponentHeader_set_txt_ap_fn(self, pdb_ap_fn)
1065 
1066 
1067  def get_txt_ap_fn(self):
1068  """get_txt_ap_fn(ComponentHeader self) -> std::string"""
1069  return _IMP_multifit.ComponentHeader_get_txt_ap_fn(self)
1070 
1071 
1072  def set_txt_fine_ap_fn(self, pdb_ap_fn):
1073  """set_txt_fine_ap_fn(ComponentHeader self, std::string const & pdb_ap_fn)"""
1074  return _IMP_multifit.ComponentHeader_set_txt_fine_ap_fn(self, pdb_ap_fn)
1075 
1076 
1077  def get_txt_fine_ap_fn(self):
1078  """get_txt_fine_ap_fn(ComponentHeader self) -> std::string"""
1079  return _IMP_multifit.ComponentHeader_get_txt_fine_ap_fn(self)
1080 
1081 
1082  def set_num_ap(self, num_ap):
1083  """set_num_ap(ComponentHeader self, int num_ap)"""
1084  return _IMP_multifit.ComponentHeader_set_num_ap(self, num_ap)
1085 
1086 
1087  def get_num_ap(self):
1088  """get_num_ap(ComponentHeader self) -> int"""
1089  return _IMP_multifit.ComponentHeader_get_num_ap(self)
1090 
1091 
1092  def set_num_fine_ap(self, num_ap):
1093  """set_num_fine_ap(ComponentHeader self, int num_ap)"""
1094  return _IMP_multifit.ComponentHeader_set_num_fine_ap(self, num_ap)
1095 
1096 
1097  def get_num_fine_ap(self):
1098  """get_num_fine_ap(ComponentHeader self) -> int"""
1099  return _IMP_multifit.ComponentHeader_get_num_fine_ap(self)
1100 
1101 
1102  def set_transformations_fn(self, transformations_fn):
1103  """set_transformations_fn(ComponentHeader self, std::string transformations_fn)"""
1104  return _IMP_multifit.ComponentHeader_set_transformations_fn(self, transformations_fn)
1105 
1106 
1107  def get_transformations_fn(self):
1108  """get_transformations_fn(ComponentHeader self) -> std::string"""
1109  return _IMP_multifit.ComponentHeader_get_transformations_fn(self)
1110 
1111 
1112  def set_reference_fn(self, ref_fn):
1113  """set_reference_fn(ComponentHeader self, std::string const & ref_fn)"""
1114  return _IMP_multifit.ComponentHeader_set_reference_fn(self, ref_fn)
1115 
1116 
1117  def get_reference_fn(self):
1118  """get_reference_fn(ComponentHeader self) -> std::string"""
1119  return _IMP_multifit.ComponentHeader_get_reference_fn(self)
1120 
1121 
1122  def get_version_info(self):
1123  """get_version_info(ComponentHeader self) -> VersionInfo"""
1124  return _IMP_multifit.ComponentHeader_get_version_info(self)
1125 
1126 
1127  def __str__(self):
1128  """__str__(ComponentHeader self) -> std::string"""
1129  return _IMP_multifit.ComponentHeader___str__(self)
1130 
1131 
1132  def __repr__(self):
1133  """__repr__(ComponentHeader self) -> std::string"""
1134  return _IMP_multifit.ComponentHeader___repr__(self)
1135 
1136 
1137  @staticmethod
1138  def get_from(o):
1139  return _object_cast_to_ComponentHeader(o)
1140 
1141 ComponentHeader_swigregister = _IMP_multifit.ComponentHeader_swigregister
1142 ComponentHeader_swigregister(ComponentHeader)
1143 
1144 class AssemblyHeader(IMP.Object):
1145  """Proxy of C++ IMP::multifit::AssemblyHeader class"""
1146  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1147 
1148  def __init__(self):
1149  """__init__(IMP::multifit::AssemblyHeader self) -> AssemblyHeader"""
1150  this = _IMP_multifit.new_AssemblyHeader()
1151  try:
1152  self.this.append(this)
1153  except:
1154  self.this = this
1155 
1156  def set_dens_fn(self, dens_fn):
1157  """set_dens_fn(AssemblyHeader self, std::string const & dens_fn)"""
1158  return _IMP_multifit.AssemblyHeader_set_dens_fn(self, dens_fn)
1159 
1160 
1161  def get_dens_fn(self):
1162  """get_dens_fn(AssemblyHeader self) -> std::string"""
1163  return _IMP_multifit.AssemblyHeader_get_dens_fn(self)
1164 
1165 
1166  def set_resolution(self, res):
1167  """set_resolution(AssemblyHeader self, float res)"""
1168  return _IMP_multifit.AssemblyHeader_set_resolution(self, res)
1169 
1170 
1171  def get_resolution(self):
1172  """get_resolution(AssemblyHeader self) -> float"""
1173  return _IMP_multifit.AssemblyHeader_get_resolution(self)
1174 
1175 
1176  def get_spacing(self):
1177  """get_spacing(AssemblyHeader self) -> float"""
1178  return _IMP_multifit.AssemblyHeader_get_spacing(self)
1179 
1180 
1181  def set_spacing(self, spacing):
1182  """set_spacing(AssemblyHeader self, float spacing)"""
1183  return _IMP_multifit.AssemblyHeader_set_spacing(self, spacing)
1184 
1185 
1186  def set_threshold(self, t):
1187  """set_threshold(AssemblyHeader self, float t)"""
1188  return _IMP_multifit.AssemblyHeader_set_threshold(self, t)
1189 
1190 
1191  def get_threshold(self):
1192  """get_threshold(AssemblyHeader self) -> float"""
1193  return _IMP_multifit.AssemblyHeader_get_threshold(self)
1194 
1195 
1196  def get_origin(self):
1197  """get_origin(AssemblyHeader self) -> Vector3D"""
1198  return _IMP_multifit.AssemblyHeader_get_origin(self)
1199 
1200 
1201  def set_origin(self, origin):
1202  """set_origin(AssemblyHeader self, Vector3D origin)"""
1203  return _IMP_multifit.AssemblyHeader_set_origin(self, origin)
1204 
1205 
1206  def get_coarse_ap_fn(self):
1207  """get_coarse_ap_fn(AssemblyHeader self) -> std::string"""
1208  return _IMP_multifit.AssemblyHeader_get_coarse_ap_fn(self)
1209 
1210 
1211  def set_coarse_ap_fn(self, new_fn):
1212  """set_coarse_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1213  return _IMP_multifit.AssemblyHeader_set_coarse_ap_fn(self, new_fn)
1214 
1215 
1216  def get_coarse_over_sampled_ap_fn(self):
1217  """get_coarse_over_sampled_ap_fn(AssemblyHeader self) -> std::string"""
1218  return _IMP_multifit.AssemblyHeader_get_coarse_over_sampled_ap_fn(self)
1219 
1220 
1221  def set_coarse_over_sampled_ap_fn(self, new_fn):
1222  """set_coarse_over_sampled_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1223  return _IMP_multifit.AssemblyHeader_set_coarse_over_sampled_ap_fn(self, new_fn)
1224 
1225 
1226  def get_fine_ap_fn(self):
1227  """get_fine_ap_fn(AssemblyHeader self) -> std::string"""
1228  return _IMP_multifit.AssemblyHeader_get_fine_ap_fn(self)
1229 
1230 
1231  def set_fine_ap_fn(self, new_fn):
1232  """set_fine_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1233  return _IMP_multifit.AssemblyHeader_set_fine_ap_fn(self, new_fn)
1234 
1235 
1236  def get_fine_over_sampled_ap_fn(self):
1237  """get_fine_over_sampled_ap_fn(AssemblyHeader self) -> std::string"""
1238  return _IMP_multifit.AssemblyHeader_get_fine_over_sampled_ap_fn(self)
1239 
1240 
1241  def set_fine_over_sampled_ap_fn(self, new_fn):
1242  """set_fine_over_sampled_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1243  return _IMP_multifit.AssemblyHeader_set_fine_over_sampled_ap_fn(self, new_fn)
1244 
1245 
1246  def get_version_info(self):
1247  """get_version_info(AssemblyHeader self) -> VersionInfo"""
1248  return _IMP_multifit.AssemblyHeader_get_version_info(self)
1249 
1250 
1251  def __str__(self):
1252  """__str__(AssemblyHeader self) -> std::string"""
1253  return _IMP_multifit.AssemblyHeader___str__(self)
1254 
1255 
1256  def __repr__(self):
1257  """__repr__(AssemblyHeader self) -> std::string"""
1258  return _IMP_multifit.AssemblyHeader___repr__(self)
1259 
1260 
1261  @staticmethod
1262  def get_from(o):
1263  return _object_cast_to_AssemblyHeader(o)
1264 
1265 AssemblyHeader_swigregister = _IMP_multifit.AssemblyHeader_swigregister
1266 AssemblyHeader_swigregister(AssemblyHeader)
1267 
1268 class SettingsData(IMP.Object):
1269  """Proxy of C++ IMP::multifit::SettingsData class"""
1270  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1271 
1272  def __init__(self):
1273  """__init__(IMP::multifit::SettingsData self) -> SettingsData"""
1274  this = _IMP_multifit.new_SettingsData()
1275  try:
1276  self.this.append(this)
1277  except:
1278  self.this = this
1279 
1280  def show_component_header_line(*args):
1281  """
1282  show_component_header_line(_ostream out)
1283  show_component_header_line()
1284  """
1285  return _IMP_multifit.SettingsData_show_component_header_line(*args)
1286 
1287  show_component_header_line = staticmethod(show_component_header_line)
1288 
1289  def get_component_header_line():
1290  """get_component_header_line() -> std::string"""
1291  return _IMP_multifit.SettingsData_get_component_header_line()
1292 
1293  get_component_header_line = staticmethod(get_component_header_line)
1294 
1295  def show_density_header_line(*args):
1296  """
1297  show_density_header_line(_ostream out)
1298  show_density_header_line()
1299  """
1300  return _IMP_multifit.SettingsData_show_density_header_line(*args)
1301 
1302  show_density_header_line = staticmethod(show_density_header_line)
1303 
1304  def get_density_header_line():
1305  """get_density_header_line() -> std::string"""
1306  return _IMP_multifit.SettingsData_get_density_header_line()
1307 
1308  get_density_header_line = staticmethod(get_density_header_line)
1309 
1310  def set_assembly_filename(self, fn):
1311  """set_assembly_filename(SettingsData self, std::string const & fn)"""
1312  return _IMP_multifit.SettingsData_set_assembly_filename(self, fn)
1313 
1314 
1315  def get_assembly_filename(self):
1316  """get_assembly_filename(SettingsData self) -> char const *"""
1317  return _IMP_multifit.SettingsData_get_assembly_filename(self)
1318 
1319 
1320  def set_assembly_header(self, h):
1321  """set_assembly_header(SettingsData self, AssemblyHeader h)"""
1322  return _IMP_multifit.SettingsData_set_assembly_header(self, h)
1323 
1324 
1325  def get_assembly_header(self):
1326  """get_assembly_header(SettingsData self) -> AssemblyHeader"""
1327  return _IMP_multifit.SettingsData_get_assembly_header(self)
1328 
1329 
1330  def set_data_path(self, fn):
1331  """set_data_path(SettingsData self, std::string const & fn)"""
1332  return _IMP_multifit.SettingsData_set_data_path(self, fn)
1333 
1334 
1335  def get_data_path(self):
1336  """get_data_path(SettingsData self) -> std::string"""
1337  return _IMP_multifit.SettingsData_get_data_path(self)
1338 
1339 
1340  def get_version_info(self):
1341  """get_version_info(SettingsData self) -> VersionInfo"""
1342  return _IMP_multifit.SettingsData_get_version_info(self)
1343 
1344 
1345  def remove_component_header(self, d):
1346  """remove_component_header(SettingsData self, ComponentHeader d)"""
1347  return _IMP_multifit.SettingsData_remove_component_header(self, d)
1348 
1349 
1350  def remove_component_headers(self, d):
1351  """remove_component_headers(SettingsData self, IMP::multifit::ComponentHeaders const & d)"""
1352  return _IMP_multifit.SettingsData_remove_component_headers(self, d)
1353 
1354 
1355  def set_component_headers(self, ps):
1356  """set_component_headers(SettingsData self, IMP::multifit::ComponentHeaders const & ps)"""
1357  return _IMP_multifit.SettingsData_set_component_headers(self, ps)
1358 
1359 
1360  def set_component_headers_order(self, objs):
1361  """set_component_headers_order(SettingsData self, IMP::multifit::ComponentHeaders const & objs)"""
1362  return _IMP_multifit.SettingsData_set_component_headers_order(self, objs)
1363 
1364 
1365  def add_component_header(self, obj):
1366  """add_component_header(SettingsData self, ComponentHeader obj) -> unsigned int"""
1367  return _IMP_multifit.SettingsData_add_component_header(self, obj)
1368 
1369 
1370  def add_component_headers(self, objs):
1371  """add_component_headers(SettingsData self, IMP::multifit::ComponentHeaders const & objs)"""
1372  return _IMP_multifit.SettingsData_add_component_headers(self, objs)
