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IMP Reference Guide  2.6.0
The Integrative Modeling Platform
foxs/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2016 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_foxs', [dirname(__file__)])
23  except ImportError:
24  import _IMP_foxs
25  return _IMP_foxs
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_foxs', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_foxs = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_foxs
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_FOXS_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_FOXS_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_foxs.delete_IMP_FOXS_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_FOXS_SwigPyIterator self) -> PyObject *"""
125  return _IMP_foxs.IMP_FOXS_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_FOXS_SwigPyIterator self, size_t n=1) -> IMP_FOXS_SwigPyIterator
131  incr(IMP_FOXS_SwigPyIterator self) -> IMP_FOXS_SwigPyIterator
132  """
133  return _IMP_foxs.IMP_FOXS_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_FOXS_SwigPyIterator self, size_t n=1) -> IMP_FOXS_SwigPyIterator
139  decr(IMP_FOXS_SwigPyIterator self) -> IMP_FOXS_SwigPyIterator
140  """
141  return _IMP_foxs.IMP_FOXS_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_FOXS_SwigPyIterator self, IMP_FOXS_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_foxs.IMP_FOXS_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_FOXS_SwigPyIterator self, IMP_FOXS_SwigPyIterator x) -> bool"""
151  return _IMP_foxs.IMP_FOXS_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_FOXS_SwigPyIterator self) -> IMP_FOXS_SwigPyIterator"""
156  return _IMP_foxs.IMP_FOXS_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_FOXS_SwigPyIterator self) -> PyObject *"""
161  return _IMP_foxs.IMP_FOXS_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_FOXS_SwigPyIterator self) -> PyObject *"""
166  return _IMP_foxs.IMP_FOXS_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_FOXS_SwigPyIterator self) -> PyObject *"""
171  return _IMP_foxs.IMP_FOXS_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_FOXS_SwigPyIterator self, ptrdiff_t n) -> IMP_FOXS_SwigPyIterator"""
176  return _IMP_foxs.IMP_FOXS_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_FOXS_SwigPyIterator self, IMP_FOXS_SwigPyIterator x) -> bool"""
181  return _IMP_foxs.IMP_FOXS_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_FOXS_SwigPyIterator self, IMP_FOXS_SwigPyIterator x) -> bool"""
186  return _IMP_foxs.IMP_FOXS_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_FOXS_SwigPyIterator self, ptrdiff_t n) -> IMP_FOXS_SwigPyIterator"""
191  return _IMP_foxs.IMP_FOXS_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_FOXS_SwigPyIterator self, ptrdiff_t n) -> IMP_FOXS_SwigPyIterator"""
196  return _IMP_foxs.IMP_FOXS_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_FOXS_SwigPyIterator self, ptrdiff_t n) -> IMP_FOXS_SwigPyIterator"""
201  return _IMP_foxs.IMP_FOXS_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_FOXS_SwigPyIterator self, ptrdiff_t n) -> IMP_FOXS_SwigPyIterator
207  __sub__(IMP_FOXS_SwigPyIterator self, IMP_FOXS_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_foxs.IMP_FOXS_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_FOXS_SwigPyIterator_swigregister = _IMP_foxs.IMP_FOXS_SwigPyIterator_swigregister
214 IMP_FOXS_SwigPyIterator_swigregister(IMP_FOXS_SwigPyIterator)
215 
216 
217 _value_types=[]
218 _object_types=[]
219 _raii_types=[]
220 _plural_types=[]
221 
222 
223 _IMP_foxs.IMP_DEBUG_swigconstant(_IMP_foxs)
224 IMP_DEBUG = _IMP_foxs.IMP_DEBUG
225 
226 _IMP_foxs.IMP_RELEASE_swigconstant(_IMP_foxs)
227 IMP_RELEASE = _IMP_foxs.IMP_RELEASE
