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IMP Reference Guide  2.6.0
The Integrative Modeling Platform
domino/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2016 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_domino', [dirname(__file__)])
23  except ImportError:
24  import _IMP_domino
25  return _IMP_domino
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_domino', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_domino = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_domino
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_DOMINO_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_DOMINO_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_domino.delete_IMP_DOMINO_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_DOMINO_SwigPyIterator self) -> PyObject *"""
125  return _IMP_domino.IMP_DOMINO_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_DOMINO_SwigPyIterator self, size_t n=1) -> IMP_DOMINO_SwigPyIterator
131  incr(IMP_DOMINO_SwigPyIterator self) -> IMP_DOMINO_SwigPyIterator
132  """
133  return _IMP_domino.IMP_DOMINO_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_DOMINO_SwigPyIterator self, size_t n=1) -> IMP_DOMINO_SwigPyIterator
139  decr(IMP_DOMINO_SwigPyIterator self) -> IMP_DOMINO_SwigPyIterator
140  """
141  return _IMP_domino.IMP_DOMINO_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_DOMINO_SwigPyIterator self, IMP_DOMINO_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_domino.IMP_DOMINO_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_DOMINO_SwigPyIterator self, IMP_DOMINO_SwigPyIterator x) -> bool"""
151  return _IMP_domino.IMP_DOMINO_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_DOMINO_SwigPyIterator self) -> IMP_DOMINO_SwigPyIterator"""
156  return _IMP_domino.IMP_DOMINO_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_DOMINO_SwigPyIterator self) -> PyObject *"""
161  return _IMP_domino.IMP_DOMINO_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_DOMINO_SwigPyIterator self) -> PyObject *"""
166  return _IMP_domino.IMP_DOMINO_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_DOMINO_SwigPyIterator self) -> PyObject *"""
171  return _IMP_domino.IMP_DOMINO_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_DOMINO_SwigPyIterator self, ptrdiff_t n) -> IMP_DOMINO_SwigPyIterator"""
176  return _IMP_domino.IMP_DOMINO_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_DOMINO_SwigPyIterator self, IMP_DOMINO_SwigPyIterator x) -> bool"""
181  return _IMP_domino.IMP_DOMINO_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_DOMINO_SwigPyIterator self, IMP_DOMINO_SwigPyIterator x) -> bool"""
186  return _IMP_domino.IMP_DOMINO_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_DOMINO_SwigPyIterator self, ptrdiff_t n) -> IMP_DOMINO_SwigPyIterator"""
191  return _IMP_domino.IMP_DOMINO_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_DOMINO_SwigPyIterator self, ptrdiff_t n) -> IMP_DOMINO_SwigPyIterator"""
196  return _IMP_domino.IMP_DOMINO_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_DOMINO_SwigPyIterator self, ptrdiff_t n) -> IMP_DOMINO_SwigPyIterator"""
201  return _IMP_domino.IMP_DOMINO_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_DOMINO_SwigPyIterator self, ptrdiff_t n) -> IMP_DOMINO_SwigPyIterator
207  __sub__(IMP_DOMINO_SwigPyIterator self, IMP_DOMINO_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_domino.IMP_DOMINO_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_DOMINO_SwigPyIterator_swigregister = _IMP_domino.IMP_DOMINO_SwigPyIterator_swigregister
214 IMP_DOMINO_SwigPyIterator_swigregister(IMP_DOMINO_SwigPyIterator)
215 
216 
217 _value_types=[]
218 _object_types=[]
219 _raii_types=[]
220 _plural_types=[]
221 
222 
223 _IMP_domino.IMP_DEBUG_swigconstant(_IMP_domino)
224 IMP_DEBUG = _IMP_domino.IMP_DEBUG
225 
226 _IMP_domino.IMP_RELEASE_swigconstant(_IMP_domino)
227 IMP_RELEASE = _IMP_domino.IMP_RELEASE
228 
229 _IMP_domino.IMP_SILENT_swigconstant(_IMP_domino)
230 IMP_SILENT = _IMP_domino.IMP_SILENT
231 
232 _IMP_domino.IMP_PROGRESS_swigconstant(_IMP_domino)
233 IMP_PROGRESS = _IMP_domino.IMP_PROGRESS
234 
235 _IMP_domino.IMP_TERSE_swigconstant(_IMP_domino)
236 IMP_TERSE = _IMP_domino.IMP_TERSE
237 
238 _IMP_domino.IMP_VERBOSE_swigconstant(_IMP_domino)
239 IMP_VERBOSE = _IMP_domino.IMP_VERBOSE
240 
241 _IMP_domino.IMP_MEMORY_swigconstant(_IMP_domino)
242 IMP_MEMORY = _IMP_domino.IMP_MEMORY
243 
244 _IMP_domino.IMP_NONE_swigconstant(_IMP_domino)
245 IMP_NONE = _IMP_domino.IMP_NONE
246 
247 _IMP_domino.IMP_USAGE_swigconstant(_IMP_domino)
248 IMP_USAGE = _IMP_domino.IMP_USAGE
249 
250 _IMP_domino.IMP_INTERNAL_swigconstant(_IMP_domino)
251 IMP_INTERNAL = _IMP_domino.IMP_INTERNAL
252 
253 _IMP_domino.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_domino)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_domino.IMP_KERNEL_HAS_LOG4CXX
255 
256 _IMP_domino.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_domino)
257 IMP_COMPILER_HAS_AUTO = _IMP_domino.IMP_COMPILER_HAS_AUTO
258 
259 _IMP_domino.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_domino)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_domino.IMP_COMPILER_HAS_DEBUG_VECTOR
261 
262 _IMP_domino.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_domino)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_domino.IMP_COMPILER_HAS_UNIQUE_PTR
264 
265 _IMP_domino.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_domino)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_domino.IMP_KERNEL_HAS_BOOST_RANDOM
267 
268 _IMP_domino.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_domino)
269 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_domino.IMP_KERNEL_HAS_GPERFTOOLS
270 
271 _IMP_domino.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_domino)
272 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_domino.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
273 
274 _IMP_domino.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_domino)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_domino.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
276 
277 _IMP_domino.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_domino)
278 IMPKERNEL_SHOW_WARNINGS = _IMP_domino.IMPKERNEL_SHOW_WARNINGS
279 
280 import sys
281 class _DirectorObjects(object):
282  """@internal Simple class to keep references to director objects
283  to prevent premature deletion."""
284  def __init__(self):
285  self._objects = []
286  def register(self, obj):
287  """Take a reference to a director object; will only work for
288  refcounted C++ classes"""
289  if hasattr(obj, 'get_ref_count'):
290  self._objects.append(obj)
291  def cleanup(self):
292  """Only drop our reference and allow cleanup by Python if no other
293  Python references exist (we hold 3 references: one in self._objects,
294  one in x, and one in the argument list for getrefcount) *and* no
295  other C++ references exist (the Python object always holds one)"""
296  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
297  or x.get_ref_count() > 1]
298 # Do in two steps so the references are kept until the end of the
299 # function (deleting references may trigger a fresh call to this method)
300  self._objects = objs
301  def get_object_count(self):
302  """Get number of director objects (useful for testing only)"""
303  return len(self._objects)
304 _director_objects = _DirectorObjects()
305 
306 class _ostream(object):
307  """Proxy of C++ std::ostream class"""
308  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
309 
310  def __init__(self, *args, **kwargs):
311  raise AttributeError("No constructor defined")
312  __repr__ = _swig_repr
313 
314  def write(self, osa_buf):
315  """write(_ostream self, char const * osa_buf)"""
316  return _IMP_domino._ostream_write(self, osa_buf)
317 
318 _ostream_swigregister = _IMP_domino._ostream_swigregister
319 _ostream_swigregister(_ostream)
320 
321 
322 _IMP_domino.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_domino)
323 IMP_COMPILER_HAS_OVERRIDE = _IMP_domino.IMP_COMPILER_HAS_OVERRIDE
324 
325 _IMP_domino.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_domino)
326 IMP_COMPILER_HAS_FINAL = _IMP_domino.IMP_COMPILER_HAS_FINAL
327 
328 _IMP_domino.IMP_HAS_NOEXCEPT_swigconstant(_IMP_domino)
329 IMP_HAS_NOEXCEPT = _IMP_domino.IMP_HAS_NOEXCEPT
330 import IMP
331 
332 _IMP_domino.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_domino)
333 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_domino.IMP_CGAL_HAS_BOOST_FILESYSTEM
334 
335 _IMP_domino.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_domino)
336 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_domino.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
337 
338 _IMP_domino.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_domino)
339 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_domino.IMP_CGAL_HAS_BOOST_RANDOM
340 
341 _IMP_domino.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_domino)
342 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_domino.IMP_CGAL_HAS_BOOST_SYSTEM
343 
344 _IMP_domino.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_domino)
345 IMPCGAL_SHOW_WARNINGS = _IMP_domino.IMPCGAL_SHOW_WARNINGS
346 import IMP.cgal
347 
348 _IMP_domino.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_domino)
349 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_domino.IMP_ALGEBRA_HAS_IMP_CGAL
350 
351 _IMP_domino.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_domino)
352 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_domino.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
353 
354 _IMP_domino.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_domino)
355 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_domino.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
356 
357 _IMP_domino.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_domino)
358 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_domino.IMP_ALGEBRA_HAS_BOOST_RANDOM
359 
360 _IMP_domino.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_domino)
361 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_domino.IMP_ALGEBRA_HAS_BOOST_SYSTEM
362 
363 _IMP_domino.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_domino)
364 IMP_ALGEBRA_HAS_CGAL = _IMP_domino.IMP_ALGEBRA_HAS_CGAL
365 
366 _IMP_domino.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_domino)
367 IMP_ALGEBRA_HAS_ANN = _IMP_domino.IMP_ALGEBRA_HAS_ANN
368 
369 _IMP_domino.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_domino)
370 IMPALGEBRA_SHOW_WARNINGS = _IMP_domino.IMPALGEBRA_SHOW_WARNINGS
371 import IMP.algebra
372 
373 _IMP_domino.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_domino)
374 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_domino.IMP_DISPLAY_HAS_IMP_CGAL
375 
376 _IMP_domino.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_domino)
377 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_domino.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
378 
379 _IMP_domino.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_domino)
380 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_domino.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
381 
382 _IMP_domino.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_domino)
383 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_domino.IMP_DISPLAY_HAS_BOOST_RANDOM
384 
385 _IMP_domino.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_domino)
386 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_domino.IMP_DISPLAY_HAS_BOOST_SYSTEM
387 
388 _IMP_domino.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_domino)
389 IMP_DISPLAY_HAS_CGAL = _IMP_domino.IMP_DISPLAY_HAS_CGAL
390 
391 _IMP_domino.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_domino)
392 IMPDISPLAY_SHOW_WARNINGS = _IMP_domino.IMPDISPLAY_SHOW_WARNINGS
393 import IMP.display
394 
395 _IMP_domino.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_domino)
396 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_domino.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
397 
398 _IMP_domino.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_domino)
399 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_domino.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
400 
401 _IMP_domino.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_domino)
402 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_domino.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
403 
404 _IMP_domino.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_domino)
405 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_domino.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
406 
407 _IMP_domino.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_domino)
408 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_domino.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
409 
410 _IMP_domino.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_domino)
411 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_domino.IMP_SCORE_FUNCTOR_HAS_CGAL
412 
413 _IMP_domino.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_domino)
414 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_domino.IMP_SCORE_FUNCTOR_HAS_HDF5
415 
416 _IMP_domino.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_domino)
417 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_domino.IMPSCOREFUNCTOR_SHOW_WARNINGS
418 import IMP.score_functor
419 
420 _IMP_domino.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_domino)
421 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_domino.IMP_STATISTICS_HAS_IMP_CGAL
422 
423 _IMP_domino.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_domino)
424 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_domino.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
425 
426 _IMP_domino.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_domino)
427 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_domino.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
428 
429 _IMP_domino.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_domino)
430 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_domino.IMP_STATISTICS_HAS_BOOST_RANDOM
431 
432 _IMP_domino.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_domino)
433 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_domino.IMP_STATISTICS_HAS_BOOST_SYSTEM
434 
435 _IMP_domino.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_domino)
436 IMP_STATISTICS_HAS_CGAL = _IMP_domino.IMP_STATISTICS_HAS_CGAL
437 
438 _IMP_domino.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_domino)
439 IMPSTATISTICS_SHOW_WARNINGS = _IMP_domino.IMPSTATISTICS_SHOW_WARNINGS
440 import IMP.statistics
441 
442 _IMP_domino.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_domino)
443 IMP_CORE_HAS_IMP_CGAL = _IMP_domino.IMP_CORE_HAS_IMP_CGAL
444 
445 _IMP_domino.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_domino)
446 IMP_CORE_HAS_IMP_KERNEL = _IMP_domino.IMP_CORE_HAS_IMP_KERNEL
447 
448 _IMP_domino.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_domino)
449 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_domino.IMP_CORE_HAS_BOOST_FILESYSTEM
450 
451 _IMP_domino.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_domino)
452 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_domino.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
453 
454 _IMP_domino.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_domino)
455 IMP_CORE_HAS_BOOST_RANDOM = _IMP_domino.IMP_CORE_HAS_BOOST_RANDOM
456 
457 _IMP_domino.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_domino)
458 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_domino.IMP_CORE_HAS_BOOST_SYSTEM
459 
460 _IMP_domino.IMP_CORE_HAS_CGAL_swigconstant(_IMP_domino)
461 IMP_CORE_HAS_CGAL = _IMP_domino.IMP_CORE_HAS_CGAL
462 
463 _IMP_domino.IMP_CORE_HAS_HDF5_swigconstant(_IMP_domino)
464 IMP_CORE_HAS_HDF5 = _IMP_domino.IMP_CORE_HAS_HDF5
465 
466 _IMP_domino.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_domino)
467 IMPCORE_SHOW_WARNINGS = _IMP_domino.IMPCORE_SHOW_WARNINGS
468 import IMP.core
469 
470 _IMP_domino.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_domino)
471 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_domino.IMP_CONTAINER_HAS_IMP_ALGEBRA
472 
473 _IMP_domino.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_domino)
474 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_domino.IMP_CONTAINER_HAS_IMP_CGAL
475 
476 _IMP_domino.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_domino)
477 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_domino.IMP_CONTAINER_HAS_IMP_DISPLAY
478 
479 _IMP_domino.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_domino)
480 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_domino.IMP_CONTAINER_HAS_IMP_KERNEL
481 
482 _IMP_domino.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_domino)
483 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_domino.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
484 
485 _IMP_domino.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_domino)
486 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_domino.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
487 
488 _IMP_domino.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_domino)
489 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_domino.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
490 
491 _IMP_domino.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_domino)
492 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_domino.IMP_CONTAINER_HAS_BOOST_RANDOM
493 
494 _IMP_domino.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_domino)
495 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_domino.IMP_CONTAINER_HAS_BOOST_SYSTEM
496 
497 _IMP_domino.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_domino)
498 IMP_CONTAINER_HAS_CGAL = _IMP_domino.IMP_CONTAINER_HAS_CGAL
499 
500 _IMP_domino.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_domino)
501 IMP_CONTAINER_HAS_HDF5 = _IMP_domino.IMP_CONTAINER_HAS_HDF5
502 
503 _IMP_domino.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_domino)
504 IMPCONTAINER_SHOW_WARNINGS = _IMP_domino.IMPCONTAINER_SHOW_WARNINGS
505 import IMP.container
506 
507 _IMP_domino.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_domino)
508 IMP_ATOM_HAS_IMP_CGAL = _IMP_domino.IMP_ATOM_HAS_IMP_CGAL
509 
510 _IMP_domino.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_domino)
511 IMP_ATOM_HAS_IMP_KERNEL = _IMP_domino.IMP_ATOM_HAS_IMP_KERNEL
512 
513 _IMP_domino.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_domino)
514 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_domino.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
515 
516 _IMP_domino.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_domino)
517 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_domino.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
518 
519 _IMP_domino.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_domino)
520 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_domino.IMP_ATOM_HAS_BOOST_RANDOM
521 
522 _IMP_domino.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_domino)
523 IMP_ATOM_HAS_BOOST_REGEX = _IMP_domino.IMP_ATOM_HAS_BOOST_REGEX
524 
525 _IMP_domino.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_domino)