1373 
1374 
1375  def clear_component_headers(self):
1376  """clear_component_headers(SettingsData self)"""
1377  return _IMP_multifit.SettingsData_clear_component_headers(self)
1378 
1379 
1380  def get_number_of_component_headers(self):
1381  """get_number_of_component_headers(SettingsData self) -> unsigned int"""
1382  return _IMP_multifit.SettingsData_get_number_of_component_headers(self)
1383 
1384 
1385  def get_has_component_headers(self):
1386  """get_has_component_headers(SettingsData self) -> bool"""
1387  return _IMP_multifit.SettingsData_get_has_component_headers(self)
1388 
1389 
1390  def get_component_header(self, i):
1391  """get_component_header(SettingsData self, unsigned int i) -> ComponentHeader"""
1392  return _IMP_multifit.SettingsData_get_component_header(self, i)
1393 
1394 
1395  def get_component_headers(self):
1396  """get_component_headers(SettingsData self) -> IMP::multifit::ComponentHeaders"""
1397  return _IMP_multifit.SettingsData_get_component_headers(self)
1398 
1399 
1400  def reserve_component_headers(self, sz):
1401  """reserve_component_headers(SettingsData self, unsigned int sz)"""
1402  return _IMP_multifit.SettingsData_reserve_component_headers(self, sz)
1403 
1404 
1405  def __str__(self):
1406  """__str__(SettingsData self) -> std::string"""
1407  return _IMP_multifit.SettingsData___str__(self)
1408 
1409 
1410  def __repr__(self):
1411  """__repr__(SettingsData self) -> std::string"""
1412  return _IMP_multifit.SettingsData___repr__(self)
1413 
1414 
1415  @staticmethod
1416  def get_from(o):
1417  return _object_cast_to_SettingsData(o)
1418 
1419 SettingsData_swigregister = _IMP_multifit.SettingsData_swigregister
1420 SettingsData_swigregister(SettingsData)
1421 
1422 def SettingsData_show_component_header_line(*args):
1423  """
1424  show_component_header_line(_ostream out)
1425  SettingsData_show_component_header_line()
1426  """
1427  return _IMP_multifit.SettingsData_show_component_header_line(*args)
1428 
1429 def SettingsData_get_component_header_line():
1430  """SettingsData_get_component_header_line() -> std::string"""
1431  return _IMP_multifit.SettingsData_get_component_header_line()
1432 
1433 def SettingsData_show_density_header_line(*args):
1434  """
1435  show_density_header_line(_ostream out)
1436  SettingsData_show_density_header_line()
1437  """
1438  return _IMP_multifit.SettingsData_show_density_header_line(*args)
1439 
1440 def SettingsData_get_density_header_line():
1441  """SettingsData_get_density_header_line() -> std::string"""
1442  return _IMP_multifit.SettingsData_get_density_header_line()
1443 
1444 
1445 def read_settings(filename):
1446  """read_settings(char const * filename) -> SettingsData"""
1447  return _IMP_multifit.read_settings(filename)
1448 
1449 def write_settings(filename, sd):
1450  """write_settings(char const * filename, SettingsData sd)"""
1451  return _IMP_multifit.write_settings(filename, sd)
1452 class WeightedExcludedVolumeRestraint(IMP.Restraint):
1453  """Proxy of C++ IMP::multifit::WeightedExcludedVolumeRestraint class"""
1454  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1455 
1456  def __init__(self, *args):
1457  """
1458  __init__(IMP::multifit::WeightedExcludedVolumeRestraint self, IMP::core::RigidBodies rbs, Refiner refiner, FloatKey weight_key) -> WeightedExcludedVolumeRestraint
1459  __init__(IMP::multifit::WeightedExcludedVolumeRestraint self, IMP::core::RigidBodies rbs, Refiner refiner) -> WeightedExcludedVolumeRestraint
1460  """
1461  this = _IMP_multifit.new_WeightedExcludedVolumeRestraint(*args)
1462  try:
1463  self.this.append(this)
1464  except:
1465  self.this = this
1466 
1467  def do_get_inputs(self):
1468  """do_get_inputs(WeightedExcludedVolumeRestraint self) -> IMP::ModelObjectsTemp"""
1469  return _IMP_multifit.WeightedExcludedVolumeRestraint_do_get_inputs(self)
1470 
1471 
1472  def get_version_info(self):
1473  """get_version_info(WeightedExcludedVolumeRestraint self) -> VersionInfo"""
1474  return _IMP_multifit.WeightedExcludedVolumeRestraint_get_version_info(self)
1475 
1476 
1477  def __str__(self):
1478  """__str__(WeightedExcludedVolumeRestraint self) -> std::string"""
1479  return _IMP_multifit.WeightedExcludedVolumeRestraint___str__(self)
1480 
1481 
1482  def __repr__(self):
1483  """__repr__(WeightedExcludedVolumeRestraint self) -> std::string"""
1484  return _IMP_multifit.WeightedExcludedVolumeRestraint___repr__(self)
1485 
1486 
1487  @staticmethod
1488  def get_from(o):
1489  return _object_cast_to_WeightedExcludedVolumeRestraint(o)
1490 
1491 WeightedExcludedVolumeRestraint_swigregister = _IMP_multifit.WeightedExcludedVolumeRestraint_swigregister
1492 WeightedExcludedVolumeRestraint_swigregister(WeightedExcludedVolumeRestraint)
1493 
1494 class FFTFittingOutput(IMP.Object):
1495  """Proxy of C++ IMP::multifit::FFTFittingOutput class"""
1496  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1497 
1498  def __init__(self):
1499  """__init__(IMP::multifit::FFTFittingOutput self) -> FFTFittingOutput"""
1500  this = _IMP_multifit.new_FFTFittingOutput()
1501  try:
1502  self.this.append(this)
1503  except:
1504  self.this = this
1505 
1506  def get_version_info(self):
1507  """get_version_info(FFTFittingOutput self) -> VersionInfo"""
1508  return _IMP_multifit.FFTFittingOutput_get_version_info(self)
1509 
1510  best_fits_ = _swig_property(_IMP_multifit.FFTFittingOutput_best_fits__get, _IMP_multifit.FFTFittingOutput_best_fits__set)
1511  best_trans_per_rot_ = _swig_property(_IMP_multifit.FFTFittingOutput_best_trans_per_rot__get, _IMP_multifit.FFTFittingOutput_best_trans_per_rot__set)
1512 
1513  def __str__(self):
1514  """__str__(FFTFittingOutput self) -> std::string"""
1515  return _IMP_multifit.FFTFittingOutput___str__(self)
1516 
1517 
1518  def __repr__(self):
1519  """__repr__(FFTFittingOutput self) -> std::string"""
1520  return _IMP_multifit.FFTFittingOutput___repr__(self)
1521 
1522 
1523  @staticmethod
1524  def get_from(o):
1525  return _object_cast_to_FFTFittingOutput(o)
1526 
1527 FFTFittingOutput_swigregister = _IMP_multifit.FFTFittingOutput_swigregister
1528 FFTFittingOutput_swigregister(FFTFittingOutput)
1529 
1530 class FFTFitting(IMP.Object):
1531  """Proxy of C++ IMP::multifit::FFTFitting class"""
1532  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1533 
1534  def get_version_info(self):
1535  """get_version_info(FFTFitting self) -> VersionInfo"""
1536  return _IMP_multifit.FFTFitting_get_version_info(self)
1537 
1538 
1539  def __init__(self):
1540  """__init__(IMP::multifit::FFTFitting self) -> FFTFitting"""
1541  this = _IMP_multifit.new_FFTFitting()
1542  try:
1543  self.this.append(this)
1544  except:
1545  self.this = this
1546 
1547  def do_global_fitting(self, *args):
1548  """
1549  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=True, int num_angle_per_voxel=1, std::string const & angles_filename) -> FFTFittingOutput
1550  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=True, int num_angle_per_voxel=1) -> FFTFittingOutput
1551  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=True) -> FFTFittingOutput
1552  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle) -> FFTFittingOutput
1553  """
1554  return _IMP_multifit.FFTFitting_do_global_fitting(self, *args)
1555 
1556 
1557  def do_local_fitting(self, *args):
1558  """
1559  do_local_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, double max_angle_sampling_rad, double max_translation, int num_fits_to_report, bool cluster_fits, int num_angle_per_voxel, double max_clustering_translation, double max_clustering_rotation, std::string const & angles_filename) -> FFTFittingOutput
1560  do_local_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, double max_angle_sampling_rad, double max_translation, int num_fits_to_report, bool cluster_fits, int num_angle_per_voxel, double max_clustering_translation, double max_clustering_rotation) -> FFTFittingOutput
1561  """
1562  return _IMP_multifit.FFTFitting_do_local_fitting(self, *args)
1563 
1564 
1565  def __str__(self):
1566  """__str__(FFTFitting self) -> std::string"""
1567  return _IMP_multifit.FFTFitting___str__(self)
1568 
1569 
1570  def __repr__(self):
1571  """__repr__(FFTFitting self) -> std::string"""
1572  return _IMP_multifit.FFTFitting___repr__(self)
1573 
1574 
1575  @staticmethod
1576  def get_from(o):
1577  return _object_cast_to_FFTFitting(o)
1578 
1579 FFTFitting_swigregister = _IMP_multifit.FFTFitting_swigregister
1580 FFTFitting_swigregister(FFTFitting)
1581 
1582 
1583 def fft_based_rigid_fitting(mol2fit, dmap, density_threshold, angle_sampling_interval_rad):
1584  """fft_based_rigid_fitting(Hierarchy mol2fit, DensityMap dmap, double density_threshold, double angle_sampling_interval_rad) -> IMP::multifit::FittingSolutionRecords"""
1585  return _IMP_multifit.fft_based_rigid_fitting(mol2fit, dmap, density_threshold, angle_sampling_interval_rad)
1586 
1587 def remove_background(dmap, threshold, edge_threshold):
1588  """remove_background(DensityMap dmap, float threshold, float edge_threshold) -> DensityMap"""
1589  return _IMP_multifit.remove_background(dmap, threshold, edge_threshold)
1590 
1591 def get_connected_components(dmap, threshold, edge_threshold):
1592  """get_connected_components(DensityMap dmap, float threshold, float edge_threshold) -> IMP::IntsList"""
1593  return _IMP_multifit.get_connected_components(dmap, threshold, edge_threshold)
1594 
1595 def get_segmentation(dmap, apix, density_threshold, num_means, pdb_filename, cmm_filename, seg_filename, txt_filename):
1596  """get_segmentation(DensityMap dmap, double apix, double density_threshold, int num_means, std::string const pdb_filename, std::string const cmm_filename, std::string const seg_filename, std::string const txt_filename)"""
1597  return _IMP_multifit.get_segmentation(dmap, apix, density_threshold, num_means, pdb_filename, cmm_filename, seg_filename, txt_filename)
1598 class ComplementarityRestraint(IMP.Restraint):
1599  """Proxy of C++ IMP::multifit::ComplementarityRestraint class"""
1600  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1601 
1602  def __init__(self, *args):
1603  """
1604  __init__(IMP::multifit::ComplementarityRestraint self, IMP::ParticlesTemp const & a, IMP::ParticlesTemp const & b, std::string name) -> ComplementarityRestraint
1605  __init__(IMP::multifit::ComplementarityRestraint self, IMP::ParticlesTemp const & a, IMP::ParticlesTemp const & b) -> ComplementarityRestraint
1606  """
1607  this = _IMP_multifit.new_ComplementarityRestraint(*args)
1608  try:
1609  self.this.append(this)
1610  except:
1611  self.this = this
1612 
1613  def set_maximum_penetration_score(self, s):
1614  """set_maximum_penetration_score(ComplementarityRestraint self, double s)"""
1615  return _IMP_multifit.ComplementarityRestraint_set_maximum_penetration_score(self, s)
1616 
1617 
1618  def set_maximum_penetration(self, d):
1619  """set_maximum_penetration(ComplementarityRestraint self, double d)"""
1620  return _IMP_multifit.ComplementarityRestraint_set_maximum_penetration(self, d)
1621 
1622 
1623  def set_maximum_separation(self, s):
1624  """set_maximum_separation(ComplementarityRestraint self, double s)"""
1625  return _IMP_multifit.ComplementarityRestraint_set_maximum_separation(self, s)
1626 
1627 