228 
229 _IMP_foxs.IMP_SILENT_swigconstant(_IMP_foxs)
230 IMP_SILENT = _IMP_foxs.IMP_SILENT
231 
232 _IMP_foxs.IMP_PROGRESS_swigconstant(_IMP_foxs)
233 IMP_PROGRESS = _IMP_foxs.IMP_PROGRESS
234 
235 _IMP_foxs.IMP_TERSE_swigconstant(_IMP_foxs)
236 IMP_TERSE = _IMP_foxs.IMP_TERSE
237 
238 _IMP_foxs.IMP_VERBOSE_swigconstant(_IMP_foxs)
239 IMP_VERBOSE = _IMP_foxs.IMP_VERBOSE
240 
241 _IMP_foxs.IMP_MEMORY_swigconstant(_IMP_foxs)
242 IMP_MEMORY = _IMP_foxs.IMP_MEMORY
243 
244 _IMP_foxs.IMP_NONE_swigconstant(_IMP_foxs)
245 IMP_NONE = _IMP_foxs.IMP_NONE
246 
247 _IMP_foxs.IMP_USAGE_swigconstant(_IMP_foxs)
248 IMP_USAGE = _IMP_foxs.IMP_USAGE
249 
250 _IMP_foxs.IMP_INTERNAL_swigconstant(_IMP_foxs)
251 IMP_INTERNAL = _IMP_foxs.IMP_INTERNAL
252 
253 _IMP_foxs.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_foxs)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_foxs.IMP_KERNEL_HAS_LOG4CXX
255 
256 _IMP_foxs.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_foxs)
257 IMP_COMPILER_HAS_AUTO = _IMP_foxs.IMP_COMPILER_HAS_AUTO
258 
259 _IMP_foxs.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_foxs)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_foxs.IMP_COMPILER_HAS_DEBUG_VECTOR
261 
262 _IMP_foxs.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_foxs)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_foxs.IMP_COMPILER_HAS_UNIQUE_PTR
264 
265 _IMP_foxs.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_foxs.IMP_KERNEL_HAS_BOOST_RANDOM
267 
268 _IMP_foxs.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_foxs)
269 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_foxs.IMP_KERNEL_HAS_GPERFTOOLS
270 
271 _IMP_foxs.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_foxs)
272 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_foxs.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
273 
274 _IMP_foxs.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_foxs)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_foxs.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
276 
277 _IMP_foxs.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_foxs)
278 IMPKERNEL_SHOW_WARNINGS = _IMP_foxs.IMPKERNEL_SHOW_WARNINGS
279 
280 import sys
281 class _DirectorObjects(object):
282  """@internal Simple class to keep references to director objects
283  to prevent premature deletion."""
284  def __init__(self):
285  self._objects = []
286  def register(self, obj):
287  """Take a reference to a director object; will only work for
288  refcounted C++ classes"""
289  if hasattr(obj, 'get_ref_count'):
290  self._objects.append(obj)
291  def cleanup(self):
292  """Only drop our reference and allow cleanup by Python if no other
293  Python references exist (we hold 3 references: one in self._objects,
294  one in x, and one in the argument list for getrefcount) *and* no
295  other C++ references exist (the Python object always holds one)"""
296  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
297  or x.get_ref_count() > 1]
298 # Do in two steps so the references are kept until the end of the
299 # function (deleting references may trigger a fresh call to this method)
300  self._objects = objs
301  def get_object_count(self):
302  """Get number of director objects (useful for testing only)"""
303  return len(self._objects)
304 _director_objects = _DirectorObjects()
305 
306 class _ostream(object):
307  """Proxy of C++ std::ostream class"""
308  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
309 
310  def __init__(self, *args, **kwargs):
311  raise AttributeError("No constructor defined")
312  __repr__ = _swig_repr
313 
314  def write(self, osa_buf):
315  """write(_ostream self, char const * osa_buf)"""
316  return _IMP_foxs._ostream_write(self, osa_buf)