526 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_domino.IMP_ATOM_HAS_BOOST_SYSTEM
527 
528 _IMP_domino.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_domino)
529 IMP_ATOM_HAS_CGAL = _IMP_domino.IMP_ATOM_HAS_CGAL
530 
531 _IMP_domino.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_domino)
532 IMP_ATOM_HAS_HDF5 = _IMP_domino.IMP_ATOM_HAS_HDF5
533 
534 _IMP_domino.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_domino)
535 IMPATOM_SHOW_WARNINGS = _IMP_domino.IMPATOM_SHOW_WARNINGS
536 
537 _IMP_domino.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_domino)
538 IMP_ATOM_TYPE_INDEX = _IMP_domino.IMP_ATOM_TYPE_INDEX
539 
540 _IMP_domino.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_domino)
541 IMP_RESIDUE_TYPE_INDEX = _IMP_domino.IMP_RESIDUE_TYPE_INDEX
542 
543 _IMP_domino.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_domino)
544 IMP_HIERARCHY_TYPE_INDEX = _IMP_domino.IMP_HIERARCHY_TYPE_INDEX
545 import IMP.atom
546 
547 _IMP_domino.IMP_RMF_HAS_IMP_CGAL_swigconstant(_IMP_domino)
548 IMP_RMF_HAS_IMP_CGAL = _IMP_domino.IMP_RMF_HAS_IMP_CGAL
549 
550 _IMP_domino.IMP_RMF_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_domino)
551 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_domino.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
552 
553 _IMP_domino.IMP_RMF_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_domino)
554 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_domino.IMP_RMF_HAS_BOOST_FILESYSTEM
555 
556 _IMP_domino.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_domino)
557 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_domino.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
558 
559 _IMP_domino.IMP_RMF_HAS_BOOST_RANDOM_swigconstant(_IMP_domino)
560 IMP_RMF_HAS_BOOST_RANDOM = _IMP_domino.IMP_RMF_HAS_BOOST_RANDOM
561 
562 _IMP_domino.IMP_RMF_HAS_BOOST_REGEX_swigconstant(_IMP_domino)
563 IMP_RMF_HAS_BOOST_REGEX = _IMP_domino.IMP_RMF_HAS_BOOST_REGEX
564 
565 _IMP_domino.IMP_RMF_HAS_BOOST_SYSTEM_swigconstant(_IMP_domino)
566 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_domino.IMP_RMF_HAS_BOOST_SYSTEM
567 
568 _IMP_domino.IMP_RMF_HAS_CGAL_swigconstant(_IMP_domino)
569 IMP_RMF_HAS_CGAL = _IMP_domino.IMP_RMF_HAS_CGAL
570 
571 _IMP_domino.IMP_RMF_HAS_HDF5_swigconstant(_IMP_domino)
572 IMP_RMF_HAS_HDF5 = _IMP_domino.IMP_RMF_HAS_HDF5
573 
574 _IMP_domino.IMPRMF_SHOW_WARNINGS_swigconstant(_IMP_domino)
575 IMPRMF_SHOW_WARNINGS = _IMP_domino.IMPRMF_SHOW_WARNINGS
576 import IMP.rmf
577 import RMF
578 
579 _IMP_domino.IMP_DOMINO_HAS_IMP_ATOM_swigconstant(_IMP_domino)
580 IMP_DOMINO_HAS_IMP_ATOM = _IMP_domino.IMP_DOMINO_HAS_IMP_ATOM
581 
582 _IMP_domino.IMP_DOMINO_HAS_IMP_CGAL_swigconstant(_IMP_domino)
583 IMP_DOMINO_HAS_IMP_CGAL = _IMP_domino.IMP_DOMINO_HAS_IMP_CGAL
584 
585 _IMP_domino.IMP_DOMINO_HAS_IMP_KERNEL_swigconstant(_IMP_domino)
586 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_domino.IMP_DOMINO_HAS_IMP_KERNEL
587 
588 _IMP_domino.IMP_DOMINO_HAS_IMP_RMF_swigconstant(_IMP_domino)
589 IMP_DOMINO_HAS_IMP_RMF = _IMP_domino.IMP_DOMINO_HAS_IMP_RMF
590 
591 _IMP_domino.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_domino)
592 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_domino.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
593 
594 _IMP_domino.IMP_DOMINO_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_domino)
595 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_domino.IMP_DOMINO_HAS_BOOST_FILESYSTEM
596 
597 _IMP_domino.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_domino)
598 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_domino.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
599 
600 _IMP_domino.IMP_DOMINO_HAS_BOOST_RANDOM_swigconstant(_IMP_domino)
601 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_domino.IMP_DOMINO_HAS_BOOST_RANDOM
602 
603 _IMP_domino.IMP_DOMINO_HAS_BOOST_REGEX_swigconstant(_IMP_domino)
604 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_domino.IMP_DOMINO_HAS_BOOST_REGEX
605 
606 _IMP_domino.IMP_DOMINO_HAS_BOOST_SYSTEM_swigconstant(_IMP_domino)
607 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_domino.IMP_DOMINO_HAS_BOOST_SYSTEM
608 
609 _IMP_domino.IMP_DOMINO_HAS_CGAL_swigconstant(_IMP_domino)
610 IMP_DOMINO_HAS_CGAL = _IMP_domino.IMP_DOMINO_HAS_CGAL
611 
612 _IMP_domino.IMP_DOMINO_HAS_HDF5_swigconstant(_IMP_domino)
613 IMP_DOMINO_HAS_HDF5 = _IMP_domino.IMP_DOMINO_HAS_HDF5
614 
615 _IMP_domino.IMP_DOMINO_HAS_RMF_swigconstant(_IMP_domino)
616 IMP_DOMINO_HAS_RMF = _IMP_domino.IMP_DOMINO_HAS_RMF
617 
618 _IMP_domino.IMPDOMINO_SHOW_WARNINGS_swigconstant(_IMP_domino)
619 IMPDOMINO_SHOW_WARNINGS = _IMP_domino.IMPDOMINO_SHOW_WARNINGS
620 import RMF_HDF5
621 
622 _object_types.append("DiscreteSampler")
623 
624 
625 def _object_cast_to_DiscreteSampler(o):
626  """_object_cast_to_DiscreteSampler(Object o) -> DiscreteSampler"""
627  return _IMP_domino._object_cast_to_DiscreteSampler(o)
628 
629 _object_types.append("ParticleStates")
630 
631 
632 def _object_cast_to_ParticleStates(o):
633  """_object_cast_to_ParticleStates(Object o) -> ParticleStates"""
634  return _IMP_domino._object_cast_to_ParticleStates(o)
635 
636 _object_types.append("SubsetFilter")
637 
638 
639 def _object_cast_to_SubsetFilter(o):
640  """_object_cast_to_SubsetFilter(Object o) -> SubsetFilter"""
641  return _IMP_domino._object_cast_to_SubsetFilter(o)
642 
643 _object_types.append("SubsetFilterTable")
644 
645 
646 def _object_cast_to_SubsetFilterTable(o):
647  """_object_cast_to_SubsetFilterTable(Object o) -> SubsetFilterTable"""
648  return _IMP_domino._object_cast_to_SubsetFilterTable(o)
649 
650 _object_types.append("AssignmentsTable")
651 
652 
653 def _object_cast_to_AssignmentsTable(o):
654  """_object_cast_to_AssignmentsTable(Object o) -> AssignmentsTable"""
655  return _IMP_domino._object_cast_to_AssignmentsTable(o)
656 
657 _object_types.append("AssignmentContainer")
658 
659 
660 def _object_cast_to_AssignmentContainer(o):
661  """_object_cast_to_AssignmentContainer(Object o) -> AssignmentContainer"""
662  return _IMP_domino._object_cast_to_AssignmentContainer(o)
664  """Proxy of C++ IMP::internal::BoostDigraph<(IMP::domino::InteractionGraph,p.IMP::Particle,IMP::domino::ShowInteractionGraphVertex)> class"""
665  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
666  __repr__ = _swig_repr
667 
668  def __init__(self):
669  """__init__(IMP::internal::BoostDigraph<(IMP::domino::InteractionGraph,p.IMP::Particle,IMP::domino::ShowInteractionGraphVertex)> self) -> InteractionGraph"""
670  this = _IMP_domino.new_InteractionGraph()
671  try:
672  self.this.append(this)
673  except:
674  self.this = this
675 
676  def get_graph(self):
677  """get_graph(InteractionGraph self) -> IMP::domino::InteractionGraph const &"""
678  return _IMP_domino.InteractionGraph_get_graph(self)
679 
680 
681  def get_vertices(self):
682  """get_vertices(InteractionGraph self) -> IMP::internal::BoostDigraph< IMP::domino::InteractionGraph,IMP::Particle *,IMP::domino::ShowInteractionGraphVertex >::VertexDescriptors"""
683  return _IMP_domino.InteractionGraph_get_vertices(self)
684 
685 
686  def get_vertex_name(self, i):
687  """get_vertex_name(InteractionGraph self, IMP::internal::BoostDigraph< IMP::domino::InteractionGraph,IMP::Particle *,IMP::domino::ShowInteractionGraphVertex >::VertexDescriptor i) -> Particle"""
688  return _IMP_domino.InteractionGraph_get_vertex_name(self, i)
689 
690 
691  def get_in_neighbors(self, v):
692  """get_in_neighbors(InteractionGraph self, IMP::internal::BoostDigraph< IMP::domino::InteractionGraph,IMP::Particle *,IMP::domino::ShowInteractionGraphVertex >::VertexDescriptor v) -> IMP::internal::BoostDigraph< IMP::domino::InteractionGraph,IMP::Particle *,IMP::domino::ShowInteractionGraphVertex >::VertexDescriptors"""
693  return _IMP_domino.InteractionGraph_get_in_neighbors(self, v)
694 
695 
696  def get_out_neighbors(self, v):
697  """get_out_neighbors(InteractionGraph self, IMP::internal::BoostDigraph< IMP::domino::InteractionGraph,IMP::Particle *,IMP::domino::ShowInteractionGraphVertex >::VertexDescriptor v) -> IMP::internal::BoostDigraph< IMP::domino::InteractionGraph,IMP::Particle *,IMP::domino::ShowInteractionGraphVertex >::VertexDescriptors"""
698  return _IMP_domino.InteractionGraph_get_out_neighbors(self, v)
699 
700 
701  def show_graphviz(self, *args):
702  """
703  show_graphviz(InteractionGraph self, _ostream out)
704  show_graphviz(InteractionGraph self)
705  """
706  return _IMP_domino.InteractionGraph_show_graphviz(self, *args)
707 
708 
709  def get_graphviz_string(self):
710  """get_graphviz_string(InteractionGraph self) -> std::string"""
711  return _IMP_domino.InteractionGraph_get_graphviz_string(self)
712 
713 
714  def add_edge(self, v0, v1):
715  """add_edge(InteractionGraph self, IMP::internal::BoostDigraph< IMP::domino::InteractionGraph,IMP::Particle *,IMP::domino::ShowInteractionGraphVertex >::VertexDescriptor v0, IMP::internal::BoostDigraph< IMP::domino::InteractionGraph,IMP::Particle *,IMP::domino::ShowInteractionGraphVertex >::VertexDescriptor v1)"""
716  return _IMP_domino.InteractionGraph_add_edge(self, v0, v1)
717 
718 
719  def add_vertex(self, l):
720  """add_vertex(InteractionGraph self, Particle l) -> IMP::internal::BoostDigraph< IMP::domino::InteractionGraph,IMP::Particle *,IMP::domino::ShowInteractionGraphVertex >::VertexDescriptor"""
721  return _IMP_domino.InteractionGraph_add_vertex(self, l)
722 
723 
724  def remove_vertex(self, l):
725  """remove_vertex(InteractionGraph self, IMP::internal::BoostDigraph< IMP::domino::InteractionGraph,IMP::Particle *,IMP::domino::ShowInteractionGraphVertex >::VertexDescriptor l)"""
726  return _IMP_domino.InteractionGraph_remove_vertex(self, l)
727 
728  __swig_destroy__ = _IMP_domino.delete_InteractionGraph
729  __del__ = lambda self: None
730 InteractionGraph_swigregister = _IMP_domino.InteractionGraph_swigregister
731 InteractionGraph_swigregister(InteractionGraph)
732 
733 
734 _value_types.append("InteractionGraph")
735 
736 class SubsetGraph(IMP.Object):
737  """Proxy of C++ IMP::internal::BoostDigraph<(IMP::domino::SubsetGraph,IMP::domino::Subset,IMP::domino::ShowSubsetGraphVertex)> class"""
738  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
739  __repr__ = _swig_repr
740 
741  def __init__(self):
742  """__init__(IMP::internal::BoostDigraph<(IMP::domino::SubsetGraph,IMP::domino::Subset,IMP::domino::ShowSubsetGraphVertex)> self) -> SubsetGraph"""
743  this = _IMP_domino.new_SubsetGraph()
744  try:
745  self.this.append(this)
746  except:
747  self.this = this
748 
749  def get_graph(self):
750  """get_graph(SubsetGraph self) -> IMP::domino::SubsetGraph const &"""
751  return _IMP_domino.SubsetGraph_get_graph(self)
752 
753 
754  def get_vertices(self):
755  """get_vertices(SubsetGraph self) -> IMP::internal::BoostDigraph< IMP::domino::SubsetGraph,IMP::domino::Subset,IMP::domino::ShowSubsetGraphVertex >::VertexDescriptors"""
756  return _IMP_domino.SubsetGraph_get_vertices(self)
757 
758 
759  def get_vertex_name(self, i):
760  """get_vertex_name(SubsetGraph self, IMP::internal::BoostDigraph< IMP::domino::SubsetGraph,IMP::domino::Subset,IMP::domino::ShowSubsetGraphVertex >::VertexDescriptor i) -> Subset"""
761  return _IMP_domino.SubsetGraph_get_vertex_name(self, i)
762 
763 
764  def get_in_neighbors(self, v):
765  """get_in_neighbors(SubsetGraph self, IMP::internal::BoostDigraph< IMP::domino::SubsetGraph,IMP::domino::Subset,IMP::domino::ShowSubsetGraphVertex >::VertexDescriptor v) -> IMP::internal::BoostDigraph< IMP::domino::SubsetGraph,IMP::domino::Subset,IMP::domino::ShowSubsetGraphVertex >::VertexDescriptors"""
766  return _IMP_domino.SubsetGraph_get_in_neighbors(self, v)
767 
768 
769  def get_out_neighbors(self, v):
770  """get_out_neighbors(SubsetGraph self, IMP::internal::BoostDigraph< IMP::domino::SubsetGraph,IMP::domino::Subset,IMP::domino::ShowSubsetGraphVertex >::VertexDescriptor v) -> IMP::internal::BoostDigraph< IMP::domino::SubsetGraph,IMP::domino::Subset,IMP::domino::ShowSubsetGraphVertex >::VertexDescriptors"""
771  return _IMP_domino.SubsetGraph_get_out_neighbors(self, v)
772 
773 
774  def show_graphviz(self, *args):
775  """
776  show_graphviz(SubsetGraph self, _ostream out)
777  show_graphviz(SubsetGraph self)
778  """
779  return _IMP_domino.SubsetGraph_show_graphviz(self, *args)
780 
781 
782  def get_graphviz_string(self):
783  """get_graphviz_string(SubsetGraph self) -> std::string"""
784  return _IMP_domino.SubsetGraph_get_graphviz_string(self)
785 
786 
787  def add_edge(self, v0, v1):
788  """add_edge(SubsetGraph self, IMP::internal::BoostDigraph< IMP::domino::SubsetGraph,IMP::domino::Subset,IMP::domino::ShowSubsetGraphVertex >::VertexDescriptor v0, IMP::internal::BoostDigraph< IMP::domino::SubsetGraph,IMP::domino::Subset,IMP::domino::ShowSubsetGraphVertex >::VertexDescriptor v1)"""
789  return _IMP_domino.SubsetGraph_add_edge(self, v0, v1)
790 
791 
792  def add_vertex(self, l):
793  """add_vertex(SubsetGraph self, Subset l) -> IMP::internal::BoostDigraph< IMP::domino::SubsetGraph,IMP::domino::Subset,IMP::domino::ShowSubsetGraphVertex >::VertexDescriptor"""
794  return _IMP_domino.SubsetGraph_add_vertex(self, l)
795 
796 
797  def remove_vertex(self, l):
798  """remove_vertex(SubsetGraph self, IMP::internal::BoostDigraph< IMP::domino::SubsetGraph,IMP::domino::Subset,IMP::domino::ShowSubsetGraphVertex >::VertexDescriptor l)"""
799  return _IMP_domino.SubsetGraph_remove_vertex(self, l)
800 
801  __swig_destroy__ = _IMP_domino.delete_SubsetGraph
802  __del__ = lambda self: None
803 SubsetGraph_swigregister = _IMP_domino.SubsetGraph_swigregister
804 SubsetGraph_swigregister(SubsetGraph)
805 
806 
807 _value_types.append("SubsetGraph")
808 
809 class CliqueGraph(IMP.Object):
810  """Proxy of C++ IMP::internal::BoostDigraph<(IMP::domino::CliqueGraph,IMP::domino::Subset,IMP::domino::ShowCliqueGraphVertex)> class"""
811  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
812  __repr__ = _swig_repr
813 
814  def __init__(self):
815  """__init__(IMP::internal::BoostDigraph<(IMP::domino::CliqueGraph,IMP::domino::Subset,IMP::domino::ShowCliqueGraphVertex)> self) -> CliqueGraph"""
816  this = _IMP_domino.new_CliqueGraph()
817  try:
818  self.this.append(this)
819  except:
820  self.this = this
821 
822  def get_graph(self):
823  """get_graph(CliqueGraph self) -> IMP::domino::CliqueGraph const &"""
824  return _IMP_domino.CliqueGraph_get_graph(self)
825 
826 
827  def get_vertices(self):
828  """get_vertices(CliqueGraph self) -> IMP::internal::BoostDigraph< IMP::domino::CliqueGraph,IMP::domino::Subset,IMP::domino::ShowCliqueGraphVertex >::VertexDescriptors"""
829  return _IMP_domino.CliqueGraph_get_vertices(self)
830 
831 
832  def get_vertex_name(self, i):
833  """get_vertex_name(CliqueGraph self, IMP::internal::BoostDigraph< IMP::domino::CliqueGraph,IMP::domino::Subset,IMP::domino::ShowCliqueGraphVertex >::VertexDescriptor i) -> Subset"""
834  return _IMP_domino.CliqueGraph_get_vertex_name(self, i)
835 
836 
837  def get_in_neighbors(self, v):
838  """get_in_neighbors(CliqueGraph self, IMP::internal::BoostDigraph< IMP::domino::CliqueGraph,IMP::domino::Subset,IMP::domino::ShowCliqueGraphVertex >::VertexDescriptor v) -> IMP::internal::BoostDigraph< IMP::domino::CliqueGraph,IMP::domino::Subset,IMP::domino::ShowCliqueGraphVertex >::VertexDescriptors"""
839  return _IMP_domino.CliqueGraph_get_in_neighbors(self, v)
840 
841 
842  def get_out_neighbors(self, v):
843  """get_out_neighbors(CliqueGraph self, IMP::internal::BoostDigraph< IMP::domino::CliqueGraph,IMP::domino::Subset,IMP::domino::ShowCliqueGraphVertex >::VertexDescriptor v) -> IMP::internal::BoostDigraph< IMP::domino::CliqueGraph,IMP::domino::Subset,IMP::domino::ShowCliqueGraphVertex >::VertexDescriptors"""
844  return _IMP_domino.CliqueGraph_get_out_neighbors(self, v)
845 
846 
847  def show_graphviz(self, *args):
848  """
849  show_graphviz(CliqueGraph self, _ostream out)
850  show_graphviz(CliqueGraph self)
851  """
852  return _IMP_domino.CliqueGraph_show_graphviz(self, *args)
853 
854 
855  def get_graphviz_string(self):
856  """get_graphviz_string(CliqueGraph self) -> std::string"""
857  return _IMP_domino.CliqueGraph_get_graphviz_string(self)
858 
859 
860  def add_edge(self, v0, v1):
861  """add_edge(CliqueGraph self, IMP::internal::BoostDigraph< IMP::domino::CliqueGraph,IMP::domino::Subset,IMP::domino::ShowCliqueGraphVertex >::VertexDescriptor v0, IMP::internal::BoostDigraph< IMP::domino::CliqueGraph,IMP::domino::Subset,IMP::domino::ShowCliqueGraphVertex >::VertexDescriptor v1)"""
862  return _IMP_domino.CliqueGraph_add_edge(self, v0, v1)
863 
864 
865  def add_vertex(self, l):
866  """add_vertex(CliqueGraph self, Subset l) -> IMP::internal::BoostDigraph< IMP::domino::CliqueGraph,IMP::domino::Subset,IMP::domino::ShowCliqueGraphVertex >::VertexDescriptor"""
867  return _IMP_domino.CliqueGraph_add_vertex(self, l)
868 
869 
870  def remove_vertex(self, l):
871  """remove_vertex(CliqueGraph self, IMP::internal::BoostDigraph< IMP::domino::CliqueGraph,IMP::domino::Subset,IMP::domino::ShowCliqueGraphVertex >::VertexDescriptor l)"""
872  return _IMP_domino.CliqueGraph_remove_vertex(self, l)
873 
874  __swig_destroy__ = _IMP_domino.delete_CliqueGraph
875  __del__ = lambda self: None
876 CliqueGraph_swigregister = _IMP_domino.CliqueGraph_swigregister
877 CliqueGraph_swigregister(CliqueGraph)
878 
879 
880 _value_types.append("CliqueGraph")
881 
882 class MergeTree(IMP.Object):
883  """Proxy of C++ IMP::internal::BoostDigraph<(IMP::domino::MergeTree,IMP::domino::Subset,IMP::domino::ShowMergeTreeVertex)> class"""
884  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
885  __repr__ = _swig_repr
886 
887  def __init__(self):
888  """__init__(IMP::internal::BoostDigraph<(IMP::domino::MergeTree,IMP::domino::Subset,IMP::domino::ShowMergeTreeVertex)> self) -> MergeTree"""
889  this = _IMP_domino.new_MergeTree()
890  try:
891  self.this.append(this)
892  except:
893  self.this = this
894 
895  def get_graph(self):
896  """get_graph(MergeTree self) -> IMP::domino::MergeTree const &"""
897  return _IMP_domino.MergeTree_get_graph(self)
898 
899 
900  def get_vertices(self):
901  """get_vertices(MergeTree self) -> IMP::internal::BoostDigraph< IMP::domino::MergeTree,IMP::domino::Subset,IMP::domino::ShowMergeTreeVertex >::VertexDescriptors"""
902  return _IMP_domino.MergeTree_get_vertices(self)
903 
904 
905  def get_vertex_name(self, i):
906  """get_vertex_name(MergeTree self, IMP::internal::BoostDigraph< IMP::domino::MergeTree,IMP::domino::Subset,IMP::domino::ShowMergeTreeVertex >::VertexDescriptor i) -> Subset"""
907  return _IMP_domino.MergeTree_get_vertex_name(self, i)
908 
909 
910  def get_in_neighbors(self, v):
911  """get_in_neighbors(MergeTree self, IMP::internal::BoostDigraph< IMP::domino::MergeTree,IMP::domino::Subset,IMP::domino::ShowMergeTreeVertex >::VertexDescriptor v) -> IMP::internal::BoostDigraph< IMP::domino::MergeTree,IMP::domino::Subset,IMP::domino::ShowMergeTreeVertex >::VertexDescriptors"""
912  return _IMP_domino.MergeTree_get_in_neighbors(self, v)
913 
914 
915  def get_out_neighbors(self, v):