1628  def set_complementarity_thickness(self, th):
1629  """set_complementarity_thickness(ComplementarityRestraint self, double th)"""
1630  return _IMP_multifit.ComplementarityRestraint_set_complementarity_thickness(self, th)
1631 
1632 
1633  def set_complementarity_value(self, th):
1634  """set_complementarity_value(ComplementarityRestraint self, double th)"""
1635  return _IMP_multifit.ComplementarityRestraint_set_complementarity_value(self, th)
1636 
1637 
1638  def set_interior_layer_thickness(self, th):
1639  """set_interior_layer_thickness(ComplementarityRestraint self, double th)"""
1640  return _IMP_multifit.ComplementarityRestraint_set_interior_layer_thickness(self, th)
1641 
1642 
1643  def set_penetration_coefficient(self, pc):
1644  """set_penetration_coefficient(ComplementarityRestraint self, double pc)"""
1645  return _IMP_multifit.ComplementarityRestraint_set_penetration_coefficient(self, pc)
1646 
1647 
1648  def set_complementarity_coefficient(self, cc):
1649  """set_complementarity_coefficient(ComplementarityRestraint self, double cc)"""
1650  return _IMP_multifit.ComplementarityRestraint_set_complementarity_coefficient(self, cc)
1651 
1652 
1653  def set_boundary_coefficient(self, bc):
1654  """set_boundary_coefficient(ComplementarityRestraint self, double bc)"""
1655  return _IMP_multifit.ComplementarityRestraint_set_boundary_coefficient(self, bc)
1656 
1657 
1658  def get_voxel_size(self):
1659  """get_voxel_size(ComplementarityRestraint self) -> float"""
1660  return _IMP_multifit.ComplementarityRestraint_get_voxel_size(self)
1661 
1662 
1663  def do_get_inputs(self):
1664  """do_get_inputs(ComplementarityRestraint self) -> IMP::ModelObjectsTemp"""
1665  return _IMP_multifit.ComplementarityRestraint_do_get_inputs(self)
1666 
1667 
1668  def get_version_info(self):
1669  """get_version_info(ComplementarityRestraint self) -> VersionInfo"""
1670  return _IMP_multifit.ComplementarityRestraint_get_version_info(self)
1671 
1672 
1673  def __str__(self):
1674  """__str__(ComplementarityRestraint self) -> std::string"""
1675  return _IMP_multifit.ComplementarityRestraint___str__(self)
1676 
1677 
1678  def __repr__(self):
1679  """__repr__(ComplementarityRestraint self) -> std::string"""
1680  return _IMP_multifit.ComplementarityRestraint___repr__(self)
1681 
1682 
1683  @staticmethod
1684  def get_from(o):
1685  return _object_cast_to_ComplementarityRestraint(o)
1686 
1687 ComplementarityRestraint_swigregister = _IMP_multifit.ComplementarityRestraint_swigregister
1688 ComplementarityRestraint_swigregister(ComplementarityRestraint)
1689 
1690 
1691 def read_fitting_solutions(fitting_fn):
1692  """read_fitting_solutions(char const * fitting_fn) -> IMP::multifit::FittingSolutionRecords"""
1693  return _IMP_multifit.read_fitting_solutions(fitting_fn)
1694 
1695 def write_fitting_solutions(fitting_fn, fit_sols, num_sols=-1):
1696  """
1697  write_fitting_solutions(char const * fitting_fn, IMP::multifit::FittingSolutionRecords const & fit_sols, int num_sols=-1)
1698  write_fitting_solutions(char const * fitting_fn, IMP::multifit::FittingSolutionRecords const & fit_sols)
1699  """
1700  return _IMP_multifit.write_fitting_solutions(fitting_fn, fit_sols, num_sols)
1701 
1702 def convert_em_to_multifit_format(em_fits):
1703  """convert_em_to_multifit_format(FittingSolutions em_fits) -> IMP::multifit::FittingSolutionRecords"""
1704  return _IMP_multifit.convert_em_to_multifit_format(em_fits)
1705 
1706 def convert_multifit_to_em_format(multifit_fits):
1707  """convert_multifit_to_em_format(IMP::multifit::FittingSolutionRecords const & multifit_fits) -> FittingSolutions"""
1708  return _IMP_multifit.convert_multifit_to_em_format(multifit_fits)
1709 
1710 def convert_transformations_to_multifit_format(trans):
1711  """convert_transformations_to_multifit_format(IMP::algebra::Transformation3Ds const & trans) -> IMP::multifit::FittingSolutionRecords"""
1712  return _IMP_multifit.convert_transformations_to_multifit_format(trans)
1713 
1714 def convert_multifit_format_to_transformations(recs):
1715  """convert_multifit_format_to_transformations(IMP::multifit::FittingSolutionRecords const & recs) -> IMP::algebra::Transformation3Ds"""
1716  return _IMP_multifit.convert_multifit_format_to_transformations(recs)
1717 
1718 def get_close_to_point(fit_sols, mh, ap, dist):
1719  """get_close_to_point(IMP::multifit::FittingSolutionRecords const & fit_sols, Hierarchy mh, Particle ap, IMP::Float dist) -> IMP::multifit::FittingSolutionRecords"""
1720  return _IMP_multifit.get_close_to_point(fit_sols, mh, ap, dist)
1721 class ProbabilisticAnchorGraph(IMP.Object):
1722  """Proxy of C++ IMP::multifit::ProbabilisticAnchorGraph class"""
1723  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1724 
1725  def __init__(self, anchor_positions):
1726  """__init__(IMP::multifit::ProbabilisticAnchorGraph self, IMP::algebra::Vector3Ds anchor_positions) -> ProbabilisticAnchorGraph"""
1727  this = _IMP_multifit.new_ProbabilisticAnchorGraph(anchor_positions)
1728  try:
1729  self.this.append(this)
1730  except:
1731  self.this = this
1732 
1733  def add_edge(self, i, j):
1734  """add_edge(ProbabilisticAnchorGraph self, int i, int j)"""
1735  return _IMP_multifit.ProbabilisticAnchorGraph_add_edge(self, i, j)
1736 
1737 
1738  def set_particle_probabilities_on_anchors(self, p, sols):
1739  """set_particle_probabilities_on_anchors(ProbabilisticAnchorGraph self, Particle p, IMP::multifit::FittingSolutionRecords sols)"""
1740  return _IMP_multifit.ProbabilisticAnchorGraph_set_particle_probabilities_on_anchors(self, p, sols)
1741 
1742 
1743  def show(self, *args):
1744  """
1745  show(ProbabilisticAnchorGraph self, _ostream out)
1746  show(ProbabilisticAnchorGraph self)
1747  """
1748  return _IMP_multifit.ProbabilisticAnchorGraph_show(self, *args)
1749 
1750 
1751  def get_number_of_anchors(self):
1752  """get_number_of_anchors(ProbabilisticAnchorGraph self) -> unsigned int"""
1753  return _IMP_multifit.ProbabilisticAnchorGraph_get_number_of_anchors(self)
1754 
1755 
1756  def get_number_of_edges(self):
1757  """get_number_of_edges(ProbabilisticAnchorGraph self) -> unsigned int"""
1758  return _IMP_multifit.ProbabilisticAnchorGraph_get_number_of_edges(self)
1759 
1760 
1761  def get_edge_list(self):
1762  """get_edge_list(ProbabilisticAnchorGraph self) -> IMP::IntRanges"""
1763  return _IMP_multifit.ProbabilisticAnchorGraph_get_edge_list(self)
1764 
1765 
1766  def get_anchors(self):
1767  """get_anchors(ProbabilisticAnchorGraph self) -> IMP::algebra::Vector3Ds"""
1768  return _IMP_multifit.ProbabilisticAnchorGraph_get_anchors(self)
1769 
1770 
1771  def get_particle_anchors(self, p, min_prob=0):
1772  """
1773  get_particle_anchors(ProbabilisticAnchorGraph self, Particle p, float min_prob=0) -> IMP::algebra::Vector3Ds
1774  get_particle_anchors(ProbabilisticAnchorGraph self, Particle p) -> IMP::algebra::Vector3Ds
1775  """
1776  return _IMP_multifit.ProbabilisticAnchorGraph_get_particle_anchors(self, p, min_prob)
1777 
1778 
1779  def get_are_probabilities_for_particle_set(self, p):
1780  """get_are_probabilities_for_particle_set(ProbabilisticAnchorGraph self, Particle p) -> bool"""
1781  return _IMP_multifit.ProbabilisticAnchorGraph_get_are_probabilities_for_particle_set(self, p)
1782 
1783 
1784  def get_particle_probabilities(self, p):
1785  """get_particle_probabilities(ProbabilisticAnchorGraph self, Particle p) -> IMP::Floats"""
1786  return _IMP_multifit.ProbabilisticAnchorGraph_get_particle_probabilities(self, p)
1787 
1788 
1789  def get_version_info(self):
1790  """get_version_info(ProbabilisticAnchorGraph self) -> VersionInfo"""
1791  return _IMP_multifit.ProbabilisticAnchorGraph_get_version_info(self)
1792 
1793 
1794  def __str__(self):
1795  """__str__(ProbabilisticAnchorGraph self) -> std::string"""
1796  return _IMP_multifit.ProbabilisticAnchorGraph___str__(self)
1797 
1798 
1799  def __repr__(self):
1800  """__repr__(ProbabilisticAnchorGraph self) -> std::string"""
1801  return _IMP_multifit.ProbabilisticAnchorGraph___repr__(self)
1802 
1803 
1804  @staticmethod
1805  def get_from(o):
1806  return _object_cast_to_ProbabilisticAnchorGraph(o)
1807 
1808 ProbabilisticAnchorGraph_swigregister = _IMP_multifit.ProbabilisticAnchorGraph_swigregister
1809 ProbabilisticAnchorGraph_swigregister(ProbabilisticAnchorGraph)
1810 
1811 class ProteinRecordData(object):
1812  """Proxy of C++ IMP::multifit::ProteinRecordData class"""
1813  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1814 
1815  def reset_all(self):
1816  """reset_all(ProteinRecordData self)"""
1817  return _IMP_multifit.ProteinRecordData_reset_all(self)
1818 
1819 
1820  def __init__(self, *args):
1821  """
1822  __init__(IMP::multifit::ProteinRecordData self) -> ProteinRecordData
1823  __init__(IMP::multifit::ProteinRecordData self, std::string const & name) -> ProteinRecordData
1824  __init__(IMP::multifit::ProteinRecordData self, std::string const & name, std::string const fn) -> ProteinRecordData
1825  __init__(IMP::multifit::ProteinRecordData self, std::string const & name, int start_res, int end_res, std::string const fn) -> ProteinRecordData
1826  __init__(IMP::multifit::ProteinRecordData self, std::string const & name, int start_res, int end_res, std::string const & fn, std::string const & surface_fn, std::string const & ref_fn) -> ProteinRecordData
1827  """
1828  this = _IMP_multifit.new_ProteinRecordData(*args)
1829  try:
1830  self.this.append(this)
1831  except:
1832  self.this = this
1833 
1834  def show(self, *args):
1835  """
1836  show(ProteinRecordData self, _ostream out)
1837  show(ProteinRecordData self)
1838  """
1839  return _IMP_multifit.ProteinRecordData_show(self, *args)
1840 
1841  name_ = _swig_property(_IMP_multifit.ProteinRecordData_name__get, _IMP_multifit.ProteinRecordData_name__set)
1842  start_res_ = _swig_property(_IMP_multifit.ProteinRecordData_start_res__get, _IMP_multifit.ProteinRecordData_start_res__set)
1843  end_res_ = _swig_property(_IMP_multifit.ProteinRecordData_end_res__get, _IMP_multifit.ProteinRecordData_end_res__set)
1844  filename_ = _swig_property(_IMP_multifit.ProteinRecordData_filename__get, _IMP_multifit.ProteinRecordData_filename__set)
1845  surface_filename_ = _swig_property(_IMP_multifit.ProteinRecordData_surface_filename__get, _IMP_multifit.ProteinRecordData_surface_filename__set)
1846  ref_filename_ = _swig_property(_IMP_multifit.ProteinRecordData_ref_filename__get, _IMP_multifit.ProteinRecordData_ref_filename__set)
1847 
1848  def __str__(self):
1849  """__str__(ProteinRecordData self) -> std::string"""
1850  return _IMP_multifit.ProteinRecordData___str__(self)
1851 
1852 
1853  def __repr__(self):
1854  """__repr__(ProteinRecordData self) -> std::string"""
1855  return _IMP_multifit.ProteinRecordData___repr__(self)
1856 
1857  __swig_destroy__ = _IMP_multifit.delete_ProteinRecordData
1858  __del__ = lambda self: None
1859 ProteinRecordData_swigregister = _IMP_multifit.ProteinRecordData_swigregister
1860 ProteinRecordData_swigregister(ProteinRecordData)
1861 
1862 class ProteomicsData(IMP.Object):
1863  """Proxy of C++ IMP::multifit::ProteomicsData class"""
1864  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1865 
1866  def __init__(self):
1867  """__init__(IMP::multifit::ProteomicsData self) -> ProteomicsData"""
1868  this = _IMP_multifit.new_ProteomicsData()