317 
318 _ostream_swigregister = _IMP_foxs._ostream_swigregister
319 _ostream_swigregister(_ostream)
320 
321 
322 _IMP_foxs.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_foxs)
323 IMP_COMPILER_HAS_OVERRIDE = _IMP_foxs.IMP_COMPILER_HAS_OVERRIDE
324 
325 _IMP_foxs.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_foxs)
326 IMP_COMPILER_HAS_FINAL = _IMP_foxs.IMP_COMPILER_HAS_FINAL
327 
328 _IMP_foxs.IMP_HAS_NOEXCEPT_swigconstant(_IMP_foxs)
329 IMP_HAS_NOEXCEPT = _IMP_foxs.IMP_HAS_NOEXCEPT
330 import IMP
331 
332 _IMP_foxs.IMP_BENCHMARK_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
333 IMP_BENCHMARK_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_BENCHMARK_HAS_BOOST_FILESYSTEM
334 
335 _IMP_foxs.IMP_BENCHMARK_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
336 IMP_BENCHMARK_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_BENCHMARK_HAS_BOOST_PROGRAMOPTIONS
337 
338 _IMP_foxs.IMP_BENCHMARK_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
339 IMP_BENCHMARK_HAS_BOOST_RANDOM = _IMP_foxs.IMP_BENCHMARK_HAS_BOOST_RANDOM
340 
341 _IMP_foxs.IMP_BENCHMARK_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
342 IMP_BENCHMARK_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_BENCHMARK_HAS_BOOST_SYSTEM
343 
344 _IMP_foxs.IMPBENCHMARK_SHOW_WARNINGS_swigconstant(_IMP_foxs)
345 IMPBENCHMARK_SHOW_WARNINGS = _IMP_foxs.IMPBENCHMARK_SHOW_WARNINGS
346 import IMP.benchmark
347 
348 _IMP_foxs.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
349 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_CGAL_HAS_BOOST_FILESYSTEM
350 
351 _IMP_foxs.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
352 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
353 
354 _IMP_foxs.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
355 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_foxs.IMP_CGAL_HAS_BOOST_RANDOM
356 
357 _IMP_foxs.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
358 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_CGAL_HAS_BOOST_SYSTEM
359 
360 _IMP_foxs.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_foxs)
361 IMPCGAL_SHOW_WARNINGS = _IMP_foxs.IMPCGAL_SHOW_WARNINGS
362 import IMP.cgal
363 
364 _IMP_foxs.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_foxs)
365 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_foxs.IMP_ALGEBRA_HAS_IMP_CGAL
366 
367 _IMP_foxs.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
368 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
369 
370 _IMP_foxs.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
371 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
372 
373 _IMP_foxs.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
374 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_foxs.IMP_ALGEBRA_HAS_BOOST_RANDOM
375 
376 _IMP_foxs.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
377 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_ALGEBRA_HAS_BOOST_SYSTEM
378 
379 _IMP_foxs.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_foxs)
380 IMP_ALGEBRA_HAS_CGAL = _IMP_foxs.IMP_ALGEBRA_HAS_CGAL
381 
382 _IMP_foxs.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_foxs)
383 IMP_ALGEBRA_HAS_ANN = _IMP_foxs.IMP_ALGEBRA_HAS_ANN
384 
385 _IMP_foxs.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_foxs)
386 IMPALGEBRA_SHOW_WARNINGS = _IMP_foxs.IMPALGEBRA_SHOW_WARNINGS
387 import IMP.algebra
388 
389 _IMP_foxs.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_foxs)
390 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_foxs.IMP_DISPLAY_HAS_IMP_CGAL
391 
392 _IMP_foxs.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
393 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
394 
395 _IMP_foxs.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