916  """get_out_neighbors(MergeTree self, IMP::internal::BoostDigraph< IMP::domino::MergeTree,IMP::domino::Subset,IMP::domino::ShowMergeTreeVertex >::VertexDescriptor v) -> IMP::internal::BoostDigraph< IMP::domino::MergeTree,IMP::domino::Subset,IMP::domino::ShowMergeTreeVertex >::VertexDescriptors"""
917  return _IMP_domino.MergeTree_get_out_neighbors(self, v)
918 
919 
920  def show_graphviz(self, *args):
921  """
922  show_graphviz(MergeTree self, _ostream out)
923  show_graphviz(MergeTree self)
924  """
925  return _IMP_domino.MergeTree_show_graphviz(self, *args)
926 
927 
928  def get_graphviz_string(self):
929  """get_graphviz_string(MergeTree self) -> std::string"""
930  return _IMP_domino.MergeTree_get_graphviz_string(self)
931 
932 
933  def add_edge(self, v0, v1):
934  """add_edge(MergeTree self, IMP::internal::BoostDigraph< IMP::domino::MergeTree,IMP::domino::Subset,IMP::domino::ShowMergeTreeVertex >::VertexDescriptor v0, IMP::internal::BoostDigraph< IMP::domino::MergeTree,IMP::domino::Subset,IMP::domino::ShowMergeTreeVertex >::VertexDescriptor v1)"""
935  return _IMP_domino.MergeTree_add_edge(self, v0, v1)
936 
937 
938  def add_vertex(self, l):
939  """add_vertex(MergeTree self, Subset l) -> IMP::internal::BoostDigraph< IMP::domino::MergeTree,IMP::domino::Subset,IMP::domino::ShowMergeTreeVertex >::VertexDescriptor"""
940  return _IMP_domino.MergeTree_add_vertex(self, l)
941 
942 
943  def remove_vertex(self, l):
944  """remove_vertex(MergeTree self, IMP::internal::BoostDigraph< IMP::domino::MergeTree,IMP::domino::Subset,IMP::domino::ShowMergeTreeVertex >::VertexDescriptor l)"""
945  return _IMP_domino.MergeTree_remove_vertex(self, l)
946 
947  __swig_destroy__ = _IMP_domino.delete_MergeTree
948  __del__ = lambda self: None
949 MergeTree_swigregister = _IMP_domino.MergeTree_swigregister
950 MergeTree_swigregister(MergeTree)
951 
952 
953 _value_types.append("MergeTree")
954 
955 
956 _object_types.append("BranchAndBoundSampler")
957 
958 
959 def _object_cast_to_BranchAndBoundSampler(o):
960  """_object_cast_to_BranchAndBoundSampler(Object o) -> BranchAndBoundSampler"""
961  return _IMP_domino._object_cast_to_BranchAndBoundSampler(o)
962 
963 _object_types.append("BranchAndBoundAssignmentsTable")
964 
965 
966 def _object_cast_to_BranchAndBoundAssignmentsTable(o):
967  """_object_cast_to_BranchAndBoundAssignmentsTable(Object o) -> BranchAndBoundAssignmentsTable"""
968  return _IMP_domino._object_cast_to_BranchAndBoundAssignmentsTable(o)
969 
970 _object_types.append("RecursiveAssignmentsTable")
971 
972 
973 def _object_cast_to_RecursiveAssignmentsTable(o):
974  """_object_cast_to_RecursiveAssignmentsTable(Object o) -> RecursiveAssignmentsTable"""
975  return _IMP_domino._object_cast_to_RecursiveAssignmentsTable(o)
976 
977 _object_types.append("SimpleAssignmentsTable")
978 
979 
980 def _object_cast_to_SimpleAssignmentsTable(o):
981  """_object_cast_to_SimpleAssignmentsTable(Object o) -> SimpleAssignmentsTable"""
982  return _IMP_domino._object_cast_to_SimpleAssignmentsTable(o)
983 
984 _object_types.append("CompoundStates")
985 
986 
987 def _object_cast_to_CompoundStates(o):
988  """_object_cast_to_CompoundStates(Object o) -> CompoundStates"""
989  return _IMP_domino._object_cast_to_CompoundStates(o)
990 
991 _object_types.append("DisjointSetsSubsetFilterTable")
992 
993 
994 def _object_cast_to_DisjointSetsSubsetFilterTable(o):
995  """_object_cast_to_DisjointSetsSubsetFilterTable(Object o) -> DisjointSetsSubsetFilterTable"""
996  return _IMP_domino._object_cast_to_DisjointSetsSubsetFilterTable(o)
997 
998 _object_types.append("MinimumRestraintScoreSubsetFilterTable")
999 
1000 
1001 def _object_cast_to_MinimumRestraintScoreSubsetFilterTable(o):
1002  """_object_cast_to_MinimumRestraintScoreSubsetFilterTable(Object o) -> MinimumRestraintScoreSubsetFilterTable"""
1003  return _IMP_domino._object_cast_to_MinimumRestraintScoreSubsetFilterTable(o)
1004 
1005 _object_types.append("DominoSampler")
1006 
1007 
1008 def _object_cast_to_DominoSampler(o):
1009  """_object_cast_to_DominoSampler(Object o) -> DominoSampler"""
1010  return _IMP_domino._object_cast_to_DominoSampler(o)
1011 
1012 _object_types.append("EqualitySubsetFilterTable")
1013 
1014 
1015 def _object_cast_to_EqualitySubsetFilterTable(o):
1016  """_object_cast_to_EqualitySubsetFilterTable(Object o) -> EqualitySubsetFilterTable"""
1017  return _IMP_domino._object_cast_to_EqualitySubsetFilterTable(o)
1018 
1019 _object_types.append("EquivalenceSubsetFilterTable")
1020 
1021 
1022 def _object_cast_to_EquivalenceSubsetFilterTable(o):
1023  """_object_cast_to_EquivalenceSubsetFilterTable(Object o) -> EquivalenceSubsetFilterTable"""
1024  return _IMP_domino._object_cast_to_EquivalenceSubsetFilterTable(o)
1025 
1026 _object_types.append("EquivalenceAndExclusionSubsetFilterTable")
1027 
1028 
1029 def _object_cast_to_EquivalenceAndExclusionSubsetFilterTable(o):
1030  """_object_cast_to_EquivalenceAndExclusionSubsetFilterTable(Object o) -> EquivalenceAndExclusionSubsetFilterTable"""
1031  return _IMP_domino._object_cast_to_EquivalenceAndExclusionSubsetFilterTable(o)
1032 
1033 _object_types.append("ExclusionSubsetFilterTable")
1034 
1035 
1036 def _object_cast_to_ExclusionSubsetFilterTable(o):
1037  """_object_cast_to_ExclusionSubsetFilterTable(Object o) -> ExclusionSubsetFilterTable"""
1038  return _IMP_domino._object_cast_to_ExclusionSubsetFilterTable(o)
1039 
1040 _object_types.append("IndexStates")
1041 
1042 
1043 def _object_cast_to_IndexStates(o):
1044  """_object_cast_to_IndexStates(Object o) -> IndexStates"""
1045  return _IMP_domino._object_cast_to_IndexStates(o)
1046 
1047 _object_types.append("ListSubsetFilterTable")
1048 
1049 
1050 def _object_cast_to_ListSubsetFilterTable(o):
1051  """_object_cast_to_ListSubsetFilterTable(Object o) -> ListSubsetFilterTable"""
1052  return _IMP_domino._object_cast_to_ListSubsetFilterTable(o)
1053 
1054 _object_types.append("ListAssignmentsTable")
1055 
1056 
1057 def _object_cast_to_ListAssignmentsTable(o):
1058  """_object_cast_to_ListAssignmentsTable(Object o) -> ListAssignmentsTable"""
1059  return _IMP_domino._object_cast_to_ListAssignmentsTable(o)
1060 
1061 _object_types.append("ParticleStatesTable")
1062 
1063 
1064 def _object_cast_to_ParticleStatesTable(o):
1065  """_object_cast_to_ParticleStatesTable(Object o) -> ParticleStatesTable"""
1066  return _IMP_domino._object_cast_to_ParticleStatesTable(o)
1067 
1068 _object_types.append("RecursiveStates")
1069 
1070 
1071 def _object_cast_to_RecursiveStates(o):
1072  """_object_cast_to_RecursiveStates(Object o) -> RecursiveStates"""
1073  return _IMP_domino._object_cast_to_RecursiveStates(o)
1074 
1075 _object_types.append("ProbabilisticSubsetFilterTable")
1076 
1077 
1078 def _object_cast_to_ProbabilisticSubsetFilterTable(o):
1079  """_object_cast_to_ProbabilisticSubsetFilterTable(Object o) -> ProbabilisticSubsetFilterTable"""
1080  return _IMP_domino._object_cast_to_ProbabilisticSubsetFilterTable(o)
1081 
1082 _object_types.append("RestraintScoreSubsetFilterTable")
1083 
1084 
1085 def _object_cast_to_RestraintScoreSubsetFilterTable(o):
1086  """_object_cast_to_RestraintScoreSubsetFilterTable(Object o) -> RestraintScoreSubsetFilterTable"""
1087  return _IMP_domino._object_cast_to_RestraintScoreSubsetFilterTable(o)
1088 
1089 _object_types.append("RigidBodyStates")
1090 
1091 
1092 def _object_cast_to_RigidBodyStates(o):
1093  """_object_cast_to_RigidBodyStates(Object o) -> RigidBodyStates"""
1094  return _IMP_domino._object_cast_to_RigidBodyStates(o)
1095 
1096 _object_types.append("XYZStates")
1097 
1098 
1099 def _object_cast_to_XYZStates(o):
1100  """_object_cast_to_XYZStates(Object o) -> XYZStates"""
1101  return _IMP_domino._object_cast_to_XYZStates(o)
1102 
1103 _object_types.append("NestedRigidBodyStates")
1104 
1105 
1106 def _object_cast_to_NestedRigidBodyStates(o):
1107  """_object_cast_to_NestedRigidBodyStates(Object o) -> NestedRigidBodyStates"""
1108  return _IMP_domino._object_cast_to_NestedRigidBodyStates(o)
1109 
1110 _object_types.append("DependencyScoreState")
1111 
1112 
1113 def _object_cast_to_DependencyScoreState(o):
1114  """_object_cast_to_DependencyScoreState(Object o) -> DependencyScoreState"""
1115  return _IMP_domino._object_cast_to_DependencyScoreState(o)
1116 
1117 _object_types.append("PairListSubsetFilterTable")
1118 
1119 
1120 def _object_cast_to_PairListSubsetFilterTable(o):
1121  """_object_cast_to_PairListSubsetFilterTable(Object o) -> PairListSubsetFilterTable"""
1122  return _IMP_domino._object_cast_to_PairListSubsetFilterTable(o)
1123 
1124 _object_types.append("ListAssignmentContainer")
1125 
1126 
1127 def _object_cast_to_ListAssignmentContainer(o):
1128  """_object_cast_to_ListAssignmentContainer(Object o) -> ListAssignmentContainer"""
1129  return _IMP_domino._object_cast_to_ListAssignmentContainer(o)
1130 
1131 _object_types.append("PackedAssignmentContainer")
1132 
1133 
1134 def _object_cast_to_PackedAssignmentContainer(o):
1135  """_object_cast_to_PackedAssignmentContainer(Object o) -> PackedAssignmentContainer"""
1136  return _IMP_domino._object_cast_to_PackedAssignmentContainer(o)
1137 
1138 _object_types.append("HeapAssignmentContainer")
1139 
1140 
1141 def _object_cast_to_HeapAssignmentContainer(o):
1142  """_object_cast_to_HeapAssignmentContainer(Object o) -> HeapAssignmentContainer"""
1143  return _IMP_domino._object_cast_to_HeapAssignmentContainer(o)
1144 
1145 _object_types.append("RangeViewAssignmentContainer")
1146 
1147 
1148 def _object_cast_to_RangeViewAssignmentContainer(o):
1149  """_object_cast_to_RangeViewAssignmentContainer(Object o) -> RangeViewAssignmentContainer"""
1150  return _IMP_domino._object_cast_to_RangeViewAssignmentContainer(o)
1151 
1152 _object_types.append("SampleAssignmentContainer")
1153 
1154 
1155 def _object_cast_to_SampleAssignmentContainer(o):
1156  """_object_cast_to_SampleAssignmentContainer(Object o) -> SampleAssignmentContainer"""
1157  return _IMP_domino._object_cast_to_SampleAssignmentContainer(o)
1158 
1159 _object_types.append("PermutationStates")
1160 
1161 
1162 def _object_cast_to_PermutationStates(o):
1163  """_object_cast_to_PermutationStates(Object o) -> PermutationStates"""
1164  return _IMP_domino._object_cast_to_PermutationStates(o)
1165 
1166 _object_types.append("WriteHDF5AssignmentContainer")
1167 
1168 
1169 def _object_cast_to_WriteHDF5AssignmentContainer(o):
1170  """_object_cast_to_WriteHDF5AssignmentContainer(Object o) -> WriteHDF5AssignmentContainer"""
1171  return _IMP_domino._object_cast_to_WriteHDF5AssignmentContainer(o)
1172 
1173 _object_types.append("ReadHDF5AssignmentContainer")
1174 
1175 
1176 def _object_cast_to_ReadHDF5AssignmentContainer(o):
1177  """_object_cast_to_ReadHDF5AssignmentContainer(Object o) -> ReadHDF5AssignmentContainer"""
1178  return _IMP_domino._object_cast_to_ReadHDF5AssignmentContainer(o)
1179 
1180 _object_types.append("ReadAssignmentContainer")
1181 
1182 
1183 def _object_cast_to_ReadAssignmentContainer(o):
1184  """_object_cast_to_ReadAssignmentContainer(Object o) -> ReadAssignmentContainer"""
1185  return _IMP_domino._object_cast_to_ReadAssignmentContainer(o)
1186 
1187 _object_types.append("WriteAssignmentContainer")
1188 
1189 
1190 def _object_cast_to_WriteAssignmentContainer(o):
1191  """_object_cast_to_WriteAssignmentContainer(Object o) -> WriteAssignmentContainer"""
1192  return _IMP_domino._object_cast_to_WriteAssignmentContainer(o)
1193 
1194 _object_types.append("CappedAssignmentContainer")
1195 
1196 
1197 def _object_cast_to_CappedAssignmentContainer(o):
1198  """_object_cast_to_CappedAssignmentContainer(Object o) -> CappedAssignmentContainer"""
1199  return _IMP_domino._object_cast_to_CappedAssignmentContainer(o)
1200 
1201 _object_types.append("RestraintCache")
1202 
1203 
1204 def _object_cast_to_RestraintCache(o):
1205  """_object_cast_to_RestraintCache(Object o) -> RestraintCache"""
1206  return _IMP_domino._object_cast_to_RestraintCache(o)
1207 
1208 Subsets=list
1209 _plural_types.append("Subsets")
1210 _value_types.append("Subset")
1211 
1212 
1213 Assignments=list
1214 _plural_types.append("Assignments")
1215 _value_types.append("Assignment")
1216 
1217 
1218 Slices=list
1219 _plural_types.append("Slices")
1220 _value_types.append("Slice")
1221 
1222 
1223 Orders=list
1224 _plural_types.append("Orders")
1225 _value_types.append("Order")
1226 
1227 class _IntArray(IMP._Value):
1228  """Proxy of C++ IMP::ConstVector<(int)> class"""
1229  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1230  __repr__ = _swig_repr
1231  __swig_destroy__ = _IMP_domino.delete__IntArray
1232  __del__ = lambda self: None
1233 
1234  def __init__(self, *args):
1235  """
1236  __init__(IMP::ConstVector<(int)> self, unsigned int sz, int fill) -> _IntArray
1237  __init__(IMP::ConstVector<(int)> self) -> _IntArray
1238  """
1239  this = _IMP_domino.new__IntArray(*args)
1240  try:
1241  self.this.append(this)
1242  except:
1243  self.this = this
1244 
1245  def __cmp__(self, o):
1246  """__cmp__(_IntArray self, _IntArray o) -> int"""
1247  return _IMP_domino._IntArray___cmp__(self, o)
1248 
1249 
1250  def __eq__(self, o):
1251  """__eq__(_IntArray self, _IntArray o) -> bool"""
1252  return _IMP_domino._IntArray___eq__(self, o)
1253 
1254 
1255  def __ne__(self, o):
1256  """__ne__(_IntArray self, _IntArray o) -> bool"""
1257  return _IMP_domino._IntArray___ne__(self, o)
1258 
1259 
1260  def __lt__(self, o):
1261  """__lt__(_IntArray self, _IntArray o) -> bool"""
1262  return _IMP_domino._IntArray___lt__(self, o)
1263 
1264 
1265  def __gt__(self, o):
1266  """__gt__(_IntArray self, _IntArray o) -> bool"""
1267  return _IMP_domino._IntArray___gt__(self, o)
1268 
1269 
1270  def __ge__(self, o):
1271  """__ge__(_IntArray self, _IntArray o) -> bool"""
1272  return _IMP_domino._IntArray___ge__(self, o)
1273 
1274 
1275  def __le__(self, o):
1276  """__le__(_IntArray self, _IntArray o) -> bool"""
1277  return _IMP_domino._IntArray___le__(self, o)
1278 
1279 
1280  def __getitem__(self, i):
1281  """__getitem__(_IntArray self, unsigned int i) -> int"""
1282  return _IMP_domino._IntArray___getitem__(self, i)
1283 
1284 
1285  def __len__(self):
1286  """__len__(_IntArray self) -> unsigned int"""
1287  return _IMP_domino._IntArray___len__(self)
1288 
1289 
1290  def show(self, *args):
1291  """
1292  show(_IntArray self, _ostream out)
1293  show(_IntArray self)
1294  """
1295  return _IMP_domino._IntArray_show(self, *args)
1296 
1297 
1298  def __hash__(self):
1299  """__hash__(_IntArray self) -> std::size_t"""
1300  return _IMP_domino._IntArray___hash__(self)
1301 
1302 _IntArray_swigregister = _IMP_domino._IntArray_swigregister
1303 _IntArray_swigregister(_IntArray)
1304 
1305 class _UIntArray(IMP._Value):
1306  """Proxy of C++ IMP::ConstVector<(unsigned int)> class"""
1307  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1308  __repr__ = _swig_repr
1309  __swig_destroy__ = _IMP_domino.delete__UIntArray
1310  __del__ = lambda self: None
1311 
1312  def __init__(self, *args):
1313  """
1314  __init__(IMP::ConstVector<(unsigned int)> self, unsigned int sz, unsigned int fill) -> _UIntArray
1315  __init__(IMP::ConstVector<(unsigned int)> self) -> _UIntArray
1316  """
1317  this = _IMP_domino.new__UIntArray(*args)
1318  try:
1319  self.this.append(this)
1320  except:
1321  self.this = this
1322 
1323  def __cmp__(self, o):
1324  """__cmp__(_UIntArray self, _UIntArray o) -> int"""
1325  return _IMP_domino._UIntArray___cmp__(self, o)
1326 
1327 
1328  def __eq__(self, o):
1329  """__eq__(_UIntArray self, _UIntArray o) -> bool"""
1330  return _IMP_domino._UIntArray___eq__(self, o)
1331 
1332 
1333  def __ne__(self, o):
1334  """__ne__(_UIntArray self, _UIntArray o) -> bool"""
1335  return _IMP_domino._UIntArray___ne__(self, o)
1336 
1337 
1338  def __lt__(self, o):
1339  """__lt__(_UIntArray self, _UIntArray o) -> bool"""
1340  return _IMP_domino._UIntArray___lt__(self, o)
1341 
1342 
1343  def __gt__(self, o):
1344  """__gt__(_UIntArray self, _UIntArray o) -> bool"""
1345  return _IMP_domino._UIntArray___gt__(self, o)
1346 
1347 
1348  def __ge__(self, o):
1349  """__ge__(_UIntArray self, _UIntArray o) -> bool"""
1350  return _IMP_domino._UIntArray___ge__(self, o)
1351 
1352 
1353  def __le__(self, o):
1354  """__le__(_UIntArray self, _UIntArray o) -> bool"""
1355  return _IMP_domino._UIntArray___le__(self, o)
1356 
1357 
1358  def __getitem__(self, i):
1359  """__getitem__(_UIntArray self, unsigned int i) -> unsigned int"""
1360  return _IMP_domino._UIntArray___getitem__(self, i)
1361 
1362 
1363  def __len__(self):
1364  """__len__(_UIntArray self) -> unsigned int"""
1365  return _IMP_domino._UIntArray___len__(self)
1366 
1367 
1368  def show(self, *args):
1369  """
1370  show(_UIntArray self, _ostream out)
1371  show(_UIntArray self)
1372  """
1373  return _IMP_domino._UIntArray_show(self, *args)
1374 
1375 
1376  def __hash__(self):
1377  """__hash__(_UIntArray self) -> std::size_t"""
1378  return _IMP_domino._UIntArray___hash__(self)
1379 
1380 _UIntArray_swigregister = _IMP_domino._UIntArray_swigregister
1381 _UIntArray_swigregister(_UIntArray)
1382 
1383 class _ParticleArray(IMP._Value):
1384  """Proxy of C++ IMP::ConstVector<(IMP::WeakPointer<(Particle)>,p.Particle)> class"""
1385  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1386  __repr__ = _swig_repr
1387  __swig_destroy__ = _IMP_domino.delete__ParticleArray
1388  __del__ = lambda self: None
1389 
1390  def __init__(self, *args):
1391  """
1392  __init__(IMP::ConstVector<(IMP::WeakPointer<(Particle)>,p.Particle)> self, unsigned int sz, IMP::WeakPointer< IMP::Particle > fill) -> _ParticleArray
1393  __init__(IMP::ConstVector<(IMP::WeakPointer<(Particle)>,p.Particle)> self) -> _ParticleArray
1394  """
1395  this = _IMP_domino.new__ParticleArray(*args)
1396  try:
1397  self.this.append(this)
1398  except:
1399  self.this = this
1400 
1401  def __cmp__(self, o):
1402  """__cmp__(_ParticleArray self, _ParticleArray o) -> int"""
1403  return _IMP_domino._ParticleArray___cmp__(self, o)
1404 
1405 
1406  def __eq__(self, o):
1407  """__eq__(_ParticleArray self, _ParticleArray o) -> bool"""
1408  return _IMP_domino._ParticleArray___eq__(self, o)
1409 
1410 
1411  def __ne__(self, o):
1412  """__ne__(_ParticleArray self, _ParticleArray o) -> bool"""
1413  return _IMP_domino._ParticleArray___ne__(self, o)
1414 
1415 
1416  def __lt__(self, o):
1417  """__lt__(_ParticleArray self, _ParticleArray o) -> bool"""
1418  return _IMP_domino._ParticleArray___lt__(self, o)
1419 
1420 
1421  def __gt__(self, o):
1422  """__gt__(_ParticleArray self, _ParticleArray o) -> bool"""
1423  return _IMP_domino._ParticleArray___gt__(self, o)
1424 
1425 
1426  def __ge__(self, o):
1427  """__ge__(_ParticleArray self, _ParticleArray o) -> bool"""
1428  return _IMP_domino._ParticleArray___ge__(self, o)
1429 
1430 
1431  def __le__(self, o):
1432  """__le__(_ParticleArray self, _ParticleArray o) -> bool"""
1433  return _IMP_domino._ParticleArray___le__(self, o)
1434 
1435 
1436  def __getitem__(self, i):
1437  """__getitem__(_ParticleArray self, unsigned int i) -> Particle"""
1438  return _IMP_domino._ParticleArray___getitem__(self, i)
1439 
1440 
1441  def __len__(self):
1442  """__len__(_ParticleArray self) -> unsigned int"""
1443  return _IMP_domino._ParticleArray___len__(self)
1444 
1445 
1446  def show(self, *args):
1447  """
1448  show(_ParticleArray self, _ostream out)
1449  show(_ParticleArray self)