1869  try:
1870  self.this.append(this)
1871  except:
1872  self.this = this
1873 
1874  def add_protein(self, *args):
1875  """
1876  add_protein(ProteomicsData self, std::string name, int start_res, int end_res, std::string const & mol_fn, std::string const & surface_fn, std::string const & ref_fn) -> int
1877  add_protein(ProteomicsData self, ProteinRecordData rec) -> int
1878  """
1879  return _IMP_multifit.ProteomicsData_add_protein(self, *args)
1880 
1881 
1882  def find(self, name):
1883  """find(ProteomicsData self, std::string const & name) -> int"""
1884  return _IMP_multifit.ProteomicsData_find(self, name)
1885 
1886 
1887  def add_interaction(self, ii, used_for_filter, linker_len):
1888  """add_interaction(ProteomicsData self, IMP::Ints const & ii, bool used_for_filter, float linker_len)"""
1889  return _IMP_multifit.ProteomicsData_add_interaction(self, ii, used_for_filter, linker_len)
1890 
1891 
1892  def add_cross_link_interaction(self, prot1, res1, prot2, res2, used_in_filter, linker_len):
1893  """add_cross_link_interaction(ProteomicsData self, IMP::Int prot1, IMP::Int res1, IMP::Int prot2, IMP::Int res2, bool used_in_filter, IMP::Float linker_len)"""
1894  return _IMP_multifit.ProteomicsData_add_cross_link_interaction(self, prot1, res1, prot2, res2, used_in_filter, linker_len)
1895 
1896 
1897  def add_ev_pair(self, prot1, prot2):
1898  """add_ev_pair(ProteomicsData self, IMP::Int prot1, IMP::Int prot2)"""
1899  return _IMP_multifit.ProteomicsData_add_ev_pair(self, prot1, prot2)
1900 
1901 
1902  def get_number_of_proteins(self):
1903  """get_number_of_proteins(ProteomicsData self) -> int"""
1904  return _IMP_multifit.ProteomicsData_get_number_of_proteins(self)
1905 
1906 
1907  def get_number_of_interactions(self):
1908  """get_number_of_interactions(ProteomicsData self) -> int"""
1909  return _IMP_multifit.ProteomicsData_get_number_of_interactions(self)
1910 
1911 
1912  def get_interaction(self, interaction_ind):
1913  """get_interaction(ProteomicsData self, int interaction_ind) -> IMP::Ints"""
1914  return _IMP_multifit.ProteomicsData_get_interaction(self, interaction_ind)
1915 
1916 
1917  def get_interaction_part_of_filter(self, interaction_ind):
1918  """get_interaction_part_of_filter(ProteomicsData self, int interaction_ind) -> bool"""
1919  return _IMP_multifit.ProteomicsData_get_interaction_part_of_filter(self, interaction_ind)
1920 
1921 
1922  def get_interaction_linker_length(self, interaction_ind):
1923  """get_interaction_linker_length(ProteomicsData self, int interaction_ind) -> int"""
1924  return _IMP_multifit.ProteomicsData_get_interaction_linker_length(self, interaction_ind)
1925 
1926 
1927  def get_number_of_cross_links(self):
1928  """get_number_of_cross_links(ProteomicsData self) -> int"""
1929  return _IMP_multifit.ProteomicsData_get_number_of_cross_links(self)
1930 
1931 
1932  def get_cross_link(self, xlink_ind):
1933  """get_cross_link(ProteomicsData self, int xlink_ind) -> std::pair< IMP::IntPair,IMP::IntPair >"""
1934  return _IMP_multifit.ProteomicsData_get_cross_link(self, xlink_ind)
1935 
1936 
1937  def get_cross_link_part_of_filter(self, xlink_ind):
1938  """get_cross_link_part_of_filter(ProteomicsData self, int xlink_ind) -> bool"""
1939  return _IMP_multifit.ProteomicsData_get_cross_link_part_of_filter(self, xlink_ind)
1940 
1941 
1942  def get_cross_link_length(self, xlink_ind):
1943  """get_cross_link_length(ProteomicsData self, int xlink_ind) -> float"""
1944  return _IMP_multifit.ProteomicsData_get_cross_link_length(self, xlink_ind)
1945 
1946 
1947  def get_number_of_ev_pairs(self):
1948  """get_number_of_ev_pairs(ProteomicsData self) -> int"""
1949  return _IMP_multifit.ProteomicsData_get_number_of_ev_pairs(self)
1950 
1951 
1952  def get_ev_pair(self, ev_ind):
1953  """get_ev_pair(ProteomicsData self, int ev_ind) -> IMP::IntPair"""
1954  return _IMP_multifit.ProteomicsData_get_ev_pair(self, ev_ind)
1955 
1956 
1957  def get_protein_name(self, protein_ind):
1958  """get_protein_name(ProteomicsData self, int protein_ind) -> std::string"""
1959  return _IMP_multifit.ProteomicsData_get_protein_name(self, protein_ind)
1960 
1961 
1962  def get_end_res(self, protein_ind):
1963  """get_end_res(ProteomicsData self, int protein_ind) -> int"""
1964  return _IMP_multifit.ProteomicsData_get_end_res(self, protein_ind)
1965 
1966 
1967  def get_start_res(self, protein_ind):
1968  """get_start_res(ProteomicsData self, int protein_ind) -> int"""
1969  return _IMP_multifit.ProteomicsData_get_start_res(self, protein_ind)
1970 
1971 
1972  def get_protein_filename(self, protein_ind):
1973  """get_protein_filename(ProteomicsData self, int protein_ind) -> std::string"""
1974  return _IMP_multifit.ProteomicsData_get_protein_filename(self, protein_ind)
1975 
1976 
1977  def get_reference_filename(self, protein_ind):
1978  """get_reference_filename(ProteomicsData self, int protein_ind) -> std::string"""
1979  return _IMP_multifit.ProteomicsData_get_reference_filename(self, protein_ind)
1980 
1981 
1982  def get_surface_filename(self, protein_ind):
1983  """get_surface_filename(ProteomicsData self, int protein_ind) -> std::string"""
1984  return _IMP_multifit.ProteomicsData_get_surface_filename(self, protein_ind)
1985 
1986 
1987  def get_protein_data(self, protein_ind):
1988  """get_protein_data(ProteomicsData self, int protein_ind) -> ProteinRecordData"""
1989  return _IMP_multifit.ProteomicsData_get_protein_data(self, protein_ind)
1990 
1991 
1992  def get_version_info(self):
1993  """get_version_info(ProteomicsData self) -> VersionInfo"""
1994  return _IMP_multifit.ProteomicsData_get_version_info(self)
1995 
1996 
1997  def get_num_allowed_violated_interactions(self):
1998  """get_num_allowed_violated_interactions(ProteomicsData self) -> int"""
1999  return _IMP_multifit.ProteomicsData_get_num_allowed_violated_interactions(self)
2000 
2001 
2002  def set_num_allowed_violated_interactions(self, n):
2003  """set_num_allowed_violated_interactions(ProteomicsData self, int n)"""
2004  return _IMP_multifit.ProteomicsData_set_num_allowed_violated_interactions(self, n)
2005 
2006 
2007  def get_num_allowed_violated_cross_links(self):
2008  """get_num_allowed_violated_cross_links(ProteomicsData self) -> int"""
2009  return _IMP_multifit.ProteomicsData_get_num_allowed_violated_cross_links(self)
2010 
2011 
2012  def set_num_allowed_violated_cross_links(self, n):
2013  """set_num_allowed_violated_cross_links(ProteomicsData self, int n)"""
2014  return _IMP_multifit.ProteomicsData_set_num_allowed_violated_cross_links(self, n)
2015 
2016 
2017  def get_num_allowed_violated_ev(self):
2018  """get_num_allowed_violated_ev(ProteomicsData self) -> int"""
2019  return _IMP_multifit.ProteomicsData_get_num_allowed_violated_ev(self)
2020 
2021 
2022  def set_num_allowed_violated_ev(self, n):
2023  """set_num_allowed_violated_ev(ProteomicsData self, int n)"""
2024  return _IMP_multifit.ProteomicsData_set_num_allowed_violated_ev(self, n)
2025 
2026 
2027  def __str__(self):
2028  """__str__(ProteomicsData self) -> std::string"""
2029  return _IMP_multifit.ProteomicsData___str__(self)
2030 
2031 
2032  def __repr__(self):
2033  """__repr__(ProteomicsData self) -> std::string"""
2034  return _IMP_multifit.ProteomicsData___repr__(self)
2035 
2036 
2037  @staticmethod
2038  def get_from(o):
2039  return _object_cast_to_ProteomicsData(o)
2040 
2041 ProteomicsData_swigregister = _IMP_multifit.ProteomicsData_swigregister
2042 ProteomicsData_swigregister(ProteomicsData)
2043 
2044 
2045 def read_proteomics_data(proteomics_fn):
2046  """read_proteomics_data(char const * proteomics_fn) -> ProteomicsData"""
2047  return _IMP_multifit.read_proteomics_data(proteomics_fn)
2048 
2049 def get_partial_proteomics_data(pd, prot_names):
2050  """get_partial_proteomics_data(ProteomicsData pd, IMP::Strings const & prot_names) -> ProteomicsData"""
2051  return _IMP_multifit.get_partial_proteomics_data(pd, prot_names)
2052 class AnchorsData(object):
2053  """Proxy of C++ IMP::multifit::AnchorsData class"""
2054  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2055 
2056  def __init__(self, *args):
2057  """
2058  __init__(IMP::multifit::AnchorsData self) -> AnchorsData
2059  __init__(IMP::multifit::AnchorsData self, IMP::algebra::Vector3Ds points, IMP::IntPairs edges) -> AnchorsData
2060  """
2061  this = _IMP_multifit.new_AnchorsData(*args)
2062  try:
2063  self.this.append(this)
2064  except:
2065  self.this = this
2066 
2067  def remove_edges_for_node(self, node_ind):
2068  """remove_edges_for_node(AnchorsData self, int node_ind)"""
2069  return _IMP_multifit.AnchorsData_remove_edges_for_node(self, node_ind)
2070 
2071 
2072  def get_number_of_points(self):
2073  """get_number_of_points(AnchorsData self) -> int"""
2074  return _IMP_multifit.AnchorsData_get_number_of_points(self)
2075 
2076 
2077  def get_number_of_edges(self):
2078  """get_number_of_edges(AnchorsData self) -> int"""
2079  return _IMP_multifit.AnchorsData_get_number_of_edges(self)
2080 
2081 
2082  def get_is_point_considered(self, node_ind):
2083  """get_is_point_considered(AnchorsData self, int node_ind) -> bool"""
2084  return _IMP_multifit.AnchorsData_get_is_point_considered(self, node_ind)
2085 
2086 
2087  def show(self, *args):
2088  """
2089  show(AnchorsData self, _ostream out)
2090  show(AnchorsData self)
2091  """
2092  return _IMP_multifit.AnchorsData_show(self, *args)
2093 
2094 
2095  def get_secondary_structure_is_set(self):
2096  """get_secondary_structure_is_set(AnchorsData self) -> bool"""
2097  return _IMP_multifit.AnchorsData_get_secondary_structure_is_set(self)
2098 
2099 
2100  def setup_secondary_structure(self, mdl):
2101  """setup_secondary_structure(AnchorsData self, Model mdl)"""
2102  return _IMP_multifit.AnchorsData_setup_secondary_structure(self, mdl)
2103 
2104 
2105  def set_secondary_structure_probabilities(self, *args):
2106  """
2107  set_secondary_structure_probabilities(AnchorsData self, IMP::Particles const & ssres_ps, IMP::Ints const & indices)
2108  set_secondary_structure_probabilities(AnchorsData self, IMP::Particles const & ssres_ps)
2109  """
2110  return _IMP_multifit.AnchorsData_set_secondary_structure_probabilities(self, *args)
2111 
2112 
2113  def get_secondary_structure_particles(self):
2114  """get_secondary_structure_particles(AnchorsData self) -> IMP::Particles"""
2115  return _IMP_multifit.AnchorsData_get_secondary_structure_particles(self)
2116 
2117  points_ = _swig_property(_IMP_multifit.AnchorsData_points__get, _IMP_multifit.AnchorsData_points__set)
2118  consider_point_ = _swig_property(_IMP_multifit.AnchorsData_consider_point__get, _IMP_multifit.AnchorsData_consider_point__set)
2119  edges_ = _swig_property(_IMP_multifit.AnchorsData_edges__get, _IMP_multifit.AnchorsData_edges__set)
2120 
2121  def __str__(self):
2122  """__str__(AnchorsData self) -> std::string"""
2123  return _IMP_multifit.AnchorsData___str__(self)
2124 
2125 
2126  def __repr__(self):
2127  """__repr__(AnchorsData self) -> std::string"""
2128  return _IMP_multifit.AnchorsData___repr__(self)
2129 
2130  __swig_destroy__ = _IMP_multifit.delete_AnchorsData
2131  __del__ = lambda self: None
2132 AnchorsData_swigregister = _IMP_multifit.AnchorsData_swigregister
2133 AnchorsData_swigregister(AnchorsData)
2134 
2135 
2136 def read_anchors_data(txt_filename):