396 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
397 
398 _IMP_foxs.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
399 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_foxs.IMP_DISPLAY_HAS_BOOST_RANDOM
400 
401 _IMP_foxs.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
402 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_DISPLAY_HAS_BOOST_SYSTEM
403 
404 _IMP_foxs.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_foxs)
405 IMP_DISPLAY_HAS_CGAL = _IMP_foxs.IMP_DISPLAY_HAS_CGAL
406 
407 _IMP_foxs.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_foxs)
408 IMPDISPLAY_SHOW_WARNINGS = _IMP_foxs.IMPDISPLAY_SHOW_WARNINGS
409 import IMP.display
410 
411 _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_foxs)
412 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
413 
414 _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
415 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
416 
417 _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
418 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
419 
420 _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
421 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
422 
423 _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
424 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
425 
426 _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_foxs)
427 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_CGAL
428 
429 _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_foxs)
430 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_HDF5
431 
432 _IMP_foxs.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_foxs)
433 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_foxs.IMPSCOREFUNCTOR_SHOW_WARNINGS
434 import IMP.score_functor
435 
436 _IMP_foxs.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_foxs)
437 IMP_CORE_HAS_IMP_CGAL = _IMP_foxs.IMP_CORE_HAS_IMP_CGAL
438 
439 _IMP_foxs.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_foxs)
440 IMP_CORE_HAS_IMP_KERNEL = _IMP_foxs.IMP_CORE_HAS_IMP_KERNEL
441 
442 _IMP_foxs.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
443 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_CORE_HAS_BOOST_FILESYSTEM
444 
445 _IMP_foxs.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
446 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
447 
448 _IMP_foxs.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
449 IMP_CORE_HAS_BOOST_RANDOM = _IMP_foxs.IMP_CORE_HAS_BOOST_RANDOM
450 
451 _IMP_foxs.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
452 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_CORE_HAS_BOOST_SYSTEM
453 
454 _IMP_foxs.IMP_CORE_HAS_CGAL_swigconstant(_IMP_foxs)
455 IMP_CORE_HAS_CGAL = _IMP_foxs.IMP_CORE_HAS_CGAL
456 
457 _IMP_foxs.IMP_CORE_HAS_HDF5_swigconstant(_IMP_foxs)
458 IMP_CORE_HAS_HDF5 = _IMP_foxs.IMP_CORE_HAS_HDF5
459 
460 _IMP_foxs.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_foxs)
461 IMPCORE_SHOW_WARNINGS = _IMP_foxs.IMPCORE_SHOW_WARNINGS
462 import IMP.core
463 
464 _IMP_foxs.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_foxs)
465 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_foxs.IMP_CONTAINER_HAS_IMP_ALGEBRA
466 
467 _IMP_foxs.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_foxs)
468 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_foxs.IMP_CONTAINER_HAS_IMP_CGAL
469 
470 _IMP_foxs.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_foxs)
471 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_foxs.IMP_CONTAINER_HAS_IMP_DISPLAY
472 
473 _IMP_foxs.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_foxs)
474 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_foxs.IMP_CONTAINER_HAS_IMP_KERNEL
475 