1450  """
1451  return _IMP_domino._ParticleArray_show(self, *args)
1452 
1453 
1454  def __hash__(self):
1455  """__hash__(_ParticleArray self) -> std::size_t"""
1456  return _IMP_domino._ParticleArray___hash__(self)
1457 
1458 _ParticleArray_swigregister = _IMP_domino._ParticleArray_swigregister
1459 _ParticleArray_swigregister(_ParticleArray)
1460 
1461 class Subset(_ParticleArray):
1462  """Proxy of C++ IMP::domino::Subset class"""
1463  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1464 
1465  def __init__(self, *args):
1466  """
1467  __init__(IMP::domino::Subset self, IMP::ParticlesTemp const & ps, bool arg3) -> Subset
1468  __init__(IMP::domino::Subset self) -> Subset
1469  __init__(IMP::domino::Subset self, IMP::ParticlesTemp ps) -> Subset
1470  """
1471  this = _IMP_domino.new_Subset(*args)
1472  try:
1473  self.this.append(this)
1474  except:
1475  self.this = this
1476 
1477  def get_model(self):
1478  """get_model(Subset self) -> Model"""
1479  return _IMP_domino.Subset_get_model(self)
1480 
1481 
1482  def get_name(self):
1483  """get_name(Subset self) -> std::string"""
1484  return _IMP_domino.Subset_get_name(self)
1485 
1486 
1487  def get_contains(self, o):
1488  """get_contains(Subset self, Subset o) -> bool"""
1489  return _IMP_domino.Subset_get_contains(self, o)
1490 
1491 
1492  def __str__(self):
1493  """__str__(Subset self) -> std::string"""
1494  return _IMP_domino.Subset___str__(self)
1495 
1496 
1497  def __repr__(self):
1498  """__repr__(Subset self) -> std::string"""
1499  return _IMP_domino.Subset___repr__(self)
1500 
1501  __swig_destroy__ = _IMP_domino.delete_Subset
1502  __del__ = lambda self: None
1503 Subset_swigregister = _IMP_domino.Subset_swigregister
1504 Subset_swigregister(Subset)
1505 
1506 
1507 def get_union(a, b):
1508  """get_union(Subset a, Subset b) -> Subset"""
1509  return _IMP_domino.get_union(a, b)
1510 
1511 def get_intersection(a, b):
1512  """get_intersection(Subset a, Subset b) -> Subset"""
1513  return _IMP_domino.get_intersection(a, b)
1514 
1515 def get_difference(a, b):
1516  """get_difference(Subset a, Subset b) -> Subset"""
1517  return _IMP_domino.get_difference(a, b)
1518 class Assignment(_IntArray):
1519  """Proxy of C++ IMP::domino::Assignment class"""
1520  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1521 
1522  def __init__(self, *args):
1523  """
1524  __init__(IMP::domino::Assignment self) -> Assignment
1525  __init__(IMP::domino::Assignment self, unsigned int sz) -> Assignment
1526  __init__(IMP::domino::Assignment self, IMP::Ints const & i) -> Assignment
1527  """
1528  this = _IMP_domino.new_Assignment(*args)
1529  try:
1530  self.this.append(this)
1531  except:
1532  self.this = this
1533 
1534  def __str__(self):
1535  """__str__(Assignment self) -> std::string"""
1536  return _IMP_domino.Assignment___str__(self)
1537 
1538 
1539  def __repr__(self):
1540  """__repr__(Assignment self) -> std::string"""
1541  return _IMP_domino.Assignment___repr__(self)
1542 
1543  __swig_destroy__ = _IMP_domino.delete_Assignment
1544  __del__ = lambda self: None
1545 Assignment_swigregister = _IMP_domino.Assignment_swigregister
1546 Assignment_swigregister(Assignment)
1547 
1548 class Slice(_UIntArray):
1549  """Proxy of C++ IMP::domino::Slice class"""
1550  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1551 
1552  def __init__(self, *args):
1553  """
1554  __init__(IMP::domino::Slice self) -> Slice
1555  __init__(IMP::domino::Slice self, Subset outer, Subset inner) -> Slice
1556  """
1557  this = _IMP_domino.new_Slice(*args)
1558  try:
1559  self.this.append(this)
1560  except:
1561  self.this = this
1562 
1563  def get_sliced(self, *args):
1564  """
1565  get_sliced(Slice self, Assignment a) -> Assignment
1566  get_sliced(Slice self, Subset a) -> Subset
1567  """
1568  return _IMP_domino.Slice_get_sliced(self, *args)
1569 
1570 
1571  def __str__(self):
1572  """__str__(Slice self) -> std::string"""
1573  return _IMP_domino.Slice___str__(self)
1574 
1575 
1576  def __repr__(self):
1577  """__repr__(Slice self) -> std::string"""
1578  return _IMP_domino.Slice___repr__(self)
1579 
1580  __swig_destroy__ = _IMP_domino.delete_Slice
1581  __del__ = lambda self: None
1582 Slice_swigregister = _IMP_domino.Slice_swigregister
1583 Slice_swigregister(Slice)
1584 
1585 
1586 def get_slice(outer, inner, excluded):
1587  """get_slice(Subset outer, Subset inner, IMP::domino::Subsets const & excluded) -> Slice"""
1588  return _IMP_domino.get_slice(outer, inner, excluded)
1589 class Order(_UIntArray):
1590  """Proxy of C++ IMP::domino::Order class"""
1591  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1592 
1593  def __init__(self, *args):
1594  """
1595  __init__(IMP::domino::Order self) -> Order
1596  __init__(IMP::domino::Order self, Subset outer, IMP::ParticlesTemp const & order) -> Order
1597  """
1598  this = _IMP_domino.new_Order(*args)
1599  try:
1600  self.this.append(this)
1601  except:
1602  self.this = this
1603 
1604  def get_list_ordered(self, a):
1605  """get_list_ordered(Order self, Assignment a) -> IMP::Ints"""
1606  return _IMP_domino.Order_get_list_ordered(self, a)
1607 
1608 
1609  def get_subset_ordered(self, a):
1610  """get_subset_ordered(Order self, IMP::Ints const & a) -> Assignment"""
1611  return _IMP_domino.Order_get_subset_ordered(self, a)
1612 
1613 
1614  def __str__(self):
1615  """__str__(Order self) -> std::string"""
1616  return _IMP_domino.Order___str__(self)
1617 
1618 
1619  def __repr__(self):
1620  """__repr__(Order self) -> std::string"""
1621  return _IMP_domino.Order___repr__(self)
1622 
1623  __swig_destroy__ = _IMP_domino.delete_Order
1624  __del__ = lambda self: None
1625 Order_swigregister = _IMP_domino.Order_swigregister
1626 Order_swigregister(Order)
1627 
1628 class ParticleStates(IMP.Object):
1629  """Proxy of C++ IMP::domino::ParticleStates class"""
1630  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1631 
1632  def __init__(self, *args):
1633  """
1634  __init__(IMP::domino::ParticleStates self, std::string name) -> ParticleStates
1635  __init__(IMP::domino::ParticleStates self) -> ParticleStates
1636  """
1637  if self.__class__ == ParticleStates:
1638  _self = None
1639  else:
1640  _self = self
1641  this = _IMP_domino.new_ParticleStates(_self, *args)
1642  try:
1643  self.this.append(this)
1644  except:
1645  self.this = this
1646 
1647  if self.__class__ != ParticleStates:
1648  _director_objects.register(self)
1649 
1650 
1651 
1652 
1653  def get_number_of_particle_states(self):
1654  """get_number_of_particle_states(ParticleStates self) -> unsigned int"""
1655  return _IMP_domino.ParticleStates_get_number_of_particle_states(self)
1656 
1657 
1658  def load_particle_state(self, arg0, arg1):
1659  """load_particle_state(ParticleStates self, unsigned int arg0, Particle arg1)"""
1660  return _IMP_domino.ParticleStates_load_particle_state(self, arg0, arg1)
1661 
1662 
1663  def get_embedding(self, i):
1664  """get_embedding(ParticleStates self, unsigned int i) -> VectorKD"""
1665  return _IMP_domino.ParticleStates_get_embedding(self, i)
1666 
1667 
1668  def get_nearest_state(self, v):
1669  """get_nearest_state(ParticleStates self, VectorKD v) -> unsigned int"""
1670  return _IMP_domino.ParticleStates_get_nearest_state(self, v)
1671 
1672  __swig_destroy__ = _IMP_domino.delete_ParticleStates
1673  __del__ = lambda self: None
1674 
1675  def __str__(self):
1676  """__str__(ParticleStates self) -> std::string"""
1677  return _IMP_domino.ParticleStates___str__(self)
1678 
1679 
1680  def __repr__(self):
1681  """__repr__(ParticleStates self) -> std::string"""
1682  return _IMP_domino.ParticleStates___repr__(self)
1683 
1684 
1685  @staticmethod
1686  def get_from(o):
1687  return _object_cast_to_ParticleStates(o)
1688 
1689 
1690  def get_type_name(self):
1691  return self.__class__.__name__
1692  def do_show(self, out):
1693  pass
1694  def get_version_info(self):
1695  if"IMP::domino" == "IMP":
1696  return VersionInfo(self.__module__,
1697  __import__(self.__module__).get_module_version())
1698  else:
1699  return IMP.VersionInfo(self.__module__,
1700  __import__(self.__module__).get_module_version())
1701  @staticmethod
1702  def get_from(o):
1703  return _object_cast_to_ParticleStates(o)
1704 
1705  def __disown__(self):
1706  self.this.disown()
1707  _IMP_domino.disown_ParticleStates(self)
1708  return weakref_proxy(self)
1709 
1710  def do_destroy(self):
1711  """do_destroy(ParticleStates self)"""
1712  return _IMP_domino.ParticleStates_do_destroy(self)
1713 
1714 ParticleStates_swigregister = _IMP_domino.ParticleStates_swigregister
1715 ParticleStates_swigregister(ParticleStates)
1716 
1717 class ParticleStatesTable(IMP.Object):
1718  """Proxy of C++ IMP::domino::ParticleStatesTable class"""
1719  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1720 
1721  def __init__(self):
1722  """__init__(IMP::domino::ParticleStatesTable self) -> ParticleStatesTable"""
1723  this = _IMP_domino.new_ParticleStatesTable()
1724  try:
1725  self.this.append(this)
1726  except:
1727  self.this = this
1728 
1729  def get_particle_states(self, p):
1730  """get_particle_states(ParticleStatesTable self, Particle p) -> ParticleStates"""
1731  return _IMP_domino.ParticleStatesTable_get_particle_states(self, p)
1732 
1733 
1734  def get_has_particle(self, p):
1735  """get_has_particle(ParticleStatesTable self, Particle p) -> bool"""
1736  return _IMP_domino.ParticleStatesTable_get_has_particle(self, p)
1737 
1738 
1739  def get_particles(self):
1740  """get_particles(ParticleStatesTable self) -> IMP::ParticlesTemp"""
1741  return _IMP_domino.ParticleStatesTable_get_particles(self)
1742 
1743 
1744  def get_subset(self):
1745  """get_subset(ParticleStatesTable self) -> Subset"""
1746  return _IMP_domino.ParticleStatesTable_get_subset(self)
1747 
1748 
1749  def set_particle_states(self, p, e):
1750  """set_particle_states(ParticleStatesTable self, Particle p, ParticleStates e)"""
1751  return _IMP_domino.ParticleStatesTable_set_particle_states(self, p, e)
1752 
1753 
1754  def get_version_info(self):
1755  """get_version_info(ParticleStatesTable self) -> VersionInfo"""
1756  return _IMP_domino.ParticleStatesTable_get_version_info(self)
1757 
1758 
1759  def __str__(self):
1760  """__str__(ParticleStatesTable self) -> std::string"""
1761  return _IMP_domino.ParticleStatesTable___str__(self)
1762 
1763 
1764  def __repr__(self):
1765  """__repr__(ParticleStatesTable self) -> std::string"""
1766  return _IMP_domino.ParticleStatesTable___repr__(self)
1767 
1768 
1769  @staticmethod
1770  def get_from(o):
1771  return _object_cast_to_ParticleStatesTable(o)
1772 
1773 ParticleStatesTable_swigregister = _IMP_domino.ParticleStatesTable_swigregister
1774 ParticleStatesTable_swigregister(ParticleStatesTable)
1775 
1776 class IndexStates(ParticleStates):
1777  """Proxy of C++ IMP::domino::IndexStates class"""
1778  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1779 
1780  def __init__(self, *args):
1781  """
1782  __init__(IMP::domino::IndexStates self, unsigned int n, IntKey k) -> IndexStates
1783  __init__(IMP::domino::IndexStates self, unsigned int n) -> IndexStates
1784  """
1785  this = _IMP_domino.new_IndexStates(*args)
1786  try:
1787  self.this.append(this)
1788  except:
1789  self.this = this
1790 
1791  def get_version_info(self):
1792  """get_version_info(IndexStates self) -> VersionInfo"""
1793  return _IMP_domino.IndexStates_get_version_info(self)
1794 
1795 
1796  def __str__(self):
1797  """__str__(IndexStates self) -> std::string"""
1798  return _IMP_domino.IndexStates___str__(self)
1799 
1800 
1801  def __repr__(self):
1802  """__repr__(IndexStates self) -> std::string"""
1803  return _IMP_domino.IndexStates___repr__(self)
1804 
1805 
1806  @staticmethod
1807  def get_from(o):
1808  return _object_cast_to_IndexStates(o)
1809 
1810 IndexStates_swigregister = _IMP_domino.IndexStates_swigregister
1811 IndexStates_swigregister(IndexStates)
1812 
1813 class XYZStates(ParticleStates):
1814  """Proxy of C++ IMP::domino::XYZStates class"""
1815  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1816 
1817  def __init__(self, states):
1818  """__init__(IMP::domino::XYZStates self, IMP::algebra::Vector3Ds const & states) -> XYZStates"""
1819  this = _IMP_domino.new_XYZStates(states)
1820  try:
1821  self.this.append(this)
1822  except:
1823  self.this = this
1824 
1825  def get_vector(self, i):
1826  """get_vector(XYZStates self, unsigned int i) -> Vector3D"""
1827  return _IMP_domino.XYZStates_get_vector(self, i)
1828 
1829 
1830  def get_version_info(self):
1831  """get_version_info(XYZStates self) -> VersionInfo"""
1832  return _IMP_domino.XYZStates_get_version_info(self)
1833 
1834 
1835  def __str__(self):
1836  """__str__(XYZStates self) -> std::string"""
1837  return _IMP_domino.XYZStates___str__(self)
1838 
1839 
1840  def __repr__(self):
1841  """__repr__(XYZStates self) -> std::string"""
1842  return _IMP_domino.XYZStates___repr__(self)
1843 
1844 
1845  @staticmethod
1846  def get_from(o):
1847  return _object_cast_to_XYZStates(o)
1848 
1849 XYZStates_swigregister = _IMP_domino.XYZStates_swigregister
1850 XYZStates_swigregister(XYZStates)
1851 
1852 class RigidBodyStates(ParticleStates):
1853  """Proxy of C++ IMP::domino::RigidBodyStates class"""
1854  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1855 
1856  def __init__(self, states, scale=1):
1857  """
1858  __init__(IMP::domino::RigidBodyStates self, IMP::algebra::ReferenceFrame3Ds const & states, double scale=1) -> RigidBodyStates
1859  __init__(IMP::domino::RigidBodyStates self, IMP::algebra::ReferenceFrame3Ds const & states) -> RigidBodyStates
1860  """
1861  this = _IMP_domino.new_RigidBodyStates(states, scale)
1862  try:
1863  self.this.append(this)
1864  except:
1865  self.this = this
1866 
1867  def get_reference_frame(self, i):
1868  """get_reference_frame(RigidBodyStates self, unsigned int i) -> ReferenceFrame3D"""
1869  return _IMP_domino.RigidBodyStates_get_reference_frame(self, i)
1870 
1871 
1872  def get_version_info(self):
1873  """get_version_info(RigidBodyStates self) -> VersionInfo"""
1874  return _IMP_domino.RigidBodyStates_get_version_info(self)
1875 
1876 
1877  def __str__(self):
1878  """__str__(RigidBodyStates self) -> std::string"""
1879  return _IMP_domino.RigidBodyStates___str__(self)
1880 
1881 
1882  def __repr__(self):
1883  """__repr__(RigidBodyStates self) -> std::string"""
1884  return _IMP_domino.RigidBodyStates___repr__(self)
1885 
1886 
1887  @staticmethod
1888  def get_from(o):
1889  return _object_cast_to_RigidBodyStates(o)
1890 
1891 RigidBodyStates_swigregister = _IMP_domino.RigidBodyStates_swigregister
1892 RigidBodyStates_swigregister(RigidBodyStates)
1893 
1894 class NestedRigidBodyStates(ParticleStates):
1895  """Proxy of C++ IMP::domino::NestedRigidBodyStates class"""
1896  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1897 
1898  def __init__(self, states, scale=100):
1899  """
1900  __init__(IMP::domino::NestedRigidBodyStates self, IMP::algebra::Transformation3Ds const & states, double scale=100) -> NestedRigidBodyStates
1901  __init__(IMP::domino::NestedRigidBodyStates self, IMP::algebra::Transformation3Ds const & states) -> NestedRigidBodyStates
1902  """
1903  this = _IMP_domino.new_NestedRigidBodyStates(states, scale)
1904  try:
1905  self.this.append(this)
1906  except:
1907  self.this = this
1908 
1909  def get_transformation(self, i):
1910  """get_transformation(NestedRigidBodyStates self, unsigned int i) -> Transformation3D"""
1911  return _IMP_domino.NestedRigidBodyStates_get_transformation(self, i)
1912 
1913 
1914  def get_version_info(self):
1915  """get_version_info(NestedRigidBodyStates self) -> VersionInfo"""
1916  return _IMP_domino.NestedRigidBodyStates_get_version_info(self)
1917 
1918 
1919  def __str__(self):
1920  """__str__(NestedRigidBodyStates self) -> std::string"""
1921  return _IMP_domino.NestedRigidBodyStates___str__(self)
1922 
1923 
1924  def __repr__(self):
1925  """__repr__(NestedRigidBodyStates self) -> std::string"""
1926  return _IMP_domino.NestedRigidBodyStates___repr__(self)
1927 
1928 
1929  @staticmethod
1930  def get_from(o):
1931  return _object_cast_to_NestedRigidBodyStates(o)
1932 
1933 NestedRigidBodyStates_swigregister = _IMP_domino.NestedRigidBodyStates_swigregister
1934 NestedRigidBodyStates_swigregister(NestedRigidBodyStates)
1935 
1936 class CompoundStates(ParticleStates):
1937  """Proxy of C++ IMP::domino::CompoundStates class"""
1938  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1939 
1940  def __init__(self, a, b):
1941  """__init__(IMP::domino::CompoundStates self, ParticleStates a, ParticleStates b) -> CompoundStates"""
1942  this = _IMP_domino.new_CompoundStates(a, b)
1943  try:
1944  self.this.append(this)
1945  except:
1946  self.this = this
1947 
1948  def get_version_info(self):
1949  """get_version_info(CompoundStates self) -> VersionInfo"""
1950  return _IMP_domino.CompoundStates_get_version_info(self)
1951 
1952 
1953  def __str__(self):
1954  """__str__(CompoundStates self) -> std::string"""
1955  return _IMP_domino.CompoundStates___str__(self)
1956 
1957 
1958  def __repr__(self):
1959  """__repr__(CompoundStates self) -> std::string"""
1960  return _IMP_domino.CompoundStates___repr__(self)
1961 
1962 
1963  @staticmethod
1964  def get_from(o):
1965  return _object_cast_to_CompoundStates(o)
1966 
1967 CompoundStates_swigregister = _IMP_domino.CompoundStates_swigregister
1968 CompoundStates_swigregister(CompoundStates)
1969 
1970 class RecursiveStates(ParticleStates):
1971  """Proxy of C++ IMP::domino::RecursiveStates class"""
1972  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1973 
1974  def __init__(self, p, s, ss, pst):
1975  """__init__(IMP::domino::RecursiveStates self, Particle p, Subset s, IMP::domino::Assignments const & ss, ParticleStatesTable pst) -> RecursiveStates"""
1976  this = _IMP_domino.new_RecursiveStates(p, s, ss, pst)
1977  try:
1978  self.this.append(this)
1979  except:
1980  self.this = this
1981 
1982  def get_version_info(self):
1983  """get_version_info(RecursiveStates self) -> VersionInfo"""
1984  return _IMP_domino.RecursiveStates_get_version_info(self)
1985 
1986 
1987  def __str__(self):
1988  """__str__(RecursiveStates self) -> std::string"""
1989  return _IMP_domino.RecursiveStates___str__(self)
1990 
1991 
1992  def __repr__(self):
1993  """__repr__(RecursiveStates self) -> std::string"""
1994  return _IMP_domino.RecursiveStates___repr__(self)
1995 
1996 
1997  @staticmethod
1998  def get_from(o):
1999  return _object_cast_to_RecursiveStates(o)
2000 
2001 RecursiveStates_swigregister = _IMP_domino.RecursiveStates_swigregister
2002 RecursiveStates_swigregister(RecursiveStates)
2003 
2004 class PermutationStates(ParticleStates):
2005  """Proxy of C++ IMP::domino::PermutationStates class"""
2006  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2007 
2008  def __init__(self, inner):
2009  """__init__(IMP::domino::PermutationStates self, ParticleStates inner) -> PermutationStates"""
2010  this = _IMP_domino.new_PermutationStates(inner)
2011  try:
2012  self.this.append(this)
2013  except:
2014  self.this = this
2015 
2016  def get_inner_state(self, i):
2017  """get_inner_state(PermutationStates self, unsigned int i) -> unsigned int"""