2137  """read_anchors_data(char const * txt_filename) -> AnchorsData"""
2138  return _IMP_multifit.read_anchors_data(txt_filename)
2139 
2140 def write_txt(txt_filename, ad):
2141  """write_txt(std::string const & txt_filename, AnchorsData ad)"""
2142  return _IMP_multifit.write_txt(txt_filename, ad)
2143 
2144 def write_cmm(cmm_filename, marker_set_name, dpa):
2145  """write_cmm(std::string const & cmm_filename, std::string const & marker_set_name, AnchorsData dpa)"""
2146  return _IMP_multifit.write_cmm(cmm_filename, marker_set_name, dpa)
2147 
2148 def create_coarse_molecule_from_density(dmap, dens_threshold, num_beads, mdl, bead_radius):
2149  """create_coarse_molecule_from_density(DensityMap dmap, float dens_threshold, int num_beads, Model mdl, float bead_radius) -> Hierarchy"""
2150  return _IMP_multifit.create_coarse_molecule_from_density(dmap, dens_threshold, num_beads, mdl, bead_radius)
2151 
2152 def create_hit_map(rb, rb_ref, sols, damp):
2153  """create_hit_map(RigidBody rb, Refiner rb_ref, IMP::multifit::FittingSolutionRecords const & sols, DensityMap damp) -> DensityMap"""
2154  return _IMP_multifit.create_hit_map(rb, rb_ref, sols, damp)
2155 
2156 def get_points_close_to_molecule(mh, points, max_dist):
2157  """get_points_close_to_molecule(Hierarchy mh, IMP::algebra::Vector3Ds const points, IMP::Float max_dist) -> IMP::algebra::Vector3Ds"""
2158  return _IMP_multifit.get_points_close_to_molecule(mh, points, max_dist)
2159 
2160 def get_points_far_from_molecule(mh, points, max_dist):
2161  """get_points_far_from_molecule(Hierarchy mh, IMP::algebra::Vector3Ds const points, IMP::Float max_dist) -> IMP::algebra::Vector3Ds"""
2162  return _IMP_multifit.get_points_far_from_molecule(mh, points, max_dist)
2163 class RadiusOfGyrationRestraint(IMP.Restraint):
2164  """Proxy of C++ IMP::multifit::RadiusOfGyrationRestraint class"""
2165  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2166 
2167  def __init__(self, ps, num_residues, scale=1.):
2168  """
2169  __init__(IMP::multifit::RadiusOfGyrationRestraint self, IMP::Particles ps, int num_residues, IMP::Float scale=1.) -> RadiusOfGyrationRestraint
2170  __init__(IMP::multifit::RadiusOfGyrationRestraint self, IMP::Particles ps, int num_residues) -> RadiusOfGyrationRestraint
2171  """
2172  this = _IMP_multifit.new_RadiusOfGyrationRestraint(ps, num_residues, scale)
2173  try:
2174  self.this.append(this)
2175  except:
2176  self.this = this
2177 
2178  def do_get_inputs(self):
2179  """do_get_inputs(RadiusOfGyrationRestraint self) -> IMP::ModelObjectsTemp"""
2180  return _IMP_multifit.RadiusOfGyrationRestraint_do_get_inputs(self)
2181 
2182 
2183  def get_version_info(self):
2184  """get_version_info(RadiusOfGyrationRestraint self) -> VersionInfo"""
2185  return _IMP_multifit.RadiusOfGyrationRestraint_get_version_info(self)
2186 
2187 
2188  def set_radius_of_gyration(self, r):
2189  """set_radius_of_gyration(RadiusOfGyrationRestraint self, IMP::Float r)"""
2190  return _IMP_multifit.RadiusOfGyrationRestraint_set_radius_of_gyration(self, r)
2191 
2192 
2193  def get_radius_of_gyration(self):
2194  """get_radius_of_gyration(RadiusOfGyrationRestraint self) -> IMP::Float"""
2195  return _IMP_multifit.RadiusOfGyrationRestraint_get_radius_of_gyration(self)
2196 
2197 
2198  def __str__(self):
2199  """__str__(RadiusOfGyrationRestraint self) -> std::string"""
2200  return _IMP_multifit.RadiusOfGyrationRestraint___str__(self)
2201 
2202 
2203  def __repr__(self):
2204  """__repr__(RadiusOfGyrationRestraint self) -> std::string"""
2205  return _IMP_multifit.RadiusOfGyrationRestraint___repr__(self)
2206 
2207 
2208  @staticmethod
2209  def get_from(o):
2210  return _object_cast_to_RadiusOfGyrationRestraint(o)
2211 
2212 RadiusOfGyrationRestraint_swigregister = _IMP_multifit.RadiusOfGyrationRestraint_swigregister
2213 RadiusOfGyrationRestraint_swigregister(RadiusOfGyrationRestraint)
2214 
2215 
2216 def get_approximated_radius_of_gyration(len):
2217  """get_approximated_radius_of_gyration(int len) -> float"""
2218  return _IMP_multifit.get_approximated_radius_of_gyration(len)
2219 
2220 def get_actual_radius_of_gyration(ps):
2221  """get_actual_radius_of_gyration(IMP::ParticlesTemp ps) -> float"""
2222  return _IMP_multifit.get_actual_radius_of_gyration(ps)
2223 
2224 def get_approximated_radius(len):
2225  """get_approximated_radius(int len) -> float"""
2226  return _IMP_multifit.get_approximated_radius(len)
2227 class ProteinsAnchorsSamplingSpace(object):
2228  """Proxy of C++ IMP::multifit::ProteinsAnchorsSamplingSpace class"""
2229  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2230 
2231  def __init__(self, prots=None):
2232  """
2233  __init__(IMP::multifit::ProteinsAnchorsSamplingSpace self, ProteomicsData prots=None) -> ProteinsAnchorsSamplingSpace
2234  __init__(IMP::multifit::ProteinsAnchorsSamplingSpace self) -> ProteinsAnchorsSamplingSpace
2235  """
2236  this = _IMP_multifit.new_ProteinsAnchorsSamplingSpace(prots)
2237  try:
2238  self.this.append(this)
2239  except:
2240  self.this = this
2241 
2242  def set_anchors(self, data):
2243  """set_anchors(ProteinsAnchorsSamplingSpace self, AnchorsData data)"""
2244  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_anchors(self, data)
2245 
2246 
2247  def get_anchors(self):
2248  """get_anchors(ProteinsAnchorsSamplingSpace self) -> AnchorsData"""
2249  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_anchors(self)
2250 
2251 
2252  def get_anchors_filename(self):
2253  """get_anchors_filename(ProteinsAnchorsSamplingSpace self) -> std::string"""
2254  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_anchors_filename(self)
2255 
2256 
2257  def set_anchors_filename(self, fn):
2258  """set_anchors_filename(ProteinsAnchorsSamplingSpace self, std::string const & fn)"""
2259  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_anchors_filename(self, fn)
2260 
2261 
2262  def get_proteomics_data(self):
2263  """get_proteomics_data(ProteinsAnchorsSamplingSpace self) -> ProteomicsData"""
2264  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_proteomics_data(self)
2265 
2266 
2267  def add_protein(self, rec):
2268  """add_protein(ProteinsAnchorsSamplingSpace self, ProteinRecordData rec)"""
2269  return _IMP_multifit.ProteinsAnchorsSamplingSpace_add_protein(self, rec)
2270 
2271 
2272  def get_paths_for_protein(self, prot_name):
2273  """get_paths_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name) -> IMP::IntsList"""
2274  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_paths_for_protein(self, prot_name)
2275 
2276 
2277  def set_paths_filename_for_protein(self, prot_name, paths_filename):
2278  """set_paths_filename_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name, std::string const & paths_filename)"""
2279  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_paths_filename_for_protein(self, prot_name, paths_filename)
2280 
2281 
2282  def get_paths_filename_for_protein(self, prot_name):
2283  """get_paths_filename_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name) -> std::string"""
2284  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_paths_filename_for_protein(self, prot_name)
2285 
2286 
2287  def set_paths_for_protein(self, prot_name, paths):
2288  """set_paths_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name, IMP::IntsList paths)"""
2289  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_paths_for_protein(self, prot_name, paths)
2290 
2291 
2292  def show(self, *args):
2293  """
2294  show(ProteinsAnchorsSamplingSpace self, _ostream s)
2295  show(ProteinsAnchorsSamplingSpace self)
2296  """
2297  return _IMP_multifit.ProteinsAnchorsSamplingSpace_show(self, *args)
2298 
2299 
2300  def __str__(self):
2301  """__str__(ProteinsAnchorsSamplingSpace self) -> std::string"""
2302  return _IMP_multifit.ProteinsAnchorsSamplingSpace___str__(self)
2303 
2304 
2305  def __repr__(self):
2306  """__repr__(ProteinsAnchorsSamplingSpace self) -> std::string"""
2307  return _IMP_multifit.ProteinsAnchorsSamplingSpace___repr__(self)
2308 
2309  __swig_destroy__ = _IMP_multifit.delete_ProteinsAnchorsSamplingSpace
2310  __del__ = lambda self: None
2311 ProteinsAnchorsSamplingSpace_swigregister = _IMP_multifit.ProteinsAnchorsSamplingSpace_swigregister
2312 ProteinsAnchorsSamplingSpace_swigregister(ProteinsAnchorsSamplingSpace)
2313 
2314 
2315 def read_protein_anchors_mapping(*args):
2316  """
2317  read_protein_anchors_mapping(ProteomicsData prots, std::string const & anchors_prot_map_fn, int max_paths) -> ProteinsAnchorsSamplingSpace
2318  read_protein_anchors_mapping(ProteomicsData prots, std::string const & anchors_prot_map_fn) -> ProteinsAnchorsSamplingSpace
2319  """
2320  return _IMP_multifit.read_protein_anchors_mapping(*args)
2321 
2322 def write_protein_anchors_mapping(*args):
2323  """
2324  write_protein_anchors_mapping(std::string const & anchors_prot_map_fn, std::string const & anchors_fn, std::vector< std::pair< IMP::String,IMP::String >,std::allocator< std::pair< IMP::String,IMP::String > > > const & prot_paths)
2325  write_protein_anchors_mapping(std::string const & anchors_prot_map_fn, ProteinsAnchorsSamplingSpace pa, IMP::Strings const & prot_names)
2326  """
2327  return _IMP_multifit.write_protein_anchors_mapping(*args)
2328 
2329 def get_part_of_sampling_space(prots_ss, prot_names):
2330  """get_part_of_sampling_space(ProteinsAnchorsSamplingSpace prots_ss, IMP::Strings const & prot_names) -> ProteinsAnchorsSamplingSpace"""
2331  return _IMP_multifit.get_part_of_sampling_space(prots_ss, prot_names)
2332 
2333 def get_partial_assembly_setting_data(prots_sd, prot_names):
2334  """get_partial_assembly_setting_data(SettingsData prots_sd, IMP::Strings const & prot_names) -> SettingsData"""
2335  return _IMP_multifit.get_partial_assembly_setting_data(prots_sd, prot_names)
2336 
2337 def read_paths(*args):
2338  """
2339  read_paths(char const * txt_filename, int max_paths) -> IMP::IntsList
2340  read_paths(char const * txt_filename) -> IMP::IntsList
2341  """
2342  return _IMP_multifit.read_paths(*args)
2343 
2344 def write_paths(paths, txt_filename):
2345  """write_paths(IMP::IntsList const & paths, std::string const & txt_filename)"""
2346  return _IMP_multifit.write_paths(paths, txt_filename)
2347 
2348 def molecule2anchors(mh, k):
2349  """molecule2anchors(Hierarchy mh, int k) -> AnchorsData"""
2350  return _IMP_multifit.molecule2anchors(mh, k)
2351 
2352 def get_anchors_for_density(dmap, number_of_means, density_threshold, pdb_filename, cmm_filename, seg_filename, txt_filename):
2353  """get_anchors_for_density(DensityMap dmap, int number_of_means, float density_threshold, std::string pdb_filename, std::string cmm_filename, std::string seg_filename, std::string txt_filename)"""
2354  return _IMP_multifit.get_anchors_for_density(dmap, number_of_means, density_threshold, pdb_filename, cmm_filename, seg_filename, txt_filename)
2355 
2356 def get_anchor_indices_matching_secondary_structure(ad, ssrs, max_rmsd=0.7):
2357  """
2358  get_anchor_indices_matching_secondary_structure(AnchorsData ad, IMP::atom::SecondaryStructureResidues const & ssrs, IMP::Float max_rmsd=0.7) -> IMP::IntsList
2359  get_anchor_indices_matching_secondary_structure(AnchorsData ad, IMP::atom::SecondaryStructureResidues const & ssrs) -> IMP::IntsList
2360  """