476 _IMP_foxs.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_foxs)
477 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_foxs.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
478 
479 _IMP_foxs.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
480 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
481 
482 _IMP_foxs.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
483 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
484 
485 _IMP_foxs.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
486 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_foxs.IMP_CONTAINER_HAS_BOOST_RANDOM
487 
488 _IMP_foxs.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
489 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_CONTAINER_HAS_BOOST_SYSTEM
490 
491 _IMP_foxs.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_foxs)
492 IMP_CONTAINER_HAS_CGAL = _IMP_foxs.IMP_CONTAINER_HAS_CGAL
493 
494 _IMP_foxs.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_foxs)
495 IMP_CONTAINER_HAS_HDF5 = _IMP_foxs.IMP_CONTAINER_HAS_HDF5
496 
497 _IMP_foxs.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_foxs)
498 IMPCONTAINER_SHOW_WARNINGS = _IMP_foxs.IMPCONTAINER_SHOW_WARNINGS
499 import IMP.container
500 
501 _IMP_foxs.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_foxs)
502 IMP_ATOM_HAS_IMP_CGAL = _IMP_foxs.IMP_ATOM_HAS_IMP_CGAL
503 
504 _IMP_foxs.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_foxs)
505 IMP_ATOM_HAS_IMP_KERNEL = _IMP_foxs.IMP_ATOM_HAS_IMP_KERNEL
506 
507 _IMP_foxs.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_foxs)
508 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_foxs.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
509 
510 _IMP_foxs.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
511 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
512 
513 _IMP_foxs.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
514 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_foxs.IMP_ATOM_HAS_BOOST_RANDOM
515 
516 _IMP_foxs.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_foxs)
517 IMP_ATOM_HAS_BOOST_REGEX = _IMP_foxs.IMP_ATOM_HAS_BOOST_REGEX
518 
519 _IMP_foxs.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
520 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_ATOM_HAS_BOOST_SYSTEM
521 
522 _IMP_foxs.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_foxs)
523 IMP_ATOM_HAS_CGAL = _IMP_foxs.IMP_ATOM_HAS_CGAL
524 
525 _IMP_foxs.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_foxs)
526 IMP_ATOM_HAS_HDF5 = _IMP_foxs.IMP_ATOM_HAS_HDF5
527 
528 _IMP_foxs.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_foxs)
529 IMPATOM_SHOW_WARNINGS = _IMP_foxs.IMPATOM_SHOW_WARNINGS
530 
531 _IMP_foxs.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_foxs)
532 IMP_ATOM_TYPE_INDEX = _IMP_foxs.IMP_ATOM_TYPE_INDEX
533 
534 _IMP_foxs.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_foxs)
535 IMP_RESIDUE_TYPE_INDEX = _IMP_foxs.IMP_RESIDUE_TYPE_INDEX
536 
537 _IMP_foxs.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_foxs)
538 IMP_HIERARCHY_TYPE_INDEX = _IMP_foxs.IMP_HIERARCHY_TYPE_INDEX
539 import IMP.atom
540 
541 _IMP_foxs.IMP_SAXS_HAS_IMP_CGAL_swigconstant(_IMP_foxs)
542 IMP_SAXS_HAS_IMP_CGAL = _IMP_foxs.IMP_SAXS_HAS_IMP_CGAL
543 
544 _IMP_foxs.IMP_SAXS_HAS_IMP_CONTAINER_swigconstant(_IMP_foxs)
545 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_foxs.IMP_SAXS_HAS_IMP_CONTAINER
546 
547 _IMP_foxs.IMP_SAXS_HAS_IMP_DISPLAY_swigconstant(_IMP_foxs)
548 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_foxs.IMP_SAXS_HAS_IMP_DISPLAY
549 
550 _IMP_foxs.IMP_SAXS_HAS_IMP_KERNEL_swigconstant(_IMP_foxs)
551 IMP_SAXS_HAS_IMP_KERNEL = _IMP_foxs.IMP_SAXS_HAS_IMP_KERNEL
552 