2018  return _IMP_domino.PermutationStates_get_inner_state(self, i)
2019 
2020 
2021  def get_version_info(self):
2022  """get_version_info(PermutationStates self) -> VersionInfo"""
2023  return _IMP_domino.PermutationStates_get_version_info(self)
2024 
2025 
2026  def __str__(self):
2027  """__str__(PermutationStates self) -> std::string"""
2028  return _IMP_domino.PermutationStates___str__(self)
2029 
2030 
2031  def __repr__(self):
2032  """__repr__(PermutationStates self) -> std::string"""
2033  return _IMP_domino.PermutationStates___repr__(self)
2034 
2035 
2036  @staticmethod
2037  def get_from(o):
2038  return _object_cast_to_PermutationStates(o)
2039 
2040 PermutationStates_swigregister = _IMP_domino.PermutationStates_swigregister
2041 PermutationStates_swigregister(PermutationStates)
2042 
2043 class _ParticlesAdaptor(IMP._InputAdaptor):
2044  """Proxy of C++ IMP::domino::ParticlesAdaptor class"""
2045  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2046  __repr__ = _swig_repr
2047 
2048  def __init__(self, *args):
2049  """
2050  ParticlesAdaptor(ParticleStatesTable pst) -> _ParticlesAdaptor
2051  __init__(IMP::domino::ParticlesAdaptor self, IMP::ParticlesTemp const & ps) -> _ParticlesAdaptor
2052  """
2053  this = _IMP_domino.new__ParticlesAdaptor(*args)
2054  try:
2055  self.this.append(this)
2056  except:
2057  self.this = this
2058  __swig_destroy__ = _IMP_domino.delete__ParticlesAdaptor
2059  __del__ = lambda self: None
2060 _ParticlesAdaptor_swigregister = _IMP_domino._ParticlesAdaptor_swigregister
2061 _ParticlesAdaptor_swigregister(_ParticlesAdaptor)
2062 
2063 class RestraintCache(IMP.Object):
2064  """Proxy of C++ IMP::domino::RestraintCache class"""
2065  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2066 
2067  def __init__(self, *args):
2068  """
2069  __init__(IMP::domino::RestraintCache self, ParticleStatesTable pst, unsigned int size) -> RestraintCache
2070  __init__(IMP::domino::RestraintCache self, ParticleStatesTable pst) -> RestraintCache
2071  """
2072  this = _IMP_domino.new_RestraintCache(*args)
2073  try:
2074  self.this.append(this)
2075  except:
2076  self.this = this
2077 
2078  def add_restraints(self, rs):
2079  """add_restraints(RestraintCache self, _RestraintsAdaptor rs)"""
2080  return _IMP_domino.RestraintCache_add_restraints(self, rs)
2081 
2082 
2083  def get_score(self, *args):
2084  """
2085  get_score(RestraintCache self, Restraint r, Assignment a) -> double
2086  get_score(RestraintCache self, Restraint r, Subset s, Assignment a) -> double
2087  """
2088  return _IMP_domino.RestraintCache_get_score(self, *args)
2089 
2090 
2091  def load_last_score(self, r, s, a):
2092  """load_last_score(RestraintCache self, Restraint r, Subset s, Assignment a)"""
2093  return _IMP_domino.RestraintCache_load_last_score(self, r, s, a)
2094 
2095 
2096  def get_restraints(self, *args):
2097  """
2098  get_restraints(RestraintCache self, Subset s, IMP::domino::Subsets const & exclusions) -> IMP::RestraintsTemp
2099  get_restraints(RestraintCache self) -> IMP::RestraintsTemp
2100  """
2101  return _IMP_domino.RestraintCache_get_restraints(self, *args)
2102 
2103 
2104  def save_cache(self, particle_ordering, restraints, group, max_entries):
2105  """save_cache(RestraintCache self, IMP::ParticlesTemp const & particle_ordering, IMP::RestraintsTemp const & restraints, Group group, unsigned int max_entries)"""
2106  return _IMP_domino.RestraintCache_save_cache(self, particle_ordering, restraints, group, max_entries)
2107 
2108 
2109  def load_cache(self, ps, group):
2110  """load_cache(RestraintCache self, IMP::ParticlesTemp const & ps, ConstGroup group)"""
2111  return _IMP_domino.RestraintCache_load_cache(self, ps, group)
2112 
2113 
2114  def get_slice(self, r, s):
2115  """get_slice(RestraintCache self, Restraint r, Subset s) -> Slice"""
2116  return _IMP_domino.RestraintCache_get_slice(self, r, s)
2117 
2118 
2119  def get_number_of_entries(self):
2120  """get_number_of_entries(RestraintCache self) -> unsigned int"""
2121  return _IMP_domino.RestraintCache_get_number_of_entries(self)
2122 
2123 
2124  def validate(self):
2125  """validate(RestraintCache self)"""
2126  return _IMP_domino.RestraintCache_validate(self)
2127 
2128 
2129  def show_restraint_information(self, *args):
2130  """
2131  show_restraint_information(RestraintCache self, _ostream out)
2132  show_restraint_information(RestraintCache self)
2133  """
2134  return _IMP_domino.RestraintCache_show_restraint_information(self, *args)
2135 
2136 
2137  def get_hit_rate(self):
2138  """get_hit_rate(RestraintCache self) -> double"""
2139  return _IMP_domino.RestraintCache_get_hit_rate(self)
2140 
2141 
2142  def get_version_info(self):
2143  """get_version_info(RestraintCache self) -> VersionInfo"""
2144  return _IMP_domino.RestraintCache_get_version_info(self)
2145 
2146 
2147  def __str__(self):
2148  """__str__(RestraintCache self) -> std::string"""
2149  return _IMP_domino.RestraintCache___str__(self)
2150 
2151 
2152  def __repr__(self):
2153  """__repr__(RestraintCache self) -> std::string"""
2154  return _IMP_domino.RestraintCache___repr__(self)
2155 
2156 
2157  @staticmethod
2158  def get_from(o):
2159  return _object_cast_to_RestraintCache(o)
2160 
2161 RestraintCache_swigregister = _IMP_domino.RestraintCache_swigregister
2162 RestraintCache_swigregister(RestraintCache)
2163 
2164 class SubsetFilter(IMP.Object):
2165  """Proxy of C++ IMP::domino::SubsetFilter class"""
2166  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2167 
2168  def __init__(self, *args):
2169  """
2170  __init__(IMP::domino::SubsetFilter self, std::string name) -> SubsetFilter
2171  __init__(IMP::domino::SubsetFilter self) -> SubsetFilter
2172  """
2173  if self.__class__ == SubsetFilter:
2174  _self = None
2175  else:
2176  _self = self
2177  this = _IMP_domino.new_SubsetFilter(_self, *args)
2178  try:
2179  self.this.append(this)
2180  except:
2181  self.this = this
2182 
2183  if self.__class__ != SubsetFilter:
2184  _director_objects.register(self)
2185 
2186 
2187 
2188 
2189  def get_is_ok(self, state):
2190  """get_is_ok(SubsetFilter self, Assignment state) -> bool"""
2191  return _IMP_domino.SubsetFilter_get_is_ok(self, state)
2192 
2193 
2194  def get_next_state(self, pos, state):
2195  """get_next_state(SubsetFilter self, int pos, Assignment state) -> int"""
2196  return _IMP_domino.SubsetFilter_get_next_state(self, pos, state)
2197 
2198  __swig_destroy__ = _IMP_domino.delete_SubsetFilter
2199  __del__ = lambda self: None
2200 
2201  def __str__(self):
2202  """__str__(SubsetFilter self) -> std::string"""
2203  return _IMP_domino.SubsetFilter___str__(self)
2204 
2205 
2206  def __repr__(self):
2207  """__repr__(SubsetFilter self) -> std::string"""
2208  return _IMP_domino.SubsetFilter___repr__(self)
2209 
2210 
2211  @staticmethod
2212  def get_from(o):
2213  return _object_cast_to_SubsetFilter(o)
2214 
2215 
2216  def get_type_name(self):
2217  return self.__class__.__name__
2218  def do_show(self, out):
2219  pass
2220  def get_version_info(self):
2221  if"IMP::domino" == "IMP":
2222  return VersionInfo(self.__module__,
2223  __import__(self.__module__).get_module_version())
2224  else:
2225  return IMP.VersionInfo(self.__module__,
2226  __import__(self.__module__).get_module_version())
2227  @staticmethod
2228  def get_from(o):
2229  return _object_cast_to_SubsetFilter(o)
2230 
2231  def __disown__(self):
2232  self.this.disown()
2233  _IMP_domino.disown_SubsetFilter(self)
2234  return weakref_proxy(self)
2235 
2236  def do_destroy(self):
2237  """do_destroy(SubsetFilter self)"""
2238  return _IMP_domino.SubsetFilter_do_destroy(self)
2239 
2240 SubsetFilter_swigregister = _IMP_domino.SubsetFilter_swigregister
2241 SubsetFilter_swigregister(SubsetFilter)
2242 
2243 class SubsetFilterTable(IMP.Object):
2244  """Proxy of C++ IMP::domino::SubsetFilterTable class"""
2245  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2246 
2247  def __init__(self, *args):
2248  """
2249  __init__(IMP::domino::SubsetFilterTable self, std::string name) -> SubsetFilterTable
2250  __init__(IMP::domino::SubsetFilterTable self) -> SubsetFilterTable
2251  """
2252  if self.__class__ == SubsetFilterTable:
2253  _self = None
2254  else:
2255  _self = self
2256  this = _IMP_domino.new_SubsetFilterTable(_self, *args)
2257  try:
2258  self.this.append(this)
2259  except:
2260  self.this = this
2261 
2262  if self.__class__ != SubsetFilterTable:
2263  _director_objects.register(self)
2264 
2265 
2266 
2267 
2268  def get_subset_filter(self, s, prior_subsets):
2269  """get_subset_filter(SubsetFilterTable self, Subset s, IMP::domino::Subsets const & prior_subsets) -> SubsetFilter"""
2270  return _IMP_domino.SubsetFilterTable_get_subset_filter(self, s, prior_subsets)
2271 
2272 
2273  def get_strength(self, s, prior_subsets):
2274  """get_strength(SubsetFilterTable self, Subset s, IMP::domino::Subsets const & prior_subsets) -> double"""
2275  return _IMP_domino.SubsetFilterTable_get_strength(self, s, prior_subsets)
2276 
2277  __swig_destroy__ = _IMP_domino.delete_SubsetFilterTable
2278  __del__ = lambda self: None
2279 
2280  def __str__(self):
2281  """__str__(SubsetFilterTable self) -> std::string"""
2282  return _IMP_domino.SubsetFilterTable___str__(self)
2283 
2284 
2285  def __repr__(self):
2286  """__repr__(SubsetFilterTable self) -> std::string"""
2287  return _IMP_domino.SubsetFilterTable___repr__(self)
2288 
2289 
2290  @staticmethod
2291  def get_from(o):
2292  return _object_cast_to_SubsetFilterTable(o)
2293 
2294 
2295  def get_type_name(self):
2296  return self.__class__.__name__
2297  def do_show(self, out):
2298  pass
2299  def get_version_info(self):
2300  if"IMP::domino" == "IMP":
2301  return VersionInfo(self.__module__,
2302  __import__(self.__module__).get_module_version())
2303  else:
2304  return IMP.VersionInfo(self.__module__,
2305  __import__(self.__module__).get_module_version())
2306  @staticmethod
2307  def get_from(o):
2308  return _object_cast_to_SubsetFilterTable(o)
2309 
2310  def __disown__(self):
2311  self.this.disown()
2312  _IMP_domino.disown_SubsetFilterTable(self)
2313  return weakref_proxy(self)
2314 
2315  def do_destroy(self):
2316  """do_destroy(SubsetFilterTable self)"""
2317  return _IMP_domino.SubsetFilterTable_do_destroy(self)
2318 
2319 SubsetFilterTable_swigregister = _IMP_domino.SubsetFilterTable_swigregister
2320 SubsetFilterTable_swigregister(SubsetFilterTable)
2321 
2322 class RestraintScoreSubsetFilterTable(SubsetFilterTable):
2323  """Proxy of C++ IMP::domino::RestraintScoreSubsetFilterTable class"""
2324  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2325 
2326  def __init__(self, *args):
2327  """
2328  __init__(IMP::domino::RestraintScoreSubsetFilterTable self, RestraintCache rc) -> RestraintScoreSubsetFilterTable
2329  __init__(IMP::domino::RestraintScoreSubsetFilterTable self, _RestraintsAdaptor rs, ParticleStatesTable pst) -> RestraintScoreSubsetFilterTable
2330  """
2331  this = _IMP_domino.new_RestraintScoreSubsetFilterTable(*args)
2332  try:
2333  self.this.append(this)
2334  except:
2335  self.this = this
2336 
2337  def get_version_info(self):
2338  """get_version_info(RestraintScoreSubsetFilterTable self) -> VersionInfo"""
2339  return _IMP_domino.RestraintScoreSubsetFilterTable_get_version_info(self)
2340 
2341 
2342  def __str__(self):
2343  """__str__(RestraintScoreSubsetFilterTable self) -> std::string"""
2344  return _IMP_domino.RestraintScoreSubsetFilterTable___str__(self)
2345 
2346 
2347  def __repr__(self):
2348  """__repr__(RestraintScoreSubsetFilterTable self) -> std::string"""
2349  return _IMP_domino.RestraintScoreSubsetFilterTable___repr__(self)
2350 
2351 
2352  @staticmethod
2353  def get_from(o):
2354  return _object_cast_to_RestraintScoreSubsetFilterTable(o)
2355 
2356 RestraintScoreSubsetFilterTable_swigregister = _IMP_domino.RestraintScoreSubsetFilterTable_swigregister
2357 RestraintScoreSubsetFilterTable_swigregister(RestraintScoreSubsetFilterTable)
2358 
2359 class MinimumRestraintScoreSubsetFilterTable(SubsetFilterTable):
2360  """Proxy of C++ IMP::domino::MinimumRestraintScoreSubsetFilterTable class"""
2361  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2362 
2363  def __init__(self, rs, rc, max_number_allowed_violations):
2364  """__init__(IMP::domino::MinimumRestraintScoreSubsetFilterTable self, IMP::RestraintsTemp const & rs, RestraintCache rc, int max_number_allowed_violations) -> MinimumRestraintScoreSubsetFilterTable"""
2365  this = _IMP_domino.new_MinimumRestraintScoreSubsetFilterTable(rs, rc, max_number_allowed_violations)
2366  try:
2367  self.this.append(this)
2368  except:
2369  self.this = this
2370 
2371  def get_maximum_number_of_violated_restraints(self):
2372  """get_maximum_number_of_violated_restraints(MinimumRestraintScoreSubsetFilterTable self) -> int"""
2373  return _IMP_domino.MinimumRestraintScoreSubsetFilterTable_get_maximum_number_of_violated_restraints(self)
2374 
2375 
2376  def get_version_info(self):
2377  """get_version_info(MinimumRestraintScoreSubsetFilterTable self) -> VersionInfo"""
2378  return _IMP_domino.MinimumRestraintScoreSubsetFilterTable_get_version_info(self)
2379 
2380 
2381  def __str__(self):
2382  """__str__(MinimumRestraintScoreSubsetFilterTable self) -> std::string"""
2383  return _IMP_domino.MinimumRestraintScoreSubsetFilterTable___str__(self)
2384 
2385 
2386  def __repr__(self):
2387  """__repr__(MinimumRestraintScoreSubsetFilterTable self) -> std::string"""
2388  return _IMP_domino.MinimumRestraintScoreSubsetFilterTable___repr__(self)
2389 
2390 
2391  @staticmethod
2392  def get_from(o):
2393  return _object_cast_to_MinimumRestraintScoreSubsetFilterTable(o)
2394 
2395 MinimumRestraintScoreSubsetFilterTable_swigregister = _IMP_domino.MinimumRestraintScoreSubsetFilterTable_swigregister
2396 MinimumRestraintScoreSubsetFilterTable_swigregister(MinimumRestraintScoreSubsetFilterTable)
2397 
2398 class DisjointSetsSubsetFilterTable(SubsetFilterTable):
2399  """Proxy of C++ IMP::domino::DisjointSetsSubsetFilterTable class"""
2400  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2401 
2402  def __init__(self, *args, **kwargs):
2403  raise AttributeError("No constructor defined - class is abstract")
2404 
2405  def add_set(self, ps):
2406  """add_set(DisjointSetsSubsetFilterTable self, IMP::ParticlesTemp const & ps)"""
2407  return _IMP_domino.DisjointSetsSubsetFilterTable_add_set(self, ps)
2408 
2409 
2410  def add_pair(self, pp):
2411  """add_pair(DisjointSetsSubsetFilterTable self, IMP::ParticlePair const & pp)"""
2412  return _IMP_domino.DisjointSetsSubsetFilterTable_add_pair(self, pp)
2413 
2414 
2415  def __str__(self):
2416  """__str__(DisjointSetsSubsetFilterTable self) -> std::string"""
2417  return _IMP_domino.DisjointSetsSubsetFilterTable___str__(self)
2418 
2419 
2420  def __repr__(self):
2421  """__repr__(DisjointSetsSubsetFilterTable self) -> std::string"""
2422  return _IMP_domino.DisjointSetsSubsetFilterTable___repr__(self)
2423 
2424 
2425  @staticmethod
2426  def get_from(o):
2427  return _object_cast_to_DisjointSetsSubsetFilterTable(o)
2428 
2429  __swig_destroy__ = _IMP_domino.delete_DisjointSetsSubsetFilterTable
2430  __del__ = lambda self: None
2431 DisjointSetsSubsetFilterTable_swigregister = _IMP_domino.DisjointSetsSubsetFilterTable_swigregister
2432 DisjointSetsSubsetFilterTable_swigregister(DisjointSetsSubsetFilterTable)
2433 
2434 class ExclusionSubsetFilterTable(DisjointSetsSubsetFilterTable):
2435  """Proxy of C++ IMP::domino::ExclusionSubsetFilterTable class"""
2436  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2437 
2438  def __init__(self, *args):
2439  """
2440  __init__(IMP::domino::ExclusionSubsetFilterTable self, ParticleStatesTable pst) -> ExclusionSubsetFilterTable
2441  __init__(IMP::domino::ExclusionSubsetFilterTable self) -> ExclusionSubsetFilterTable
2442  """
2443  this = _IMP_domino.new_ExclusionSubsetFilterTable(*args)
2444  try:
2445  self.this.append(this)
2446  except:
2447  self.this = this
2448 
2449  def get_version_info(self):
2450  """get_version_info(ExclusionSubsetFilterTable self) -> VersionInfo"""
2451  return _IMP_domino.ExclusionSubsetFilterTable_get_version_info(self)
2452 
2453 
2454  def __str__(self):
2455  """__str__(ExclusionSubsetFilterTable self) -> std::string"""
2456  return _IMP_domino.ExclusionSubsetFilterTable___str__(self)
2457 
2458 
2459  def __repr__(self):
2460  """__repr__(ExclusionSubsetFilterTable self) -> std::string"""
2461  return _IMP_domino.ExclusionSubsetFilterTable___repr__(self)
2462 
2463 
2464  @staticmethod
2465  def get_from(o):
2466  return _object_cast_to_ExclusionSubsetFilterTable(o)
2467 
2468 ExclusionSubsetFilterTable_swigregister = _IMP_domino.ExclusionSubsetFilterTable_swigregister
2469 ExclusionSubsetFilterTable_swigregister(ExclusionSubsetFilterTable)
2470 
2471 class EqualitySubsetFilterTable(DisjointSetsSubsetFilterTable):
2472  """Proxy of C++ IMP::domino::EqualitySubsetFilterTable class"""
2473  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2474 
2475  def __init__(self, *args):
2476  """
2477  __init__(IMP::domino::EqualitySubsetFilterTable self, ParticleStatesTable pst) -> EqualitySubsetFilterTable
2478  __init__(IMP::domino::EqualitySubsetFilterTable self) -> EqualitySubsetFilterTable
2479  """
2480  this = _IMP_domino.new_EqualitySubsetFilterTable(*args)
2481  try:
2482  self.this.append(this)
2483  except:
2484  self.this = this
2485 
2486  def get_version_info(self):
2487  """get_version_info(EqualitySubsetFilterTable self) -> VersionInfo"""
2488  return _IMP_domino.EqualitySubsetFilterTable_get_version_info(self)
2489 
2490 
2491  def __str__(self):
2492  """__str__(EqualitySubsetFilterTable self) -> std::string"""
2493  return _IMP_domino.EqualitySubsetFilterTable___str__(self)
2494 
2495 
2496  def __repr__(self):
2497  """__repr__(EqualitySubsetFilterTable self) -> std::string"""
2498  return _IMP_domino.EqualitySubsetFilterTable___repr__(self)
2499 
2500 
2501  @staticmethod
2502  def get_from(o):
2503  return _object_cast_to_EqualitySubsetFilterTable(o)
2504 
2505 EqualitySubsetFilterTable_swigregister = _IMP_domino.EqualitySubsetFilterTable_swigregister
2506 EqualitySubsetFilterTable_swigregister(EqualitySubsetFilterTable)
2507 
2508 class EquivalenceSubsetFilterTable(DisjointSetsSubsetFilterTable):
2509  """Proxy of C++ IMP::domino::EquivalenceSubsetFilterTable class"""
2510  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2511 
2512  def __init__(self, *args):
2513  """
2514  __init__(IMP::domino::EquivalenceSubsetFilterTable self, ParticleStatesTable pst) -> EquivalenceSubsetFilterTable
2515  __init__(IMP::domino::EquivalenceSubsetFilterTable self) -> EquivalenceSubsetFilterTable
2516  """
2517  this = _IMP_domino.new_EquivalenceSubsetFilterTable(*args)
2518  try:
2519  self.this.append(this)
2520  except:
2521  self.this = this
2522 
2523  def get_version_info(self):
2524  """get_version_info(EquivalenceSubsetFilterTable self) -> VersionInfo"""
2525  return _IMP_domino.EquivalenceSubsetFilterTable_get_version_info(self)
2526 
2527 
2528  def __str__(self):
2529  """__str__(EquivalenceSubsetFilterTable self) -> std::string"""
2530  return _IMP_domino.EquivalenceSubsetFilterTable___str__(self)
2531 
2532 
2533  def __repr__(self):