2361  return _IMP_multifit.get_anchor_indices_matching_secondary_structure(ad, ssrs, max_rmsd)
2362 class DominoParams(object):
2363  """Proxy of C++ IMP::multifit::DominoParams class"""
2364  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2365 
2366  def __init__(self):
2367  """__init__(IMP::multifit::DominoParams self) -> DominoParams"""
2368  this = _IMP_multifit.new_DominoParams()
2369  try:
2370  self.this.append(this)
2371  except:
2372  self.this = this
2373 
2374  def add(self, pt):
2375  """add(DominoParams self, boost::property_tree::ptree const & pt)"""
2376  return _IMP_multifit.DominoParams_add(self, pt)
2377 
2378 
2379  def show(self, *args):
2380  """
2381  show(DominoParams self, _ostream s)
2382  show(DominoParams self)
2383  """
2384  return _IMP_multifit.DominoParams_show(self, *args)
2385 
2386  max_value_threshold_ = _swig_property(_IMP_multifit.DominoParams_max_value_threshold__get, _IMP_multifit.DominoParams_max_value_threshold__set)
2387  max_num_states_for_subset_ = _swig_property(_IMP_multifit.DominoParams_max_num_states_for_subset__get, _IMP_multifit.DominoParams_max_num_states_for_subset__set)
2388  max_anchor_penetration_ = _swig_property(_IMP_multifit.DominoParams_max_anchor_penetration__get, _IMP_multifit.DominoParams_max_anchor_penetration__set)
2389  heap_size_ = _swig_property(_IMP_multifit.DominoParams_heap_size__get, _IMP_multifit.DominoParams_heap_size__set)
2390  cache_size_ = _swig_property(_IMP_multifit.DominoParams_cache_size__get, _IMP_multifit.DominoParams_cache_size__set)
2391 
2392  def __str__(self):
2393  """__str__(DominoParams self) -> std::string"""
2394  return _IMP_multifit.DominoParams___str__(self)
2395 
2396 
2397  def __repr__(self):
2398  """__repr__(DominoParams self) -> std::string"""
2399  return _IMP_multifit.DominoParams___repr__(self)
2400 
2401  __swig_destroy__ = _IMP_multifit.delete_DominoParams
2402  __del__ = lambda self: None
2403 DominoParams_swigregister = _IMP_multifit.DominoParams_swigregister
2404 DominoParams_swigregister(DominoParams)
2405 
2406 class XlinkParams(object):
2407  """Proxy of C++ IMP::multifit::XlinkParams class"""
2408  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2409 
2410  def __init__(self):
2411  """__init__(IMP::multifit::XlinkParams self) -> XlinkParams"""
2412  this = _IMP_multifit.new_XlinkParams()
2413  try:
2414  self.this.append(this)
2415  except:
2416  self.this = this
2417 
2418  def add(self, pt):
2419  """add(XlinkParams self, boost::property_tree::ptree const & pt)"""
2420  return _IMP_multifit.XlinkParams_add(self, pt)
2421 
2422 
2423  def show(self, *args):
2424  """
2425  show(XlinkParams self, _ostream s)
2426  show(XlinkParams self)
2427  """
2428  return _IMP_multifit.XlinkParams_show(self, *args)
2429 
2430  upper_bound_ = _swig_property(_IMP_multifit.XlinkParams_upper_bound__get, _IMP_multifit.XlinkParams_upper_bound__set)
2431  k_ = _swig_property(_IMP_multifit.XlinkParams_k__get, _IMP_multifit.XlinkParams_k__set)
2432  max_xlink_val_ = _swig_property(_IMP_multifit.XlinkParams_max_xlink_val__get, _IMP_multifit.XlinkParams_max_xlink_val__set)
2433  treat_between_residues_ = _swig_property(_IMP_multifit.XlinkParams_treat_between_residues__get, _IMP_multifit.XlinkParams_treat_between_residues__set)
2434 
2435  def __str__(self):
2436  """__str__(XlinkParams self) -> std::string"""
2437  return _IMP_multifit.XlinkParams___str__(self)
2438 
2439 
2440  def __repr__(self):
2441  """__repr__(XlinkParams self) -> std::string"""
2442  return _IMP_multifit.XlinkParams___repr__(self)
2443 
2444  __swig_destroy__ = _IMP_multifit.delete_XlinkParams
2445  __del__ = lambda self: None
2446 XlinkParams_swigregister = _IMP_multifit.XlinkParams_swigregister
2447 XlinkParams_swigregister(XlinkParams)
2448 
2449 class ConnectivityParams(object):
2450  """Proxy of C++ IMP::multifit::ConnectivityParams class"""
2451  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2452 
2453  def __init__(self):
2454  """__init__(IMP::multifit::ConnectivityParams self) -> ConnectivityParams"""
2455  this = _IMP_multifit.new_ConnectivityParams()
2456  try:
2457  self.this.append(this)
2458  except:
2459  self.this = this
2460 
2461  def add(self, pt):
2462  """add(ConnectivityParams self, boost::property_tree::ptree const & pt)"""
2463  return _IMP_multifit.ConnectivityParams_add(self, pt)
2464 
2465 
2466  def show(self, *args):
2467  """
2468  show(ConnectivityParams self, _ostream s)
2469  show(ConnectivityParams self)
2470  """
2471  return _IMP_multifit.ConnectivityParams_show(self, *args)
2472 
2473  upper_bound_ = _swig_property(_IMP_multifit.ConnectivityParams_upper_bound__get, _IMP_multifit.ConnectivityParams_upper_bound__set)
2474  k_ = _swig_property(_IMP_multifit.ConnectivityParams_k__get, _IMP_multifit.ConnectivityParams_k__set)
2475  max_conn_rest_val_ = _swig_property(_IMP_multifit.ConnectivityParams_max_conn_rest_val__get, _IMP_multifit.ConnectivityParams_max_conn_rest_val__set)
2476 
2477  def __str__(self):
2478  """__str__(ConnectivityParams self) -> std::string"""
2479  return _IMP_multifit.ConnectivityParams___str__(self)
2480 
2481 
2482  def __repr__(self):
2483  """__repr__(ConnectivityParams self) -> std::string"""
2484  return _IMP_multifit.ConnectivityParams___repr__(self)
2485 
2486  __swig_destroy__ = _IMP_multifit.delete_ConnectivityParams
2487  __del__ = lambda self: None
2488 ConnectivityParams_swigregister = _IMP_multifit.ConnectivityParams_swigregister
2489 ConnectivityParams_swigregister(ConnectivityParams)
2490 
2491 class FragmentsParams(object):
2492  """Proxy of C++ IMP::multifit::FragmentsParams class"""
2493  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2494 
2495  def __init__(self):
2496  """__init__(IMP::multifit::FragmentsParams self) -> FragmentsParams"""
2497  this = _IMP_multifit.new_FragmentsParams()
2498  try:
2499  self.this.append(this)
2500  except:
2501  self.this = this
2502 
2503  def add(self, pt):
2504  """add(FragmentsParams self, boost::property_tree::ptree const & pt)"""
2505  return _IMP_multifit.FragmentsParams_add(self, pt)
2506 
2507 
2508  def show(self, *args):
2509  """
2510  show(FragmentsParams self, _ostream s)
2511  show(FragmentsParams self)
2512  """
2513  return _IMP_multifit.FragmentsParams_show(self, *args)
2514 
2515  frag_len_ = _swig_property(_IMP_multifit.FragmentsParams_frag_len__get, _IMP_multifit.FragmentsParams_frag_len__set)
2516  bead_radius_scale_ = _swig_property(_IMP_multifit.FragmentsParams_bead_radius_scale__get, _IMP_multifit.FragmentsParams_bead_radius_scale__set)
2517  load_atomic_ = _swig_property(_IMP_multifit.FragmentsParams_load_atomic__get, _IMP_multifit.FragmentsParams_load_atomic__set)
2518  subunit_rigid_ = _swig_property(_IMP_multifit.FragmentsParams_subunit_rigid__get, _IMP_multifit.FragmentsParams_subunit_rigid__set)
2519 
2520  def __str__(self):
2521  """__str__(FragmentsParams self) -> std::string"""
2522  return _IMP_multifit.FragmentsParams___str__(self)
2523 
2524 
2525  def __repr__(self):
2526  """__repr__(FragmentsParams self) -> std::string"""
2527  return _IMP_multifit.FragmentsParams___repr__(self)
2528 
2529  __swig_destroy__ = _IMP_multifit.delete_FragmentsParams
2530  __del__ = lambda self: None
2531 FragmentsParams_swigregister = _IMP_multifit.FragmentsParams_swigregister
2532 FragmentsParams_swigregister(FragmentsParams)
2533 
2534 class RogParams(object):
2535  """Proxy of C++ IMP::multifit::RogParams class"""
2536  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2537 
2538  def __init__(self):
2539  """__init__(IMP::multifit::RogParams self) -> RogParams"""
2540  this = _IMP_multifit.new_RogParams()
2541  try:
2542  self.this.append(this)
2543  except:
2544  self.this = this
2545 
2546  def add(self, pt):
2547  """add(RogParams self, boost::property_tree::ptree const & pt)"""
2548  return _IMP_multifit.RogParams_add(self, pt)
2549 
2550 
2551  def get_max_score(self):
2552  """get_max_score(RogParams self) -> float"""
2553  return _IMP_multifit.RogParams_get_max_score(self)
2554 
2555 
2556  def get_scale(self):
2557  """get_scale(RogParams self) -> float"""
2558  return _IMP_multifit.RogParams_get_scale(self)
2559 
2560 
2561  def show(self, *args):
2562  """
2563  show(RogParams self, _ostream s)
2564  show(RogParams self)
2565  """
2566  return _IMP_multifit.RogParams_show(self, *args)
2567 
2568 
2569  def __str__(self):
2570  """__str__(RogParams self) -> std::string"""
2571  return _IMP_multifit.RogParams___str__(self)
2572 
2573 
2574  def __repr__(self):
2575  """__repr__(RogParams self) -> std::string"""
2576  return _IMP_multifit.RogParams___repr__(self)
2577 
2578  __swig_destroy__ = _IMP_multifit.delete_RogParams
2579  __del__ = lambda self: None
2580 RogParams_swigregister = _IMP_multifit.RogParams_swigregister
2581 RogParams_swigregister(RogParams)
2582 
2583 class EVParams(object):
2584  """Proxy of C++ IMP::multifit::EVParams class"""
2585  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2586 
2587  def __init__(self):
2588  """__init__(IMP::multifit::EVParams self) -> EVParams"""
2589  this = _IMP_multifit.new_EVParams()
2590  try:
2591  self.this.append(this)
2592  except:
2593  self.this = this
2594 
2595  def add(self, pt):
2596  """add(EVParams self, boost::property_tree::ptree const & pt)"""
2597  return _IMP_multifit.EVParams_add(self, pt)
2598 
2599 
2600  def show(self, *args):
2601  """
2602  show(EVParams self, _ostream s)
2603  show(EVParams self)
2604  """
2605  return _IMP_multifit.EVParams_show(self, *args)
2606 
2607  pair_distance_ = _swig_property(_IMP_multifit.EVParams_pair_distance__get, _IMP_multifit.EVParams_pair_distance__set)
2608  pair_slack_ = _swig_property(_IMP_multifit.EVParams_pair_slack__get, _IMP_multifit.EVParams_pair_slack__set)
2609  hlb_mean_ = _swig_property(_IMP_multifit.EVParams_hlb_mean__get, _IMP_multifit.EVParams_hlb_mean__set)
2610  hlb_k_ = _swig_property(_IMP_multifit.EVParams_hlb_k__get, _IMP_multifit.EVParams_hlb_k__set)
2611  maximum_ev_score_for_pair_ = _swig_property(_IMP_multifit.EVParams_maximum_ev_score_for_pair__get, _IMP_multifit.EVParams_maximum_ev_score_for_pair__set)
2612  allowed_percentage_of_bad_pairs_ = _swig_property(_IMP_multifit.EVParams_allowed_percentage_of_bad_pairs__get, _IMP_multifit.EVParams_allowed_percentage_of_bad_pairs__set)
2613  scoring_mode_ = _swig_property(_IMP_multifit.EVParams_scoring_mode__get, _IMP_multifit.EVParams_scoring_mode__set)
2614 
2615  def __str__(self):
2616  """__str__(EVParams self) -> std::string"""
2617  return _IMP_multifit.EVParams___str__(self)
2618 
2619 
2620  def __repr__(self):
2621  """__repr__(EVParams self) -> std::string"""
2622  return _IMP_multifit.EVParams___repr__(self)
2623 
2624  __swig_destroy__ = _IMP_multifit.delete_EVParams
2625  __del__ = lambda self: None
2626 EVParams_swigregister = _IMP_multifit.EVParams_swigregister
2627 EVParams_swigregister(EVParams)
2628 
2629 class FiltersParams(object):
2630  """Proxy of C++ IMP::multifit::FiltersParams class"""
2631  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2632 
2633  def __init__(self):
2634  """__init__(IMP::multifit::FiltersParams self) -> FiltersParams"""
2635  this = _IMP_multifit.new_FiltersParams()
2636  try:
2637  self.this.append(this)
2638  except:
2639  self.this = this
2640 
2641  def add(self, pt):