553 _IMP_foxs.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_foxs)
554 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_foxs.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
555 
556 _IMP_foxs.IMP_SAXS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
557 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_SAXS_HAS_BOOST_FILESYSTEM
558 
559 _IMP_foxs.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
560 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
561 
562 _IMP_foxs.IMP_SAXS_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
563 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_foxs.IMP_SAXS_HAS_BOOST_RANDOM
564 
565 _IMP_foxs.IMP_SAXS_HAS_BOOST_REGEX_swigconstant(_IMP_foxs)
566 IMP_SAXS_HAS_BOOST_REGEX = _IMP_foxs.IMP_SAXS_HAS_BOOST_REGEX
567 
568 _IMP_foxs.IMP_SAXS_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
569 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_SAXS_HAS_BOOST_SYSTEM
570 
571 _IMP_foxs.IMP_SAXS_HAS_CGAL_swigconstant(_IMP_foxs)
572 IMP_SAXS_HAS_CGAL = _IMP_foxs.IMP_SAXS_HAS_CGAL
573 
574 _IMP_foxs.IMP_SAXS_HAS_HDF5_swigconstant(_IMP_foxs)
575 IMP_SAXS_HAS_HDF5 = _IMP_foxs.IMP_SAXS_HAS_HDF5
576 
577 _IMP_foxs.IMPSAXS_SHOW_WARNINGS_swigconstant(_IMP_foxs)
578 IMPSAXS_SHOW_WARNINGS = _IMP_foxs.IMPSAXS_SHOW_WARNINGS
579 import IMP.saxs
580 
581 _IMP_foxs.IMP_FOXS_HAS_IMP_CGAL_swigconstant(_IMP_foxs)
582 IMP_FOXS_HAS_IMP_CGAL = _IMP_foxs.IMP_FOXS_HAS_IMP_CGAL
583 
584 _IMP_foxs.IMP_FOXS_HAS_IMP_CONTAINER_swigconstant(_IMP_foxs)
585 IMP_FOXS_HAS_IMP_CONTAINER = _IMP_foxs.IMP_FOXS_HAS_IMP_CONTAINER
586 
587 _IMP_foxs.IMP_FOXS_HAS_IMP_DISPLAY_swigconstant(_IMP_foxs)
588 IMP_FOXS_HAS_IMP_DISPLAY = _IMP_foxs.IMP_FOXS_HAS_IMP_DISPLAY
589 
590 _IMP_foxs.IMP_FOXS_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_foxs)
591 IMP_FOXS_HAS_IMP_SCORE_FUNCTOR = _IMP_foxs.IMP_FOXS_HAS_IMP_SCORE_FUNCTOR
592 
593 _IMP_foxs.IMP_FOXS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
594 IMP_FOXS_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_FOXS_HAS_BOOST_FILESYSTEM
595 
596 _IMP_foxs.IMP_FOXS_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
597 IMP_FOXS_HAS_BOOST_RANDOM = _IMP_foxs.IMP_FOXS_HAS_BOOST_RANDOM
598 
599 _IMP_foxs.IMP_FOXS_HAS_BOOST_REGEX_swigconstant(_IMP_foxs)
600 IMP_FOXS_HAS_BOOST_REGEX = _IMP_foxs.IMP_FOXS_HAS_BOOST_REGEX
601 
602 _IMP_foxs.IMP_FOXS_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
603 IMP_FOXS_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_FOXS_HAS_BOOST_SYSTEM
604 
605 _IMP_foxs.IMP_FOXS_HAS_CGAL_swigconstant(_IMP_foxs)
606 IMP_FOXS_HAS_CGAL = _IMP_foxs.IMP_FOXS_HAS_CGAL
607 
608 _IMP_foxs.IMP_FOXS_HAS_HDF5_swigconstant(_IMP_foxs)
609 IMP_FOXS_HAS_HDF5 = _IMP_foxs.IMP_FOXS_HAS_HDF5
610 
611 _IMP_foxs.IMPFOXS_SHOW_WARNINGS_swigconstant(_IMP_foxs)
612 IMPFOXS_SHOW_WARNINGS = _IMP_foxs.IMPFOXS_SHOW_WARNINGS
613 
614 def get_module_version():
615  """get_module_version() -> std::string const"""
616  return _IMP_foxs.get_module_version()
617 
618 def get_example_path(fname):
619  """get_example_path(std::string fname) -> std::string"""
620  return _IMP_foxs.get_example_path(fname)
621 
622 def get_data_path(fname):
623  """get_data_path(std::string fname) -> std::string"""
624  return _IMP_foxs.get_data_path(fname)
625 
626 from . import _version_check
627 _version_check.check_version(get_module_version())
628 __version__ = get_module_version()
629 
630 
631 
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
Composable functors to implement scores via compile-time composition.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
Support for developing and analyzing benchmarks of IMP code.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Support for small angle X-ray scattering (SAXS) data.