2534  """__repr__(EquivalenceSubsetFilterTable self) -> std::string"""
2535  return _IMP_domino.EquivalenceSubsetFilterTable___repr__(self)
2536 
2537 
2538  @staticmethod
2539  def get_from(o):
2540  return _object_cast_to_EquivalenceSubsetFilterTable(o)
2541 
2542 EquivalenceSubsetFilterTable_swigregister = _IMP_domino.EquivalenceSubsetFilterTable_swigregister
2543 EquivalenceSubsetFilterTable_swigregister(EquivalenceSubsetFilterTable)
2544 
2545 class EquivalenceAndExclusionSubsetFilterTable(DisjointSetsSubsetFilterTable):
2546  """Proxy of C++ IMP::domino::EquivalenceAndExclusionSubsetFilterTable class"""
2547  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2548 
2549  def __init__(self, *args):
2550  """
2551  __init__(IMP::domino::EquivalenceAndExclusionSubsetFilterTable self, ParticleStatesTable pst) -> EquivalenceAndExclusionSubsetFilterTable
2552  __init__(IMP::domino::EquivalenceAndExclusionSubsetFilterTable self) -> EquivalenceAndExclusionSubsetFilterTable
2553  """
2554  this = _IMP_domino.new_EquivalenceAndExclusionSubsetFilterTable(*args)
2555  try:
2556  self.this.append(this)
2557  except:
2558  self.this = this
2559 
2560  def get_version_info(self):
2561  """get_version_info(EquivalenceAndExclusionSubsetFilterTable self) -> VersionInfo"""
2562  return _IMP_domino.EquivalenceAndExclusionSubsetFilterTable_get_version_info(self)
2563 
2564 
2565  def __str__(self):
2566  """__str__(EquivalenceAndExclusionSubsetFilterTable self) -> std::string"""
2567  return _IMP_domino.EquivalenceAndExclusionSubsetFilterTable___str__(self)
2568 
2569 
2570  def __repr__(self):
2571  """__repr__(EquivalenceAndExclusionSubsetFilterTable self) -> std::string"""
2572  return _IMP_domino.EquivalenceAndExclusionSubsetFilterTable___repr__(self)
2573 
2574 
2575  @staticmethod
2576  def get_from(o):
2577  return _object_cast_to_EquivalenceAndExclusionSubsetFilterTable(o)
2578 
2579 EquivalenceAndExclusionSubsetFilterTable_swigregister = _IMP_domino.EquivalenceAndExclusionSubsetFilterTable_swigregister
2580 EquivalenceAndExclusionSubsetFilterTable_swigregister(EquivalenceAndExclusionSubsetFilterTable)
2581 
2582 class ListSubsetFilterTable(SubsetFilterTable):
2583  """Proxy of C++ IMP::domino::ListSubsetFilterTable class"""
2584  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2585 
2586  def __init__(self, pst):
2587  """__init__(IMP::domino::ListSubsetFilterTable self, ParticleStatesTable pst) -> ListSubsetFilterTable"""
2588  this = _IMP_domino.new_ListSubsetFilterTable(pst)
2589  try:
2590  self.this.append(this)
2591  except:
2592  self.this = this
2593 
2594  def get_ok_rate(self):
2595  """get_ok_rate(ListSubsetFilterTable self) -> double"""
2596  return _IMP_domino.ListSubsetFilterTable_get_ok_rate(self)
2597 
2598 
2599  def get_number_of_particle_states(self, p):
2600  """get_number_of_particle_states(ListSubsetFilterTable self, Particle p) -> unsigned int"""
2601  return _IMP_domino.ListSubsetFilterTable_get_number_of_particle_states(self, p)
2602 
2603 
2604  def set_allowed_states(self, p, states):
2605  """set_allowed_states(ListSubsetFilterTable self, Particle p, IMP::Ints const & states)"""
2606  return _IMP_domino.ListSubsetFilterTable_set_allowed_states(self, p, states)
2607 
2608 
2609  def get_version_info(self):
2610  """get_version_info(ListSubsetFilterTable self) -> VersionInfo"""
2611  return _IMP_domino.ListSubsetFilterTable_get_version_info(self)
2612 
2613 
2614  def __str__(self):
2615  """__str__(ListSubsetFilterTable self) -> std::string"""
2616  return _IMP_domino.ListSubsetFilterTable___str__(self)
2617 
2618 
2619  def __repr__(self):
2620  """__repr__(ListSubsetFilterTable self) -> std::string"""
2621  return _IMP_domino.ListSubsetFilterTable___repr__(self)
2622 
2623 
2624  @staticmethod
2625  def get_from(o):
2626  return _object_cast_to_ListSubsetFilterTable(o)
2627 
2628 ListSubsetFilterTable_swigregister = _IMP_domino.ListSubsetFilterTable_swigregister
2629 ListSubsetFilterTable_swigregister(ListSubsetFilterTable)
2630 
2631 class PairListSubsetFilterTable(SubsetFilterTable):
2632  """Proxy of C++ IMP::domino::PairListSubsetFilterTable class"""
2633  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2634 
2635  def __init__(self):
2636  """__init__(IMP::domino::PairListSubsetFilterTable self) -> PairListSubsetFilterTable"""
2637  this = _IMP_domino.new_PairListSubsetFilterTable()
2638  try:
2639  self.this.append(this)
2640  except:
2641  self.this = this
2642 
2643  def set_allowed_states(self, p, states):
2644  """set_allowed_states(PairListSubsetFilterTable self, IMP::ParticlePair p, IMP::IntPairs const & states)"""
2645  return _IMP_domino.PairListSubsetFilterTable_set_allowed_states(self, p, states)
2646 
2647 
2648  def get_version_info(self):
2649  """get_version_info(PairListSubsetFilterTable self) -> VersionInfo"""
2650  return _IMP_domino.PairListSubsetFilterTable_get_version_info(self)
2651 
2652 
2653  def __str__(self):
2654  """__str__(PairListSubsetFilterTable self) -> std::string"""
2655  return _IMP_domino.PairListSubsetFilterTable___str__(self)
2656 
2657 
2658  def __repr__(self):
2659  """__repr__(PairListSubsetFilterTable self) -> std::string"""
2660  return _IMP_domino.PairListSubsetFilterTable___repr__(self)
2661 
2662 
2663  @staticmethod
2664  def get_from(o):
2665  return _object_cast_to_PairListSubsetFilterTable(o)
2666 
2667 PairListSubsetFilterTable_swigregister = _IMP_domino.PairListSubsetFilterTable_swigregister
2668 PairListSubsetFilterTable_swigregister(PairListSubsetFilterTable)
2669 
2670 class ProbabilisticSubsetFilterTable(SubsetFilterTable):
2671  """Proxy of C++ IMP::domino::ProbabilisticSubsetFilterTable class"""
2672  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2673 
2674  def __init__(self, p, leaves_only=False):
2675  """
2676  __init__(IMP::domino::ProbabilisticSubsetFilterTable self, double p, bool leaves_only=False) -> ProbabilisticSubsetFilterTable
2677  __init__(IMP::domino::ProbabilisticSubsetFilterTable self, double p) -> ProbabilisticSubsetFilterTable
2678  """
2679  this = _IMP_domino.new_ProbabilisticSubsetFilterTable(p, leaves_only)
2680  try:
2681  self.this.append(this)
2682  except:
2683  self.this = this
2684 
2685  def get_version_info(self):
2686  """get_version_info(ProbabilisticSubsetFilterTable self) -> VersionInfo"""
2687  return _IMP_domino.ProbabilisticSubsetFilterTable_get_version_info(self)
2688 
2689 
2690  def __str__(self):
2691  """__str__(ProbabilisticSubsetFilterTable self) -> std::string"""
2692  return _IMP_domino.ProbabilisticSubsetFilterTable___str__(self)
2693 
2694 
2695  def __repr__(self):
2696  """__repr__(ProbabilisticSubsetFilterTable self) -> std::string"""
2697  return _IMP_domino.ProbabilisticSubsetFilterTable___repr__(self)
2698 
2699 
2700  @staticmethod
2701  def get_from(o):
2702  return _object_cast_to_ProbabilisticSubsetFilterTable(o)
2703 
2704 ProbabilisticSubsetFilterTable_swigregister = _IMP_domino.ProbabilisticSubsetFilterTable_swigregister
2705 ProbabilisticSubsetFilterTable_swigregister(ProbabilisticSubsetFilterTable)
2706 
2707 class AssignmentContainer(IMP.Object):
2708  """Proxy of C++ IMP::domino::AssignmentContainer class"""
2709  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2710 
2711  def __init__(self, *args):
2712  """
2713  __init__(IMP::domino::AssignmentContainer self, std::string name) -> AssignmentContainer
2714  __init__(IMP::domino::AssignmentContainer self) -> AssignmentContainer
2715  """
2716  if self.__class__ == AssignmentContainer:
2717  _self = None
2718  else:
2719  _self = self
2720  this = _IMP_domino.new_AssignmentContainer(_self, *args)
2721  try:
2722  self.this.append(this)
2723  except:
2724  self.this = this
2725 
2726  if self.__class__ != AssignmentContainer:
2727  _director_objects.register(self)
2728 
2729 
2730 
2731 
2732  def get_number_of_assignments(self):
2733  """get_number_of_assignments(AssignmentContainer self) -> unsigned int"""
2734  return _IMP_domino.AssignmentContainer_get_number_of_assignments(self)
2735 
2736 
2737  def get_assignment(self, i):
2738  """get_assignment(AssignmentContainer self, unsigned int i) -> Assignment"""
2739  return _IMP_domino.AssignmentContainer_get_assignment(self, i)
2740 
2741 
2742  def get_assignments(self, *args):
2743  """
2744  get_assignments(AssignmentContainer self, IMP::IntRange ir) -> IMP::domino::Assignments
2745  get_assignments(AssignmentContainer self) -> IMP::domino::Assignments
2746  """
2747  return _IMP_domino.AssignmentContainer_get_assignments(self, *args)
2748 
2749 
2750  def add_assignment(self, a):
2751  """add_assignment(AssignmentContainer self, Assignment a)"""
2752  return _IMP_domino.AssignmentContainer_add_assignment(self, a)
2753 
2754 
2755  def add_assignments(self, asgn):
2756  """add_assignments(AssignmentContainer self, IMP::domino::Assignments const & asgn)"""
2757  return _IMP_domino.AssignmentContainer_add_assignments(self, asgn)
2758 
2759 
2760  def get_particle_assignments(self, i):
2761  """get_particle_assignments(AssignmentContainer self, unsigned int i) -> IMP::Ints"""
2762  return _IMP_domino.AssignmentContainer_get_particle_assignments(self, i)
2763 
2764  __swig_destroy__ = _IMP_domino.delete_AssignmentContainer
2765  __del__ = lambda self: None
2766 
2767  def __str__(self):
2768  """__str__(AssignmentContainer self) -> std::string"""
2769  return _IMP_domino.AssignmentContainer___str__(self)
2770 
2771 
2772  def __repr__(self):
2773  """__repr__(AssignmentContainer self) -> std::string"""
2774  return _IMP_domino.AssignmentContainer___repr__(self)
2775 
2776 
2777  @staticmethod
2778  def get_from(o):
2779  return _object_cast_to_AssignmentContainer(o)
2780 
2781 
2782  def get_type_name(self):
2783  return self.__class__.__name__
2784  def do_show(self, out):
2785  pass
2786  def get_version_info(self):
2787  if"IMP::domino" == "IMP":
2788  return VersionInfo(self.__module__,
2789  __import__(self.__module__).get_module_version())
2790  else:
2791  return IMP.VersionInfo(self.__module__,
2792  __import__(self.__module__).get_module_version())
2793  @staticmethod
2794  def get_from(o):
2795  return _object_cast_to_AssignmentContainer(o)
2796 
2797  def __disown__(self):
2798  self.this.disown()
2799  _IMP_domino.disown_AssignmentContainer(self)
2800  return weakref_proxy(self)
2801 
2802  def do_destroy(self):
2803  """do_destroy(AssignmentContainer self)"""
2804  return _IMP_domino.AssignmentContainer_do_destroy(self)
2805 
2806 AssignmentContainer_swigregister = _IMP_domino.AssignmentContainer_swigregister
2807 AssignmentContainer_swigregister(AssignmentContainer)
2808 
2809 class PackedAssignmentContainer(AssignmentContainer):
2810  """Proxy of C++ IMP::domino::PackedAssignmentContainer class"""
2811  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2812 
2813  def __init__(self, *args):
2814  """
2815  __init__(IMP::domino::PackedAssignmentContainer self, std::string name) -> PackedAssignmentContainer
2816  __init__(IMP::domino::PackedAssignmentContainer self) -> PackedAssignmentContainer
2817  """
2818  this = _IMP_domino.new_PackedAssignmentContainer(*args)
2819  try:
2820  self.this.append(this)
2821  except:
2822  self.this = this
2823 
2824  def get_assignments(self, *args):
2825  """
2826  get_assignments(PackedAssignmentContainer self, IMP::IntRange r) -> IMP::domino::Assignments
2827  get_assignments(PackedAssignmentContainer self) -> IMP::domino::Assignments
2828  """
2829  return _IMP_domino.PackedAssignmentContainer_get_assignments(self, *args)
2830 
2831 
2832  def get_version_info(self):
2833  """get_version_info(PackedAssignmentContainer self) -> VersionInfo"""
2834  return _IMP_domino.PackedAssignmentContainer_get_version_info(self)
2835 
2836 
2837  def __str__(self):
2838  """__str__(PackedAssignmentContainer self) -> std::string"""
2839  return _IMP_domino.PackedAssignmentContainer___str__(self)
2840 
2841 
2842  def __repr__(self):
2843  """__repr__(PackedAssignmentContainer self) -> std::string"""
2844  return _IMP_domino.PackedAssignmentContainer___repr__(self)
2845 
2846 
2847  @staticmethod
2848  def get_from(o):
2849  return _object_cast_to_PackedAssignmentContainer(o)
2850 
2851 PackedAssignmentContainer_swigregister = _IMP_domino.PackedAssignmentContainer_swigregister
2852 PackedAssignmentContainer_swigregister(PackedAssignmentContainer)
2853 
2854 class ListAssignmentContainer(AssignmentContainer):
2855  """Proxy of C++ IMP::domino::ListAssignmentContainer class"""
2856  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2857 
2858  def __init__(self, *args):
2859  """
2860  __init__(IMP::domino::ListAssignmentContainer self, std::string name) -> ListAssignmentContainer
2861  __init__(IMP::domino::ListAssignmentContainer self) -> ListAssignmentContainer
2862  """
2863  this = _IMP_domino.new_ListAssignmentContainer(*args)
2864  try:
2865  self.this.append(this)
2866  except:
2867  self.this = this
2868 
2869  def get_assignments(self, *args):
2870  """
2871  get_assignments(ListAssignmentContainer self, IMP::IntRange r) -> IMP::domino::Assignments
2872  get_assignments(ListAssignmentContainer self) -> IMP::domino::Assignments
2873  """
2874  return _IMP_domino.ListAssignmentContainer_get_assignments(self, *args)
2875 
2876 
2877  def get_version_info(self):
2878  """get_version_info(ListAssignmentContainer self) -> VersionInfo"""
2879  return _IMP_domino.ListAssignmentContainer_get_version_info(self)
2880 
2881 
2882  def __str__(self):
2883  """__str__(ListAssignmentContainer self) -> std::string"""
2884  return _IMP_domino.ListAssignmentContainer___str__(self)
2885 
2886 
2887  def __repr__(self):
2888  """__repr__(ListAssignmentContainer self) -> std::string"""
2889  return _IMP_domino.ListAssignmentContainer___repr__(self)
2890 
2891 
2892  @staticmethod
2893  def get_from(o):
2894  return _object_cast_to_ListAssignmentContainer(o)
2895 
2896 ListAssignmentContainer_swigregister = _IMP_domino.ListAssignmentContainer_swigregister
2897 ListAssignmentContainer_swigregister(ListAssignmentContainer)
2898 
2899 class SampleAssignmentContainer(AssignmentContainer):
2900  """Proxy of C++ IMP::domino::SampleAssignmentContainer class"""
2901  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2902 
2903  def __init__(self, *args):
2904  """
2905  __init__(IMP::domino::SampleAssignmentContainer self, unsigned int k, std::string name) -> SampleAssignmentContainer
2906  __init__(IMP::domino::SampleAssignmentContainer self, unsigned int k) -> SampleAssignmentContainer
2907  """
2908  this = _IMP_domino.new_SampleAssignmentContainer(*args)
2909  try:
2910  self.this.append(this)
2911  except:
2912  self.this = this
2913 
2914  def get_assignments(self, *args):
2915  """
2916  get_assignments(SampleAssignmentContainer self, IMP::IntRange r) -> IMP::domino::Assignments
2917  get_assignments(SampleAssignmentContainer self) -> IMP::domino::Assignments
2918  """
2919  return _IMP_domino.SampleAssignmentContainer_get_assignments(self, *args)
2920 
2921 
2922  def get_version_info(self):
2923  """get_version_info(SampleAssignmentContainer self) -> VersionInfo"""
2924  return _IMP_domino.SampleAssignmentContainer_get_version_info(self)
2925 
2926 
2927  def __str__(self):
2928  """__str__(SampleAssignmentContainer self) -> std::string"""
2929  return _IMP_domino.SampleAssignmentContainer___str__(self)
2930 
2931 
2932  def __repr__(self):
2933  """__repr__(SampleAssignmentContainer self) -> std::string"""
2934  return _IMP_domino.SampleAssignmentContainer___repr__(self)
2935 
2936 
2937  @staticmethod
2938  def get_from(o):
2939  return _object_cast_to_SampleAssignmentContainer(o)
2940 
2941 SampleAssignmentContainer_swigregister = _IMP_domino.SampleAssignmentContainer_swigregister
2942 SampleAssignmentContainer_swigregister(SampleAssignmentContainer)
2943 
2944 class WriteHDF5AssignmentContainer(AssignmentContainer):
2945  """Proxy of C++ IMP::domino::WriteHDF5AssignmentContainer class"""
2946  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2947 
2948  def __init__(self, *args):
2949  """
2950  __init__(IMP::domino::WriteHDF5AssignmentContainer self, Group parent, Subset s, IMP::ParticlesTemp const & all_particles, std::string name) -> WriteHDF5AssignmentContainer
2951  __init__(IMP::domino::WriteHDF5AssignmentContainer self, IndexDataSet2D dataset, Subset s, IMP::ParticlesTemp const & all_particles, std::string name) -> WriteHDF5AssignmentContainer
2952  """
2953  this = _IMP_domino.new_WriteHDF5AssignmentContainer(*args)
2954  try:
2955  self.this.append(this)
2956  except:
2957  self.this = this
2958 
2959  def set_cache_size(self, words):
2960  """set_cache_size(WriteHDF5AssignmentContainer self, unsigned int words)"""
2961  return _IMP_domino.WriteHDF5AssignmentContainer_set_cache_size(self, words)
2962 
2963 
2964  def get_assignments(self, *args):
2965  """
2966  get_assignments(WriteHDF5AssignmentContainer self, IMP::IntRange r) -> IMP::domino::Assignments
2967  get_assignments(WriteHDF5AssignmentContainer self) -> IMP::domino::Assignments
2968  """
2969  return _IMP_domino.WriteHDF5AssignmentContainer_get_assignments(self, *args)
2970 
2971 
2972  def get_version_info(self):
2973  """get_version_info(WriteHDF5AssignmentContainer self) -> VersionInfo"""
2974  return _IMP_domino.WriteHDF5AssignmentContainer_get_version_info(self)
2975 
2976 
2977  def __str__(self):
2978  """__str__(WriteHDF5AssignmentContainer self) -> std::string"""
2979  return _IMP_domino.WriteHDF5AssignmentContainer___str__(self)
2980 
2981 
2982  def __repr__(self):
2983  """__repr__(WriteHDF5AssignmentContainer self) -> std::string"""
2984  return _IMP_domino.WriteHDF5AssignmentContainer___repr__(self)
2985 
2986 
2987  @staticmethod
2988  def get_from(o):
2989  return _object_cast_to_WriteHDF5AssignmentContainer(o)
2990 
2991 WriteHDF5AssignmentContainer_swigregister = _IMP_domino.WriteHDF5AssignmentContainer_swigregister
2992 WriteHDF5AssignmentContainer_swigregister(WriteHDF5AssignmentContainer)
2993 
2994 class ReadHDF5AssignmentContainer(AssignmentContainer):
2995  """Proxy of C++ IMP::domino::ReadHDF5AssignmentContainer class"""
2996  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2997 
2998  def __init__(self, dataset, s, all_particles, name):
2999  """__init__(IMP::domino::ReadHDF5AssignmentContainer self, IndexConstDataSet2D dataset, Subset s, IMP::ParticlesTemp const & all_particles, std::string name) -> ReadHDF5AssignmentContainer"""
3000  this = _IMP_domino.new_ReadHDF5AssignmentContainer(dataset, s, all_particles, name)
3001  try:
3002  self.this.append(this)
3003  except:
3004  self.this = this
3005 
3006  def set_cache_size(self, words):
3007  """set_cache_size(ReadHDF5AssignmentContainer self, unsigned int words)"""
3008  return _IMP_domino.ReadHDF5AssignmentContainer_set_cache_size(self, words)
3009 
3010 
3011  def get_assignments(self, *args):
3012  """
3013  get_assignments(ReadHDF5AssignmentContainer self, IMP::IntRange r) -> IMP::domino::Assignments
3014  get_assignments(ReadHDF5AssignmentContainer self) -> IMP::domino::Assignments
3015  """
3016  return _IMP_domino.ReadHDF5AssignmentContainer_get_assignments(self, *args)
3017 
3018 
3019  def get_version_info(self):
3020  """get_version_info(ReadHDF5AssignmentContainer self) -> VersionInfo"""