2642  """add(FiltersParams self, boost::property_tree::ptree const & pt)"""
2643  return _IMP_multifit.FiltersParams_add(self, pt)
2644 
2645 
2646  def show(self, *args):
2647  """
2648  show(FiltersParams self, _ostream s)
2649  show(FiltersParams self)
2650  """
2651  return _IMP_multifit.FiltersParams_show(self, *args)
2652 
2653  max_num_violated_xlink_ = _swig_property(_IMP_multifit.FiltersParams_max_num_violated_xlink__get, _IMP_multifit.FiltersParams_max_num_violated_xlink__set)
2654  max_num_violated_conn_ = _swig_property(_IMP_multifit.FiltersParams_max_num_violated_conn__get, _IMP_multifit.FiltersParams_max_num_violated_conn__set)
2655  max_num_violated_ev_ = _swig_property(_IMP_multifit.FiltersParams_max_num_violated_ev__get, _IMP_multifit.FiltersParams_max_num_violated_ev__set)
2656 
2657  def __str__(self):
2658  """__str__(FiltersParams self) -> std::string"""
2659  return _IMP_multifit.FiltersParams___str__(self)
2660 
2661 
2662  def __repr__(self):
2663  """__repr__(FiltersParams self) -> std::string"""
2664  return _IMP_multifit.FiltersParams___repr__(self)
2665 
2666  __swig_destroy__ = _IMP_multifit.delete_FiltersParams
2667  __del__ = lambda self: None
2668 FiltersParams_swigregister = _IMP_multifit.FiltersParams_swigregister
2669 FiltersParams_swigregister(FiltersParams)
2670 
2671 class FittingParams(object):
2672  """Proxy of C++ IMP::multifit::FittingParams class"""
2673  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2674 
2675  def __init__(self):
2676  """__init__(IMP::multifit::FittingParams self) -> FittingParams"""
2677  this = _IMP_multifit.new_FittingParams()
2678  try:
2679  self.this.append(this)
2680  except:
2681  self.this = this
2682 
2683  def add(self, pt):
2684  """add(FittingParams self, boost::property_tree::ptree const & pt)"""
2685  return _IMP_multifit.FittingParams_add(self, pt)
2686 
2687 
2688  def show(self, *args):
2689  """
2690  show(FittingParams self, _ostream s)
2691  show(FittingParams self)
2692  """
2693  return _IMP_multifit.FittingParams_show(self, *args)
2694 
2695  pca_max_angle_diff_ = _swig_property(_IMP_multifit.FittingParams_pca_max_angle_diff__get, _IMP_multifit.FittingParams_pca_max_angle_diff__set)
2696  pca_max_size_diff_ = _swig_property(_IMP_multifit.FittingParams_pca_max_size_diff__get, _IMP_multifit.FittingParams_pca_max_size_diff__set)
2697  pca_max_cent_dist_diff_ = _swig_property(_IMP_multifit.FittingParams_pca_max_cent_dist_diff__get, _IMP_multifit.FittingParams_pca_max_cent_dist_diff__set)
2698  max_asmb_fit_score_ = _swig_property(_IMP_multifit.FittingParams_max_asmb_fit_score__get, _IMP_multifit.FittingParams_max_asmb_fit_score__set)
2699 
2700  def __str__(self):
2701  """__str__(FittingParams self) -> std::string"""
2702  return _IMP_multifit.FittingParams___str__(self)
2703 
2704 
2705  def __repr__(self):
2706  """__repr__(FittingParams self) -> std::string"""
2707  return _IMP_multifit.FittingParams___repr__(self)
2708 
2709  __swig_destroy__ = _IMP_multifit.delete_FittingParams
2710  __del__ = lambda self: None
2711 FittingParams_swigregister = _IMP_multifit.FittingParams_swigregister
2712 FittingParams_swigregister(FittingParams)
2713 
2714 class ComplementarityParams(object):
2715  """Proxy of C++ IMP::multifit::ComplementarityParams class"""
2716  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2717 
2718  def __init__(self):
2719  """__init__(IMP::multifit::ComplementarityParams self) -> ComplementarityParams"""
2720  this = _IMP_multifit.new_ComplementarityParams()
2721  try:
2722  self.this.append(this)
2723  except:
2724  self.this = this
2725 
2726  def add(self, pt):
2727  """add(ComplementarityParams self, boost::property_tree::ptree const & pt)"""
2728  return _IMP_multifit.ComplementarityParams_add(self, pt)
2729 
2730 
2731  def show(self, *args):
2732  """
2733  show(ComplementarityParams self, _ostream s)
2734  show(ComplementarityParams self)
2735  """
2736  return _IMP_multifit.ComplementarityParams_show(self, *args)
2737 
2738  max_score_ = _swig_property(_IMP_multifit.ComplementarityParams_max_score__get, _IMP_multifit.ComplementarityParams_max_score__set)
2739  max_penetration_ = _swig_property(_IMP_multifit.ComplementarityParams_max_penetration__get, _IMP_multifit.ComplementarityParams_max_penetration__set)
2740  interior_layer_thickness_ = _swig_property(_IMP_multifit.ComplementarityParams_interior_layer_thickness__get, _IMP_multifit.ComplementarityParams_interior_layer_thickness__set)
2741  boundary_coef_ = _swig_property(_IMP_multifit.ComplementarityParams_boundary_coef__get, _IMP_multifit.ComplementarityParams_boundary_coef__set)
2742  comp_coef_ = _swig_property(_IMP_multifit.ComplementarityParams_comp_coef__get, _IMP_multifit.ComplementarityParams_comp_coef__set)
2743  penetration_coef_ = _swig_property(_IMP_multifit.ComplementarityParams_penetration_coef__get, _IMP_multifit.ComplementarityParams_penetration_coef__set)
2744 
2745  def __str__(self):
2746  """__str__(ComplementarityParams self) -> std::string"""
2747  return _IMP_multifit.ComplementarityParams___str__(self)
2748 
2749 
2750  def __repr__(self):
2751  """__repr__(ComplementarityParams self) -> std::string"""
2752  return _IMP_multifit.ComplementarityParams___repr__(self)
2753 
2754  __swig_destroy__ = _IMP_multifit.delete_ComplementarityParams
2755  __del__ = lambda self: None
2756 ComplementarityParams_swigregister = _IMP_multifit.ComplementarityParams_swigregister
2757 ComplementarityParams_swigregister(ComplementarityParams)
2758 
2759 class AlignmentParams(object):
2760  """Proxy of C++ IMP::multifit::AlignmentParams class"""
2761  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2762 
2763  def __init__(self, param_filename):
2764  """__init__(IMP::multifit::AlignmentParams self, char const * param_filename) -> AlignmentParams"""
2765  this = _IMP_multifit.new_AlignmentParams(param_filename)
2766  try:
2767  self.this.append(this)
2768  except:
2769  self.this = this
2770 
2771  def get_domino_params(self):
2772  """get_domino_params(AlignmentParams self) -> DominoParams"""
2773  return _IMP_multifit.AlignmentParams_get_domino_params(self)
2774 
2775 
2776  def get_fitting_params(self):
2777  """get_fitting_params(AlignmentParams self) -> FittingParams"""
2778  return _IMP_multifit.AlignmentParams_get_fitting_params(self)
2779 
2780 
2781  def get_complementarity_params(self):
2782  """get_complementarity_params(AlignmentParams self) -> ComplementarityParams"""
2783  return _IMP_multifit.AlignmentParams_get_complementarity_params(self)
2784 
2785 
2786  def get_xlink_params(self):
2787  """get_xlink_params(AlignmentParams self) -> XlinkParams"""
2788  return _IMP_multifit.AlignmentParams_get_xlink_params(self)
2789 
2790 
2791  def get_connectivity_params(self):
2792  """get_connectivity_params(AlignmentParams self) -> ConnectivityParams"""
2793  return _IMP_multifit.AlignmentParams_get_connectivity_params(self)
2794 
2795 
2796  def get_rog_params(self):
2797  """get_rog_params(AlignmentParams self) -> RogParams"""
2798  return _IMP_multifit.AlignmentParams_get_rog_params(self)
2799 
2800 
2801  def get_fragments_params(self):
2802  """get_fragments_params(AlignmentParams self) -> FragmentsParams"""
2803  return _IMP_multifit.AlignmentParams_get_fragments_params(self)
2804 
2805 
2806  def get_filters_params(self):
2807  """get_filters_params(AlignmentParams self) -> FiltersParams"""
2808  return _IMP_multifit.AlignmentParams_get_filters_params(self)
2809 
2810 
2811  def get_ev_params(self):
2812  """get_ev_params(AlignmentParams self) -> EVParams"""
2813  return _IMP_multifit.AlignmentParams_get_ev_params(self)
2814 
2815 
2816  def show(self, *args):
2817  """
2818  show(AlignmentParams self, _ostream s)
2819  show(AlignmentParams self)
2820  """
2821  return _IMP_multifit.AlignmentParams_show(self, *args)
2822 
2823 
2824  def __str__(self):
2825  """__str__(AlignmentParams self) -> std::string"""
2826  return _IMP_multifit.AlignmentParams___str__(self)
2827 
2828 
2829  def __repr__(self):
2830  """__repr__(AlignmentParams self) -> std::string"""
2831  return _IMP_multifit.AlignmentParams___repr__(self)
2832 
2833  __swig_destroy__ = _IMP_multifit.delete_AlignmentParams
2834  __del__ = lambda self: None
2835 AlignmentParams_swigregister = _IMP_multifit.AlignmentParams_swigregister
2836 AlignmentParams_swigregister(AlignmentParams)
2837 
2838 class ProteomicsEMAlignmentAtomic(IMP.Object):
2839  """Proxy of C++ IMP::multifit::ProteomicsEMAlignmentAtomic class"""
2840  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2841 
2842  def __init__(self, mapping_data, asmb_data, align_param):
2843  """__init__(IMP::multifit::ProteomicsEMAlignmentAtomic self, ProteinsAnchorsSamplingSpace mapping_data, SettingsData asmb_data, AlignmentParams align_param) -> ProteomicsEMAlignmentAtomic"""
2844  this = _IMP_multifit.new_ProteomicsEMAlignmentAtomic(mapping_data, asmb_data, align_param)
2845  try:
2846  self.this.append(this)
2847  except:
2848  self.this = this
2849 
2850  def align(self):
2851  """align(ProteomicsEMAlignmentAtomic self)"""
2852  return _IMP_multifit.ProteomicsEMAlignmentAtomic_align(self)
2853 
2854 
2855  def add_all_restraints(self):
2856  """add_all_restraints(ProteomicsEMAlignmentAtomic self)"""
2857  return _IMP_multifit.ProteomicsEMAlignmentAtomic_add_all_restraints(self)
2858 
2859 
2860  def get_restraint_set(self):
2861  """get_restraint_set(ProteomicsEMAlignmentAtomic self) -> RestraintSet"""
2862  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_restraint_set(self)
2863 
2864 
2865  def add_states_and_filters(self):
2866  """add_states_and_filters(ProteomicsEMAlignmentAtomic self)"""
2867  return _IMP_multifit.ProteomicsEMAlignmentAtomic_add_states_and_filters(self)
2868 
2869 
2870  def show_domino_merge_tree(self):
2871  """show_domino_merge_tree(ProteomicsEMAlignmentAtomic self)"""
2872  return _IMP_multifit.ProteomicsEMAlignmentAtomic_show_domino_merge_tree(self)
2873 
2874 
2875  def get_combinations(self, uniques=False):
2876  """
2877  get_combinations(ProteomicsEMAlignmentAtomic self, bool uniques=False) -> IMP::domino::Assignments
2878  get_combinations(ProteomicsEMAlignmentAtomic self) -> IMP::domino::Assignments
2879  """
2880  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_combinations(self, uniques)
2881 
2882 
2883  def set_density_map(self, dmap, threshold):
2884  """set_density_map(ProteomicsEMAlignmentAtomic self, DensityMap dmap, float threshold)"""
2885  return _IMP_multifit.ProteomicsEMAlignmentAtomic_set_density_map(self, dmap, threshold)
2886 
2887 
2888  def get_molecules(self):
2889  """get_molecules(ProteomicsEMAlignmentAtomic self) -> IMP::atom::Hierarchies"""
2890  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_molecules(self)
2891 
2892 
2893  def get_rigid_bodies(self):
2894  """get_rigid_bodies(ProteomicsEMAlignmentAtomic self) -> IMP::core::RigidBodies"""
2895  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_rigid_bodies(self)
2896 
2897 
2898  def load_combination_of_states(self, state4particles):
2899  """load_combination_of_states(ProteomicsEMAlignmentAtomic self, IMP::Ints const & state4particles)"""
2900  return _IMP_multifit.ProteomicsEMAlignmentAtomic_load_combination_of_states(self, state4particles)
2901 
2902 
2903  def show_scores_header(self, *args):
2904  """