3021  return _IMP_domino.ReadHDF5AssignmentContainer_get_version_info(self)
3022 
3023 
3024  def __str__(self):
3025  """__str__(ReadHDF5AssignmentContainer self) -> std::string"""
3026  return _IMP_domino.ReadHDF5AssignmentContainer___str__(self)
3027 
3028 
3029  def __repr__(self):
3030  """__repr__(ReadHDF5AssignmentContainer self) -> std::string"""
3031  return _IMP_domino.ReadHDF5AssignmentContainer___repr__(self)
3032 
3033 
3034  @staticmethod
3035  def get_from(o):
3036  return _object_cast_to_ReadHDF5AssignmentContainer(o)
3037 
3038 ReadHDF5AssignmentContainer_swigregister = _IMP_domino.ReadHDF5AssignmentContainer_swigregister
3039 ReadHDF5AssignmentContainer_swigregister(ReadHDF5AssignmentContainer)
3040 
3041 class WriteAssignmentContainer(AssignmentContainer):
3042  """Proxy of C++ IMP::domino::WriteAssignmentContainer class"""
3043  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3044 
3045  def __init__(self, out_file, s, all_particles, name):
3046  """__init__(IMP::domino::WriteAssignmentContainer self, std::string out_file, Subset s, IMP::ParticlesTemp const & all_particles, std::string name) -> WriteAssignmentContainer"""
3047  this = _IMP_domino.new_WriteAssignmentContainer(out_file, s, all_particles, name)
3048  try:
3049  self.this.append(this)
3050  except:
3051  self.this = this
3052 
3053  def set_cache_size(self, words):
3054  """set_cache_size(WriteAssignmentContainer self, unsigned int words)"""
3055  return _IMP_domino.WriteAssignmentContainer_set_cache_size(self, words)
3056 
3057 
3058  def get_assignments(self, *args):
3059  """
3060  get_assignments(WriteAssignmentContainer self, IMP::IntRange r) -> IMP::domino::Assignments
3061  get_assignments(WriteAssignmentContainer self) -> IMP::domino::Assignments
3062  """
3063  return _IMP_domino.WriteAssignmentContainer_get_assignments(self, *args)
3064 
3065 
3066  def get_version_info(self):
3067  """get_version_info(WriteAssignmentContainer self) -> VersionInfo"""
3068  return _IMP_domino.WriteAssignmentContainer_get_version_info(self)
3069 
3070 
3071  def __str__(self):
3072  """__str__(WriteAssignmentContainer self) -> std::string"""
3073  return _IMP_domino.WriteAssignmentContainer___str__(self)
3074 
3075 
3076  def __repr__(self):
3077  """__repr__(WriteAssignmentContainer self) -> std::string"""
3078  return _IMP_domino.WriteAssignmentContainer___repr__(self)
3079 
3080 
3081  @staticmethod
3082  def get_from(o):
3083  return _object_cast_to_WriteAssignmentContainer(o)
3084 
3085 WriteAssignmentContainer_swigregister = _IMP_domino.WriteAssignmentContainer_swigregister
3086 WriteAssignmentContainer_swigregister(WriteAssignmentContainer)
3087 
3088 class ReadAssignmentContainer(AssignmentContainer):
3089  """Proxy of C++ IMP::domino::ReadAssignmentContainer class"""
3090  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3091 
3092  def __init__(self, out_file, s, all_particles, name):
3093  """__init__(IMP::domino::ReadAssignmentContainer self, std::string out_file, Subset s, IMP::ParticlesTemp const & all_particles, std::string name) -> ReadAssignmentContainer"""
3094  this = _IMP_domino.new_ReadAssignmentContainer(out_file, s, all_particles, name)
3095  try:
3096  self.this.append(this)
3097  except:
3098  self.this = this
3099 
3100  def set_cache_size(self, words):
3101  """set_cache_size(ReadAssignmentContainer self, unsigned int words)"""
3102  return _IMP_domino.ReadAssignmentContainer_set_cache_size(self, words)
3103 
3104 
3105  def get_assignments(self, *args):
3106  """
3107  get_assignments(ReadAssignmentContainer self, IMP::IntRange r) -> IMP::domino::Assignments
3108  get_assignments(ReadAssignmentContainer self) -> IMP::domino::Assignments
3109  """
3110  return _IMP_domino.ReadAssignmentContainer_get_assignments(self, *args)
3111 
3112 
3113  def get_version_info(self):
3114  """get_version_info(ReadAssignmentContainer self) -> VersionInfo"""
3115  return _IMP_domino.ReadAssignmentContainer_get_version_info(self)
3116 
3117 
3118  def __str__(self):
3119  """__str__(ReadAssignmentContainer self) -> std::string"""
3120  return _IMP_domino.ReadAssignmentContainer___str__(self)
3121 
3122 
3123  def __repr__(self):
3124  """__repr__(ReadAssignmentContainer self) -> std::string"""
3125  return _IMP_domino.ReadAssignmentContainer___repr__(self)
3126 
3127 
3128  @staticmethod
3129  def get_from(o):
3130  return _object_cast_to_ReadAssignmentContainer(o)
3131 
3132 ReadAssignmentContainer_swigregister = _IMP_domino.ReadAssignmentContainer_swigregister
3133 ReadAssignmentContainer_swigregister(ReadAssignmentContainer)
3134 
3135 class RangeViewAssignmentContainer(AssignmentContainer):
3136  """Proxy of C++ IMP::domino::RangeViewAssignmentContainer class"""
3137  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3138 
3139  def __init__(self, inner, begin, end):
3140  """__init__(IMP::domino::RangeViewAssignmentContainer self, AssignmentContainer inner, unsigned int begin, unsigned int end) -> RangeViewAssignmentContainer"""
3141  this = _IMP_domino.new_RangeViewAssignmentContainer(inner, begin, end)
3142  try:
3143  self.this.append(this)
3144  except:
3145  self.this = this
3146 
3147  def get_assignments(self, *args):
3148  """
3149  get_assignments(RangeViewAssignmentContainer self, IMP::IntRange r) -> IMP::domino::Assignments
3150  get_assignments(RangeViewAssignmentContainer self) -> IMP::domino::Assignments
3151  """
3152  return _IMP_domino.RangeViewAssignmentContainer_get_assignments(self, *args)
3153 
3154 
3155  def get_version_info(self):
3156  """get_version_info(RangeViewAssignmentContainer self) -> VersionInfo"""
3157  return _IMP_domino.RangeViewAssignmentContainer_get_version_info(self)
3158 
3159 
3160  def __str__(self):
3161  """__str__(RangeViewAssignmentContainer self) -> std::string"""
3162  return _IMP_domino.RangeViewAssignmentContainer___str__(self)
3163 
3164 
3165  def __repr__(self):
3166  """__repr__(RangeViewAssignmentContainer self) -> std::string"""
3167  return _IMP_domino.RangeViewAssignmentContainer___repr__(self)
3168 
3169 
3170  @staticmethod
3171  def get_from(o):
3172  return _object_cast_to_RangeViewAssignmentContainer(o)
3173 
3174 RangeViewAssignmentContainer_swigregister = _IMP_domino.RangeViewAssignmentContainer_swigregister
3175 RangeViewAssignmentContainer_swigregister(RangeViewAssignmentContainer)
3176 
3177 class HeapAssignmentContainer(AssignmentContainer):
3178  """Proxy of C++ IMP::domino::HeapAssignmentContainer class"""
3179  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3180 
3181  def __init__(self, *args):
3182  """
3183  __init__(IMP::domino::HeapAssignmentContainer self, Subset subset, unsigned int k, RestraintCache rssf, std::string name) -> HeapAssignmentContainer
3184  __init__(IMP::domino::HeapAssignmentContainer self, Subset subset, unsigned int k, RestraintCache rssf) -> HeapAssignmentContainer
3185  """
3186  this = _IMP_domino.new_HeapAssignmentContainer(*args)
3187  try:
3188  self.this.append(this)
3189  except:
3190  self.this = this
3191 
3192  def get_assignments(self, *args):
3193  """
3194  get_assignments(HeapAssignmentContainer self, IMP::IntRange r) -> IMP::domino::Assignments
3195  get_assignments(HeapAssignmentContainer self) -> IMP::domino::Assignments
3196  """
3197  return _IMP_domino.HeapAssignmentContainer_get_assignments(self, *args)
3198 
3199 
3200  def get_version_info(self):
3201  """get_version_info(HeapAssignmentContainer self) -> VersionInfo"""
3202  return _IMP_domino.HeapAssignmentContainer_get_version_info(self)
3203 
3204 
3205  def __str__(self):
3206  """__str__(HeapAssignmentContainer self) -> std::string"""
3207  return _IMP_domino.HeapAssignmentContainer___str__(self)
3208 
3209 
3210  def __repr__(self):
3211  """__repr__(HeapAssignmentContainer self) -> std::string"""
3212  return _IMP_domino.HeapAssignmentContainer___repr__(self)
3213 
3214 
3215  @staticmethod
3216  def get_from(o):
3217  return _object_cast_to_HeapAssignmentContainer(o)
3218 
3219 HeapAssignmentContainer_swigregister = _IMP_domino.HeapAssignmentContainer_swigregister
3220 HeapAssignmentContainer_swigregister(HeapAssignmentContainer)
3221 
3222 class CappedAssignmentContainer(AssignmentContainer):
3223  """Proxy of C++ IMP::domino::CappedAssignmentContainer class"""
3224  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3225 
3226  def __init__(self, contained, max_states, name):
3227  """__init__(IMP::domino::CappedAssignmentContainer self, AssignmentContainer contained, int max_states, std::string name) -> CappedAssignmentContainer"""
3228  this = _IMP_domino.new_CappedAssignmentContainer(contained, max_states, name)
3229  try:
3230  self.this.append(this)
3231  except:
3232  self.this = this
3233 
3234  def get_assignments(self, *args):
3235  """
3236  get_assignments(CappedAssignmentContainer self, IMP::IntRange r) -> IMP::domino::Assignments
3237  get_assignments(CappedAssignmentContainer self) -> IMP::domino::Assignments
3238  """
3239  return _IMP_domino.CappedAssignmentContainer_get_assignments(self, *args)
3240 
3241 
3242  def get_version_info(self):
3243  """get_version_info(CappedAssignmentContainer self) -> VersionInfo"""
3244  return _IMP_domino.CappedAssignmentContainer_get_version_info(self)
3245 
3246 
3247  def __str__(self):
3248  """__str__(CappedAssignmentContainer self) -> std::string"""
3249  return _IMP_domino.CappedAssignmentContainer___str__(self)
3250 
3251 
3252  def __repr__(self):
3253  """__repr__(CappedAssignmentContainer self) -> std::string"""
3254  return _IMP_domino.CappedAssignmentContainer___repr__(self)
3255 
3256 
3257  @staticmethod
3258  def get_from(o):
3259  return _object_cast_to_CappedAssignmentContainer(o)
3260 
3261 CappedAssignmentContainer_swigregister = _IMP_domino.CappedAssignmentContainer_swigregister
3262 CappedAssignmentContainer_swigregister(CappedAssignmentContainer)
3263 
3264 class AssignmentsTable(IMP.Object):
3265  """Proxy of C++ IMP::domino::AssignmentsTable class"""
3266  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3267 
3268  def __init__(self, *args):
3269  """
3270  __init__(IMP::domino::AssignmentsTable self, std::string name) -> AssignmentsTable
3271  __init__(IMP::domino::AssignmentsTable self) -> AssignmentsTable
3272  """
3273  if self.__class__ == AssignmentsTable:
3274  _self = None
3275  else:
3276  _self = self
3277  this = _IMP_domino.new_AssignmentsTable(_self, *args)
3278  try:
3279  self.this.append(this)
3280  except:
3281  self.this = this
3282 
3283  if self.__class__ != AssignmentsTable:
3284  _director_objects.register(self)
3285 
3286 
3287 
3288 
3289  def load_assignments(self, s, ac):
3290  """load_assignments(AssignmentsTable self, Subset s, AssignmentContainer ac)"""
3291  return _IMP_domino.AssignmentsTable_load_assignments(self, s, ac)
3292 
3293  __swig_destroy__ = _IMP_domino.delete_AssignmentsTable
3294  __del__ = lambda self: None
3295 
3296  def __str__(self):
3297  """__str__(AssignmentsTable self) -> std::string"""
3298  return _IMP_domino.AssignmentsTable___str__(self)
3299 
3300 
3301  def __repr__(self):
3302  """__repr__(AssignmentsTable self) -> std::string"""
3303  return _IMP_domino.AssignmentsTable___repr__(self)
3304 
3305 
3306  @staticmethod
3307  def get_from(o):
3308  return _object_cast_to_AssignmentsTable(o)
3309 
3310 
3311  def get_type_name(self):
3312  return self.__class__.__name__
3313  def do_show(self, out):
3314  pass
3315  def get_version_info(self):
3316  if"IMP::domino" == "IMP":
3317  return VersionInfo(self.__module__,
3318  __import__(self.__module__).get_module_version())
3319  else:
3320  return IMP.VersionInfo(self.__module__,
3321  __import__(self.__module__).get_module_version())
3322  @staticmethod
3323  def get_from(o):
3324  return _object_cast_to_AssignmentsTable(o)
3325 
3326  def __disown__(self):
3327  self.this.disown()
3328  _IMP_domino.disown_AssignmentsTable(self)
3329  return weakref_proxy(self)
3330 
3331  def do_destroy(self):
3332  """do_destroy(AssignmentsTable self)"""
3333  return _IMP_domino.AssignmentsTable_do_destroy(self)
3334 
3335 AssignmentsTable_swigregister = _IMP_domino.AssignmentsTable_swigregister
3336 AssignmentsTable_swigregister(AssignmentsTable)
3337 
3338 class SimpleAssignmentsTable(AssignmentsTable):
3339  """Proxy of C++ IMP::domino::SimpleAssignmentsTable class"""
3340  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3341 
3342  def __init__(self, *args):
3343  """
3344  __init__(IMP::domino::SimpleAssignmentsTable self, ParticleStatesTable pst, IMP::domino::SubsetFilterTables const & sft, unsigned int max) -> SimpleAssignmentsTable
3345  __init__(IMP::domino::SimpleAssignmentsTable self, ParticleStatesTable pst, IMP::domino::SubsetFilterTables const & sft) -> SimpleAssignmentsTable
3346  __init__(IMP::domino::SimpleAssignmentsTable self, ParticleStatesTable pst) -> SimpleAssignmentsTable
3347  """
3348  this = _IMP_domino.new_SimpleAssignmentsTable(*args)
3349  try:
3350  self.this.append(this)
3351  except:
3352  self.this = this
3353 
3354  def get_version_info(self):
3355  """get_version_info(SimpleAssignmentsTable self) -> VersionInfo"""
3356  return _IMP_domino.SimpleAssignmentsTable_get_version_info(self)
3357 
3358 
3359  def __str__(self):
3360  """__str__(SimpleAssignmentsTable self) -> std::string"""
3361  return _IMP_domino.SimpleAssignmentsTable___str__(self)
3362 
3363 
3364  def __repr__(self):
3365  """__repr__(SimpleAssignmentsTable self) -> std::string"""
3366  return _IMP_domino.SimpleAssignmentsTable___repr__(self)
3367 
3368 
3369  @staticmethod
3370  def get_from(o):
3371  return _object_cast_to_SimpleAssignmentsTable(o)
3372 
3373 SimpleAssignmentsTable_swigregister = _IMP_domino.SimpleAssignmentsTable_swigregister
3374 SimpleAssignmentsTable_swigregister(SimpleAssignmentsTable)
3375 
3376 class RecursiveAssignmentsTable(AssignmentsTable):
3377  """Proxy of C++ IMP::domino::RecursiveAssignmentsTable class"""
3378  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3379 
3380  def __init__(self, *args):
3381  """
3382  __init__(IMP::domino::RecursiveAssignmentsTable self, ParticleStatesTable pst, IMP::domino::SubsetFilterTables const & sft, unsigned int max) -> RecursiveAssignmentsTable
3383  __init__(IMP::domino::RecursiveAssignmentsTable self, ParticleStatesTable pst, IMP::domino::SubsetFilterTables const & sft) -> RecursiveAssignmentsTable
3384  __init__(IMP::domino::RecursiveAssignmentsTable self, ParticleStatesTable pst) -> RecursiveAssignmentsTable
3385  """
3386  this = _IMP_domino.new_RecursiveAssignmentsTable(*args)
3387  try:
3388  self.this.append(this)
3389  except:
3390  self.this = this
3391 
3392  def get_version_info(self):
3393  """get_version_info(RecursiveAssignmentsTable self) -> VersionInfo"""
3394  return _IMP_domino.RecursiveAssignmentsTable_get_version_info(self)
3395 
3396 
3397  def __str__(self):
3398  """__str__(RecursiveAssignmentsTable self) -> std::string"""
3399  return _IMP_domino.RecursiveAssignmentsTable___str__(self)
3400 
3401 
3402  def __repr__(self):
3403  """__repr__(RecursiveAssignmentsTable self) -> std::string"""
3404  return _IMP_domino.RecursiveAssignmentsTable___repr__(self)
3405 
3406 
3407  @staticmethod
3408  def get_from(o):
3409  return _object_cast_to_RecursiveAssignmentsTable(o)
3410 
3411 RecursiveAssignmentsTable_swigregister = _IMP_domino.RecursiveAssignmentsTable_swigregister
3412 RecursiveAssignmentsTable_swigregister(RecursiveAssignmentsTable)
3413 
3414 class BranchAndBoundAssignmentsTable(AssignmentsTable):
3415  """Proxy of C++ IMP::domino::BranchAndBoundAssignmentsTable class"""
3416  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3417 
3418  def __init__(self, *args):
3419  """
3420  __init__(IMP::domino::BranchAndBoundAssignmentsTable self, ParticleStatesTable pst, IMP::domino::SubsetFilterTables const & sft, unsigned int max) -> BranchAndBoundAssignmentsTable
3421  __init__(IMP::domino::BranchAndBoundAssignmentsTable self, ParticleStatesTable pst, IMP::domino::SubsetFilterTables const & sft) -> BranchAndBoundAssignmentsTable
3422  __init__(IMP::domino::BranchAndBoundAssignmentsTable self, ParticleStatesTable pst) -> BranchAndBoundAssignmentsTable
3423  """
3424  this = _IMP_domino.new_BranchAndBoundAssignmentsTable(*args)
3425  try:
3426  self.this.append(this)
3427  except:
3428  self.this = this
3429 
3430  def get_version_info(self):
3431  """get_version_info(BranchAndBoundAssignmentsTable self) -> VersionInfo"""
3432  return _IMP_domino.BranchAndBoundAssignmentsTable_get_version_info(self)
3433 
3434 
3435  def __str__(self):
3436  """__str__(BranchAndBoundAssignmentsTable self) -> std::string"""
3437  return _IMP_domino.BranchAndBoundAssignmentsTable___str__(self)
3438 
3439 
3440  def __repr__(self):
3441  """__repr__(BranchAndBoundAssignmentsTable self) -> std::string"""
3442  return _IMP_domino.BranchAndBoundAssignmentsTable___repr__(self)
3443 
3444 
3445  @staticmethod
3446  def get_from(o):
3447  return _object_cast_to_BranchAndBoundAssignmentsTable(o)
3448 
3449 BranchAndBoundAssignmentsTable_swigregister = _IMP_domino.BranchAndBoundAssignmentsTable_swigregister
3450 BranchAndBoundAssignmentsTable_swigregister(BranchAndBoundAssignmentsTable)
3451 
3452 class ListAssignmentsTable(AssignmentsTable):
3453  """Proxy of C++ IMP::domino::ListAssignmentsTable class"""
3454  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3455 
3456  def __init__(self, *args):
3457  """
3458  __init__(IMP::domino::ListAssignmentsTable self, std::string name) -> ListAssignmentsTable
3459  __init__(IMP::domino::ListAssignmentsTable self) -> ListAssignmentsTable
3460  """
3461  this = _IMP_domino.new_ListAssignmentsTable(*args)
3462  try:
3463  self.this.append(this)
3464  except:
3465  self.this = this
3466 
3467  def set_assignments(self, s, lsc):
3468  """set_assignments(ListAssignmentsTable self, Subset s, AssignmentContainer lsc)"""
3469  return _IMP_domino.ListAssignmentsTable_set_assignments(self, s, lsc)
3470 
3471 
3472  def get_version_info(self):
3473  """get_version_info(ListAssignmentsTable self) -> VersionInfo"""
3474  return _IMP_domino.ListAssignmentsTable_get_version_info(self)
3475 
3476 
3477  def __str__(self):
3478  """__str__(ListAssignmentsTable self) -> std::string"""
3479  return _IMP_domino.ListAssignmentsTable___str__(self)
3480 
3481 
3482  def __repr__(self):
3483  """__repr__(ListAssignmentsTable self) -> std::string"""
3484  return _IMP_domino.ListAssignmentsTable___repr__(self)
3485 
3486 
3487  @staticmethod
3488  def get_from(o):
3489  return _object_cast_to_ListAssignmentsTable(o)
3490 
3491 ListAssignmentsTable_swigregister = _IMP_domino.ListAssignmentsTable_swigregister
3492 ListAssignmentsTable_swigregister(ListAssignmentsTable)
3493 
3494 
3495 def get_order(s, sft):
3496  """get_order(Subset s, IMP::domino::SubsetFilterTables const & sft) -> IMP::ParticlesTemp"""
3497  return _IMP_domino.get_order(s, sft)
3498 class _SubsetGraphVertexIndex(object):
3499  """Proxy of C++ IMP::domino::SubsetGraphVertexIndex class"""
3500  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3501  __repr__ = _swig_repr
3502 
3503  def __init__(self):
3504  """__init__(IMP::domino::SubsetGraphVertexIndex self) -> _SubsetGraphVertexIndex"""
3505  this = _IMP_domino.new__SubsetGraphVertexIndex()
3506  try:
3507  self.this.append(this)