2905  show_scores_header(ProteomicsEMAlignmentAtomic self, _ostream ous)
2906  show_scores_header(ProteomicsEMAlignmentAtomic self)
2907  """
2908  return _IMP_multifit.ProteomicsEMAlignmentAtomic_show_scores_header(self, *args)
2909 
2910 
2911  def get_model(self):
2912  """get_model(ProteomicsEMAlignmentAtomic self) -> Model"""
2913  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_model(self)
2914 
2915 
2916  def set_fast_scoring(self, state):
2917  """set_fast_scoring(ProteomicsEMAlignmentAtomic self, bool state)"""
2918  return _IMP_multifit.ProteomicsEMAlignmentAtomic_set_fast_scoring(self, state)
2919 
2920 
2921  def get_version_info(self):
2922  """get_version_info(ProteomicsEMAlignmentAtomic self) -> VersionInfo"""
2923  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_version_info(self)
2924 
2925 
2926  def __str__(self):
2927  """__str__(ProteomicsEMAlignmentAtomic self) -> std::string"""
2928  return _IMP_multifit.ProteomicsEMAlignmentAtomic___str__(self)
2929 
2930 
2931  def __repr__(self):
2932  """__repr__(ProteomicsEMAlignmentAtomic self) -> std::string"""
2933  return _IMP_multifit.ProteomicsEMAlignmentAtomic___repr__(self)
2934 
2935 
2936  @staticmethod
2937  def get_from(o):
2938  return _object_cast_to_ProteomicsEMAlignmentAtomic(o)
2939 
2940 ProteomicsEMAlignmentAtomic_swigregister = _IMP_multifit.ProteomicsEMAlignmentAtomic_swigregister
2941 ProteomicsEMAlignmentAtomic_swigregister(ProteomicsEMAlignmentAtomic)
2942 
2943 
2944 def write_connolly_surface(atoms, fn, density, probe_radius):
2945  """write_connolly_surface(IMP::atom::Atoms atoms, TextOutput fn, float density, float probe_radius)"""
2946  return _IMP_multifit.write_connolly_surface(atoms, fn, density, probe_radius)
2947 class Ensemble(IMP.Object):
2948  """Proxy of C++ IMP::multifit::Ensemble class"""
2949  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2950 
2951  def load_combination(self, fit_comb):
2952  """load_combination(Ensemble self, IMP::Ints fit_comb)"""
2953  return _IMP_multifit.Ensemble_load_combination(self, fit_comb)
2954 
2955 
2956  def unload_combination(self, fit_comb):
2957  """unload_combination(Ensemble self, IMP::Ints fit_comb)"""
2958  return _IMP_multifit.Ensemble_unload_combination(self, fit_comb)
2959 
2960 
2961  def add_component_and_fits(self, mh, fits):
2962  """add_component_and_fits(Ensemble self, Hierarchy mh, IMP::multifit::FittingSolutionRecords const & fits)"""
2963  return _IMP_multifit.Ensemble_add_component_and_fits(self, mh, fits)
2964 
2965 
2966  def get_molecules(self):
2967  """get_molecules(Ensemble self) -> IMP::atom::Hierarchies"""
2968  return _IMP_multifit.Ensemble_get_molecules(self)
2969 
2970 
2971  def get_rigid_bodies(self):
2972  """get_rigid_bodies(Ensemble self) -> IMP::core::RigidBodies"""
2973  return _IMP_multifit.Ensemble_get_rigid_bodies(self)
2974 
2975 
2976  def get_rmsd(self, second_xyz):
2977  """get_rmsd(Ensemble self, IMP::core::XYZs const & second_xyz) -> float"""
2978  return _IMP_multifit.Ensemble_get_rmsd(self, second_xyz)
2979 
2980 
2981  def __init__(self, sd, mapping_data):
2982  """__init__(IMP::multifit::Ensemble self, SettingsData sd, ProteinsAnchorsSamplingSpace mapping_data) -> Ensemble"""
2983  this = _IMP_multifit.new_Ensemble(sd, mapping_data)
2984  try:
2985  self.this.append(this)
2986  except:
2987  self.this = this
2988 
2989  def score_by_restraints(self, rs, combinations):
2990  """score_by_restraints(Ensemble self, IMP::Restraints rs, IMP::IntsList const & combinations) -> std::vector< IMP::Floats,std::allocator< IMP::Floats > >"""
2991  return _IMP_multifit.Ensemble_score_by_restraints(self, rs, combinations)
2992 
2993 
2994  def get_version_info(self):
2995  """get_version_info(Ensemble self) -> VersionInfo"""
2996  return _IMP_multifit.Ensemble_get_version_info(self)
2997 
2998 
2999  def __str__(self):
3000  """__str__(Ensemble self) -> std::string"""
3001  return _IMP_multifit.Ensemble___str__(self)
3002 
3003 
3004  def __repr__(self):
3005  """__repr__(Ensemble self) -> std::string"""
3006  return _IMP_multifit.Ensemble___repr__(self)
3007 
3008 
3009  @staticmethod
3010  def get_from(o):
3011  return _object_cast_to_Ensemble(o)
3012 
3013 Ensemble_swigregister = _IMP_multifit.Ensemble_swigregister
3014 Ensemble_swigregister(Ensemble)
3015 
3016 
3017 def load_ensemble(sd, mdl, mapping_data):
3018  """load_ensemble(SettingsData sd, Model mdl, ProteinsAnchorsSamplingSpace mapping_data) -> Ensemble"""
3019  return _IMP_multifit.load_ensemble(sd, mdl, mapping_data)
3020 
3021 _all_commands = ["param", "anchors", "fit_fft", "cluster", "add_fit_rmsd",
3022  "indexes", "proteomics", "align", "models", "transforms",
3023  "score", "merge_tree", "reference", "refine_fft", "segment"]
3024 
3025 
3026 def get_module_version():
3027  """get_module_version() -> std::string const"""
3028  return _IMP_multifit.get_module_version()
3029 
3030 def get_example_path(fname):
3031  """get_example_path(std::string fname) -> std::string"""
3032  return _IMP_multifit.get_example_path(fname)
3033 
3034 def get_data_path(fname):
3035  """get_data_path(std::string fname) -> std::string"""
3036  return _IMP_multifit.get_data_path(fname)
3037 
3038 from . import _version_check
3039 _version_check.check_version(get_module_version())
3040 __version__ = get_module_version()
3041 
3042 
3043 
IMP::multifit::get_anchor_indices_matching_secondary_structure
IntsList get_anchor_indices_matching_secondary_structure(const AnchorsData &ad, const atom::SecondaryStructureResidues &ssrs, Float max_rmsd=0.7)
Get lists of anchors that match a sequence of secondary structures.
IMP::multifit::get_close_to_point
FittingSolutionRecords get_close_to_point(const FittingSolutionRecords &fit_sols, atom::Hierarchy mh, IMP::Particle *ap, Float dist)
prune solutions by distance to an anchor point
IMP::modeller::get_example_path
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
IMP::multifit::get_connected_components
IntsList get_connected_components(em::DensityMap *dmap, float threshold, float edge_threshold)
Return connected components based on density values.
IMP::container
Various classes to hold sets of particles.
IMP::cgal
Make CGAL functionality available to IMP.
IMP::multifit::remove_background
em::DensityMap * remove_background(em::DensityMap *dmap, float threshold, float edge_threshold)
Returns a map containing all density without the background.
IMP::multifit::get_part_of_sampling_space
ProteinsAnchorsSamplingSpace get_part_of_sampling_space(const ProteinsAnchorsSamplingSpace &prots_ss, const Strings &prot_names)
Get the sampling space of few of the proteins.
IMP::modeller::get_data_path
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
IMP::multifit::get_partial_assembly_setting_data
multifit::SettingsData * get_partial_assembly_setting_data(multifit::SettingsData *prots_sd, const Strings &prot_names)
Get the assembly data for a few of the proteins.
IMP::score_functor
Composable functors to implement scores via compile-time composition.
IMP::multifit::pca_based_rigid_fitting
em::FittingSolutions pca_based_rigid_fitting(core::RigidBody rb, Refiner *rb_refiner, em::DensityMap *em_map, Float threshold, FloatKey wei_key=atom::Mass::get_mass_key(), algebra::PrincipalComponentAnalysis dens_pca_input=algebra::PrincipalComponentAnalysis())
Compute fitting scores for a given set of rigid transformations.
IMP::statistics
Code to compute statistical measures.
IMP::multifit::add_surface_index
void add_surface_index(core::Hierarchy mhd, Float apix, FloatKey shell_key=FloatKey("surf_ind"), FloatKey radius_key=core::XYZR::get_radius_key(), FloatKey weight_key=atom::Mass::get_mass_key())
Add shell index to leaves.
IMP::domino::get_index
Ints get_index(const ParticlesTemp &particles, const Subset &subset, const Subsets &excluded)
IMP::Object
Common base class for heavy weight IMP objects.
Definition: Object.h:106
IMP::multifit::get_anchors_for_density
void get_anchors_for_density(em::DensityMap *dmap, int number_of_means, float density_threshold, std::string pdb_filename, std::string cmm_filename, std::string seg_filename, std::string txt_filename)
Generate anchors in several formats for a given density map.
IMP::algebra::get_rmsd
double get_rmsd(const Vector3DsOrXYZs0 &m1, const Vector3DsOrXYZs1 &m2)
Definition: algebra/distance.h:47
IMP::algebra::get_radius_of_gyration
double get_radius_of_gyration(const Vector3Ds &ps)
Return the radius of gyration of a set of points.
Definition: Vector3D.h:65
IMP::em
Basic utilities for handling cryo-electron microscopy 3D density maps.
IMP::multifit::write_fitting_solutions
void write_fitting_solutions(const char *fitting_fn, const FittingSolutionRecords &fit_sols, int num_sols=-1)
Write fitting solutions to a file.
IMP::multifit::read_proteomics_data
ProteomicsData * read_proteomics_data(const char *proteomics_fn)
Proteomics reader.
IMP::multifit::create_weighted_excluded_volume_restraint
IMP::Restraint * create_weighted_excluded_volume_restraint(core::RigidBody rb1, core::RigidBody rb2, FloatKey shell_key=FloatKey("surf_ind"))
Create a weighted excluded volume restraint between two rigid bodies.
IMP::multifit::get_points_close_to_molecule
algebra::Vector3Ds get_points_close_to_molecule(const atom::Hierarchy &mh, const algebra::Vector3Ds points, Float max_dist)
IMP::multifit::get_segmentation
void get_segmentation(em::DensityMap *dmap, double apix, double density_threshold, int num_means, const std::string pdb_filename, const std::string cmm_filename, const std::string seg_filename, const std::string txt_filename)
Segment a density map using the anchor graph.
IMP::multifit::write_connolly_surface
void write_connolly_surface(atom::Atoms atoms, TextOutput fn, float density, float probe_radius)
Write the Connolly surface for a set of atoms to a file.
IMP::core::show
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
Definition: core/Hierarchy.h:396
IMP::multifit::fft_based_rigid_fitting
multifit::FittingSolutionRecords fft_based_rigid_fitting(atom::Hierarchy mol2fit, em::DensityMap *dmap, double density_threshold, double angle_sampling_interval_rad)
FFT fit of a molecule in the density.
IMP::core
Basic functionality that is expected to be used by a wide variety of IMP users.
IMP::algebra
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
IMP::multifit::read_paths
IntsList read_paths(const char *txt_filename, int max_paths=INT_MAX)
Read paths.
IMP::multifit::read_fitting_solutions
FittingSolutionRecords read_fitting_solutions(const char *fitting_fn)
Fitting solutions reader.
IMP::atom::get_resolution
double get_resolution(Model *m, ParticleIndex pi)
Estimate the resolution of the hierarchy as used by Representation.
IMP::display
Output IMP model data in various file formats.
IMP::atom
Functionality for loading, creating, manipulating and scoring atomic structures.
IMP::rmf
Support for the RMF file format for storing hierarchical molecular data and markup.
IMP::domino
Divide-and-conquer inferential optimization in discrete space.
IMP::Restraint
A restraint is a term in an IMP ScoringFunction.
Definition: Restraint.h:52
IMP::multifit::create_coarse_molecule_from_density
atom::Hierarchy create_coarse_molecule_from_density(em::DensityMap *dmap, float dens_threshold, int num_beads, Model *mdl, float bead_radius)
Coarsen a density map based on voxels clustering.