3508  except:
3509  self.this = this
3510  __swig_destroy__ = _IMP_domino.delete__SubsetGraphVertexIndex
3511  __del__ = lambda self: None
3512 _SubsetGraphVertexIndex_swigregister = _IMP_domino._SubsetGraphVertexIndex_swigregister
3513 _SubsetGraphVertexIndex_swigregister(_SubsetGraphVertexIndex)
3514 
3515 class _InteractionGraphVertexIndex(object):
3516  """Proxy of C++ IMP::domino::InteractionGraphVertexIndex class"""
3517  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3518  __repr__ = _swig_repr
3519 
3520  def __init__(self):
3521  """__init__(IMP::domino::InteractionGraphVertexIndex self) -> _InteractionGraphVertexIndex"""
3522  this = _IMP_domino.new__InteractionGraphVertexIndex()
3523  try:
3524  self.this.append(this)
3525  except:
3526  self.this = this
3527  __swig_destroy__ = _IMP_domino.delete__InteractionGraphVertexIndex
3528  __del__ = lambda self: None
3529 _InteractionGraphVertexIndex_swigregister = _IMP_domino._InteractionGraphVertexIndex_swigregister
3530 _InteractionGraphVertexIndex_swigregister(_InteractionGraphVertexIndex)
3531 
3532 
3533 def get_subsets(g):
3534  """get_subsets(IMP::domino::SubsetGraph const & g) -> IMP::domino::Subsets"""
3535  return _IMP_domino.get_subsets(g)
3536 
3537 def get_junction_tree(ig):
3538  """get_junction_tree(IMP::domino::InteractionGraph const & ig) -> IMP::domino::SubsetGraph"""
3539  return _IMP_domino.get_junction_tree(ig)
3540 
3541 def get_triangulated(input):
3542  """get_triangulated(IMP::domino::InteractionGraph const & input) -> IMP::domino::InteractionGraph"""
3543  return _IMP_domino.get_triangulated(input)
3544 class _CliqueGraphVertexIndex(object):
3545  """Proxy of C++ IMP::domino::CliqueGraphVertexIndex class"""
3546  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3547  __repr__ = _swig_repr
3548 
3549  def __init__(self):
3550  """__init__(IMP::domino::CliqueGraphVertexIndex self) -> _CliqueGraphVertexIndex"""
3551  this = _IMP_domino.new__CliqueGraphVertexIndex()
3552  try:
3553  self.this.append(this)
3554  except:
3555  self.this = this
3556  __swig_destroy__ = _IMP_domino.delete__CliqueGraphVertexIndex
3557  __del__ = lambda self: None
3558 _CliqueGraphVertexIndex_swigregister = _IMP_domino._CliqueGraphVertexIndex_swigregister
3559 _CliqueGraphVertexIndex_swigregister(_CliqueGraphVertexIndex)
3560 
3561 
3562 def get_clique_graph(input):
3563  """get_clique_graph(IMP::domino::InteractionGraph const & input) -> IMP::domino::CliqueGraph"""
3564  return _IMP_domino.get_clique_graph(input)
3565 
3566 def get_minimum_spanning_tree(input):
3567  """get_minimum_spanning_tree(IMP::domino::CliqueGraph const & input) -> IMP::domino::SubsetGraph"""
3568  return _IMP_domino.get_minimum_spanning_tree(input)
3569 
3570 def get_restraint_graph(rs, pst):
3571  """get_restraint_graph(_ScoringFunctionAdaptor rs, ParticleStatesTable pst) -> IMP::domino::SubsetGraph"""
3572  return _IMP_domino.get_restraint_graph(rs, pst)
3573 
3574 def get_interaction_graph(*args):
3575  """
3576  get_interaction_graph(_ScoringFunctionAdaptor rs, ParticleStatesTable pst) -> IMP::domino::InteractionGraph
3577  get_interaction_graph(_ScoringFunctionAdaptor rs, IMP::ParticlesTemp const & pst) -> IMP::domino::InteractionGraph
3578  """
3579  return _IMP_domino.get_interaction_graph(*args)
3580 
3582  """get_interaction_graph_geometry(IMP::domino::InteractionGraph const & ig) -> IMP::display::Geometries"""
3583  return _IMP_domino.get_interaction_graph_geometry(ig)
3584 
3586  """get_subset_graph_geometry(IMP::domino::SubsetGraph const & ig) -> IMP::display::Geometries"""
3587  return _IMP_domino.get_subset_graph_geometry(ig)
3588 class _MergeTreeVertexIndex(object):
3589  """Proxy of C++ IMP::domino::MergeTreeVertexIndex class"""
3590  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3591  __repr__ = _swig_repr
3592 
3593  def __init__(self):
3594  """__init__(IMP::domino::MergeTreeVertexIndex self) -> _MergeTreeVertexIndex"""
3595  this = _IMP_domino.new__MergeTreeVertexIndex()
3596  try:
3597  self.this.append(this)
3598  except:
3599  self.this = this
3600  __swig_destroy__ = _IMP_domino.delete__MergeTreeVertexIndex
3601  __del__ = lambda self: None
3602 _MergeTreeVertexIndex_swigregister = _IMP_domino._MergeTreeVertexIndex_swigregister
3603 _MergeTreeVertexIndex_swigregister(_MergeTreeVertexIndex)
3604 
3605 
3606 def show_as_graphviz(*args):
3607  """
3608  show_as_graphviz(IMP::domino::SubsetGraph const & name, TextOutput out)
3609  show_as_graphviz(IMP::domino::InteractionGraph const & name, TextOutput out)
3610  show_as_graphviz(IMP::domino::CliqueGraph const & name, TextOutput out)
3611  show_as_graphviz(IMP::domino::MergeTree const & name, TextOutput out)
3612  """
3613  return _IMP_domino.show_as_graphviz(*args)
3614 
3615 def get_vertex_index(*args):
3616  """
3617  get_vertex_index(IMP::domino::SubsetGraph const & g) -> _SubsetGraphVertexIndex
3618  get_vertex_index(IMP::domino::InteractionGraph const & g) -> _InteractionGraphVertexIndex
3619  get_vertex_index(IMP::domino::CliqueGraph const & g) -> _CliqueGraphVertexIndex
3620  get_vertex_index(IMP::domino::MergeTree const & g) -> _MergeTreeVertexIndex
3621  """
3622  return _IMP_domino.get_vertex_index(*args)
3623 
3624 def get_merge_tree(*args):
3625  """
3626  get_merge_tree(_ScoringFunctionAdaptor input, ParticleStatesTable pst) -> IMP::domino::MergeTree
3627  get_merge_tree(IMP::domino::SubsetGraph const & junction_tree) -> IMP::domino::MergeTree
3628  """
3629  return _IMP_domino.get_merge_tree(*args)
3630 
3631 def get_balanced_merge_tree(junction_tree):
3632  """get_balanced_merge_tree(IMP::domino::SubsetGraph const & junction_tree) -> IMP::domino::MergeTree"""
3633  return _IMP_domino.get_balanced_merge_tree(junction_tree)
3634 
3635 def get_is_merge_tree(tree, all, verbose=True):
3636  """
3637  get_is_merge_tree(IMP::domino::MergeTree const & tree, Subset all, bool verbose=True) -> bool
3638  get_is_merge_tree(IMP::domino::MergeTree const & tree, Subset all) -> bool
3639  """
3640  return _IMP_domino.get_is_merge_tree(tree, all, verbose)
3641 
3642 def write_merge_tree(tree, ps, out):
3643  """write_merge_tree(IMP::domino::MergeTree const & tree, IMP::ParticlesTemp const & ps, _ostream out)"""
3644  return _IMP_domino.write_merge_tree(tree, ps, out)
3645 
3646 def read_merge_tree(input, ps):
3647  """read_merge_tree(std::istream & input, IMP::ParticlesTemp const & ps) -> IMP::domino::MergeTree"""
3648  return _IMP_domino.read_merge_tree(input, ps)
3649 class DiscreteSampler(IMP.Sampler):
3650  """Proxy of C++ IMP::domino::DiscreteSampler class"""
3651  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3652 
3653  def get_subset_filter_tables_to_use(self, rs, pst):
3654  """get_subset_filter_tables_to_use(DiscreteSampler self, IMP::RestraintsTemp const & rs, ParticleStatesTable pst) -> IMP::domino::SubsetFilterTables"""
3655  return _IMP_domino.DiscreteSampler_get_subset_filter_tables_to_use(self, rs, pst)
3656 
3657 
3658  def get_assignments_table_to_use(self, *args):
3659  """
3660  get_assignments_table_to_use(DiscreteSampler self, IMP::domino::SubsetFilterTables const & sfts, unsigned int max) -> AssignmentsTable
3661  get_assignments_table_to_use(DiscreteSampler self, IMP::domino::SubsetFilterTables const & sfts) -> AssignmentsTable
3662  """
3663  return _IMP_domino.DiscreteSampler_get_assignments_table_to_use(self, *args)
3664 
3665 
3666  def do_sample(self):
3667  """do_sample(DiscreteSampler self) -> ConfigurationSet"""
3668  return _IMP_domino.DiscreteSampler_do_sample(self)
3669 
3670 
3671  def do_get_sample_assignments(self, all):
3672  """do_get_sample_assignments(DiscreteSampler self, Subset all) -> IMP::domino::Assignments"""
3673  return _IMP_domino.DiscreteSampler_do_get_sample_assignments(self, all)
3674 
3675 
3676  def get_restraints(self):
3677  """get_restraints(DiscreteSampler self) -> IMP::RestraintsTemp"""
3678  return _IMP_domino.DiscreteSampler_get_restraints(self)
3679 
3680 
3681  def __init__(self, m, pst, name):
3682  """__init__(IMP::domino::DiscreteSampler self, Model m, ParticleStatesTable pst, std::string name) -> DiscreteSampler"""
3683  if self.__class__ == DiscreteSampler:
3684  _self = None
3685  else:
3686  _self = self
3687  this = _IMP_domino.new_DiscreteSampler(_self, m, pst, name)
3688  try:
3689  self.this.append(this)
3690  except:
3691  self.this = this
3692 
3693  if self.__class__ != DiscreteSampler:
3694  _director_objects.register(self)
3695 
3696 
3697 
3698  __swig_destroy__ = _IMP_domino.delete_DiscreteSampler
3699  __del__ = lambda self: None
3700 
3701  def set_restraints(self, rs):
3702  """set_restraints(DiscreteSampler self, _RestraintsAdaptor rs)"""
3703  return _IMP_domino.DiscreteSampler_set_restraints(self, rs)
3704 
3705 
3706  def set_particle_states(self, p, se):
3707  """set_particle_states(DiscreteSampler self, Particle p, ParticleStates se)"""
3708  return _IMP_domino.DiscreteSampler_set_particle_states(self, p, se)
3709 
3710 
3711  def get_sample_assignments(self, s):
3712  """get_sample_assignments(DiscreteSampler self, Subset s) -> IMP::domino::Assignments"""
3713  return _IMP_domino.DiscreteSampler_get_sample_assignments(self, s)
3714 
3715 
3716  def set_particle_states_table(self, cse):
3717  """set_particle_states_table(DiscreteSampler self, ParticleStatesTable cse)"""
3718  return _IMP_domino.DiscreteSampler_set_particle_states_table(self, cse)
3719 
3720 
3721  def set_assignments_table(self, sst):
3722  """set_assignments_table(DiscreteSampler self, AssignmentsTable sst)"""
3723  return _IMP_domino.DiscreteSampler_set_assignments_table(self, sst)
3724 
3725 
3726  def get_particle_states_table(self):
3727  """get_particle_states_table(DiscreteSampler self) -> ParticleStatesTable"""
3728  return _IMP_domino.DiscreteSampler_get_particle_states_table(self)
3729 
3730 
3731  def remove_subset_filter_table(self, d):
3732  """remove_subset_filter_table(DiscreteSampler self, SubsetFilterTable d)"""
3733  return _IMP_domino.DiscreteSampler_remove_subset_filter_table(self, d)
3734 
3735 
3736  def remove_subset_filter_tables(self, d):
3737  """remove_subset_filter_tables(DiscreteSampler self, IMP::domino::SubsetFilterTables const & d)"""
3738  return _IMP_domino.DiscreteSampler_remove_subset_filter_tables(self, d)
3739 
3740 
3741  def set_subset_filter_tables(self, ps):
3742  """set_subset_filter_tables(DiscreteSampler self, IMP::domino::SubsetFilterTables const & ps)"""
3743  return _IMP_domino.DiscreteSampler_set_subset_filter_tables(self, ps)
3744 
3745 
3746  def set_subset_filter_tables_order(self, objs):
3747  """set_subset_filter_tables_order(DiscreteSampler self, IMP::domino::SubsetFilterTables const & objs)"""
3748  return _IMP_domino.DiscreteSampler_set_subset_filter_tables_order(self, objs)
3749 
3750 
3751  def add_subset_filter_table(self, obj):
3752  """add_subset_filter_table(DiscreteSampler self, SubsetFilterTable obj) -> unsigned int"""
3753  return _IMP_domino.DiscreteSampler_add_subset_filter_table(self, obj)
3754 
3755 
3756  def add_subset_filter_tables(self, objs):
3757  """add_subset_filter_tables(DiscreteSampler self, IMP::domino::SubsetFilterTables const & objs)"""
3758  return _IMP_domino.DiscreteSampler_add_subset_filter_tables(self, objs)
3759 
3760 
3761  def clear_subset_filter_tables(self):
3762  """clear_subset_filter_tables(DiscreteSampler self)"""
3763  return _IMP_domino.DiscreteSampler_clear_subset_filter_tables(self)
3764 
3765 
3766  def get_number_of_subset_filter_tables(self):
3767  """get_number_of_subset_filter_tables(DiscreteSampler self) -> unsigned int"""
3768  return _IMP_domino.DiscreteSampler_get_number_of_subset_filter_tables(self)
3769 
3770 
3771  def get_has_subset_filter_tables(self):
3772  """get_has_subset_filter_tables(DiscreteSampler self) -> bool"""
3773  return _IMP_domino.DiscreteSampler_get_has_subset_filter_tables(self)
3774 
3775 
3776  def get_subset_filter_table(self, i):
3777  """get_subset_filter_table(DiscreteSampler self, unsigned int i) -> SubsetFilterTable"""
3778  return _IMP_domino.DiscreteSampler_get_subset_filter_table(self, i)
3779 
3780 
3781  def get_subset_filter_tables(self):
3782  """get_subset_filter_tables(DiscreteSampler self) -> IMP::domino::SubsetFilterTables"""
3783  return _IMP_domino.DiscreteSampler_get_subset_filter_tables(self)
3784 
3785 
3786  def reserve_subset_filter_tables(self, sz):
3787  """reserve_subset_filter_tables(DiscreteSampler self, unsigned int sz)"""
3788  return _IMP_domino.DiscreteSampler_reserve_subset_filter_tables(self, sz)
3789 
3790 
3791  def set_maximum_number_of_assignments(self, mx):
3792  """set_maximum_number_of_assignments(DiscreteSampler self, unsigned int mx)"""
3793  return _IMP_domino.DiscreteSampler_set_maximum_number_of_assignments(self, mx)
3794 
3795 
3796  def get_maximum_number_of_assignments(self):
3797  """get_maximum_number_of_assignments(DiscreteSampler self) -> unsigned int"""
3798  return _IMP_domino.DiscreteSampler_get_maximum_number_of_assignments(self)
3799 
3800 
3801  def __str__(self):
3802  """__str__(DiscreteSampler self) -> std::string"""
3803  return _IMP_domino.DiscreteSampler___str__(self)
3804 
3805 
3806  def __repr__(self):
3807  """__repr__(DiscreteSampler self) -> std::string"""
3808  return _IMP_domino.DiscreteSampler___repr__(self)
3809 
3810 
3811  @staticmethod
3812  def get_from(o):
3813  return _object_cast_to_DiscreteSampler(o)
3814 
3815 
3816  def get_type_name(self):
3817  return self.__class__.__name__
3818  def do_show(self, out):
3819  pass
3820  def get_version_info(self):
3821  if"IMP::domino" == "IMP":
3822  return VersionInfo(self.__module__,
3823  __import__(self.__module__).get_module_version())
3824  else:
3825  return IMP.VersionInfo(self.__module__,
3826  __import__(self.__module__).get_module_version())
3827  @staticmethod
3828  def get_from(o):
3829  return _object_cast_to_DiscreteSampler(o)
3830 
3831  def __disown__(self):
3832  self.this.disown()
3833  _IMP_domino.disown_DiscreteSampler(self)
3834  return weakref_proxy(self)
3835 
3836  def do_destroy(self):
3837  """do_destroy(DiscreteSampler self)"""
3838  return _IMP_domino.DiscreteSampler_do_destroy(self)
3839 
3840 DiscreteSampler_swigregister = _IMP_domino.DiscreteSampler_swigregister
3841 DiscreteSampler_swigregister(DiscreteSampler)
3842 
3843 class DominoSampler(DiscreteSampler):
3844  """Proxy of C++ IMP::domino::DominoSampler class"""
3845  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3846 
3847  def __init__(self, *args):
3848  """
3849  __init__(IMP::domino::DominoSampler self, Model m, std::string name) -> DominoSampler
3850  __init__(IMP::domino::DominoSampler self, Model m) -> DominoSampler
3851  __init__(IMP::domino::DominoSampler self, Model m, ParticleStatesTable pst, std::string name) -> DominoSampler
3852  __init__(IMP::domino::DominoSampler self, Model m, ParticleStatesTable pst) -> DominoSampler
3853  """
3854  this = _IMP_domino.new_DominoSampler(*args)
3855  try:
3856  self.this.append(this)
3857  except:
3858  self.this = this
3859 
3860  def do_get_sample_assignments(self, known):
3861  """do_get_sample_assignments(DominoSampler self, Subset known) -> IMP::domino::Assignments"""
3862  return _IMP_domino.DominoSampler_do_get_sample_assignments(self, known)
3863 
3864 
3865  def get_version_info(self):
3866  """get_version_info(DominoSampler self) -> VersionInfo"""
3867  return _IMP_domino.DominoSampler_get_version_info(self)
3868 
3869 
3870  def set_merge_tree(self, mt):
3871  """set_merge_tree(DominoSampler self, IMP::domino::MergeTree const & mt)"""
3872  return _IMP_domino.DominoSampler_set_merge_tree(self, mt)
3873 
3874 
3875  def set_use_cross_subset_filtering(self, tf):
3876  """set_use_cross_subset_filtering(DominoSampler self, bool tf)"""
3877  return _IMP_domino.DominoSampler_set_use_cross_subset_filtering(self, tf)
3878 
3879 
3880  def get_number_of_assignments_for_vertex(self, tree_vertex):
3881  """get_number_of_assignments_for_vertex(DominoSampler self, unsigned int tree_vertex) -> unsigned int"""
3882  return _IMP_domino.DominoSampler_get_number_of_assignments_for_vertex(self, tree_vertex)
3883 
3884 
3885  def get_sample_assignments_for_vertex(self, tree_vertex):
3886  """get_sample_assignments_for_vertex(DominoSampler self, unsigned int tree_vertex) -> IMP::domino::Assignments"""
3887  return _IMP_domino.DominoSampler_get_sample_assignments_for_vertex(self, tree_vertex)
3888 
3889 
3890  def get_vertex_assignments(self, *args):
3891  """
3892  get_vertex_assignments(DominoSampler self, unsigned int node_index, unsigned int max_states) -> IMP::domino::Assignments
3893  get_vertex_assignments(DominoSampler self, unsigned int node_index) -> IMP::domino::Assignments
3894  get_vertex_assignments(DominoSampler self, unsigned int node_index, IMP::domino::Assignments const & first, IMP::domino::Assignments const & second, unsigned int max_states) -> IMP::domino::Assignments
3895  get_vertex_assignments(DominoSampler self, unsigned int node_index, IMP::domino::Assignments const & first, IMP::domino::Assignments const & second) -> IMP::domino::Assignments
3896  """
3897  return _IMP_domino.DominoSampler_get_vertex_assignments(self, *args)
3898 
3899 
3900  def load_vertex_assignments(self, *args):
3901  """
3902  load_vertex_assignments(DominoSampler self, unsigned int node_index, AssignmentContainer ac, unsigned int max_states)
3903  load_vertex_assignments(DominoSampler self, unsigned int node_index, AssignmentContainer ac)
3904  load_vertex_assignments(DominoSampler self, unsigned int node_index, AssignmentContainer first, AssignmentContainer second, AssignmentContainer ac, unsigned int max_states)
3905  load_vertex_assignments(DominoSampler self, unsigned int node_index, AssignmentContainer first, AssignmentContainer second, AssignmentContainer ac)
3906  """
3907  return _IMP_domino.DominoSampler_load_vertex_assignments(self, *args)
3908 
3909 
3910  def __str__(self):
3911  """__str__(DominoSampler self) -> std::string"""
3912  return _IMP_domino.DominoSampler___str__(self)
3913 
3914 
3915  def __repr__(self):
3916  """__repr__(DominoSampler self) -> std::string"""
3917  return _IMP_domino.DominoSampler___repr__(self)
3918 
3919 
3920  @staticmethod
3921  def get_from(o):
3922  return _object_cast_to_DominoSampler(o)
3923 
3924 DominoSampler_swigregister = _IMP_domino.DominoSampler_swigregister
3925 DominoSampler_swigregister(DominoSampler)
3926 
3927 class BranchAndBoundSampler(DiscreteSampler):
3928  """Proxy of C++ IMP::domino::BranchAndBoundSampler class"""
3929  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3930 
3931  def __init__(self, *args):
3932  """
3933  __init__(IMP::domino::BranchAndBoundSampler self, Model m, std::string name) -> BranchAndBoundSampler
3934  __init__(IMP::domino::BranchAndBoundSampler self, Model m) -> BranchAndBoundSampler
3935  __init__(IMP::domino::BranchAndBoundSampler self, Model m, ParticleStatesTable pst, std::string name) -> BranchAndBoundSampler
3936  __init__(IMP::domino::BranchAndBoundSampler self, Model m, ParticleStatesTable pst) -> BranchAndBoundSampler
3937  """
3938  this = _IMP_domino.new_BranchAndBoundSampler(*args)
3939  try:
3940  self.this.append(this)
3941  except:
3942  self.this = this
3943 
3944  def do_get_sample_assignments(self, known):
3945  """do_get_sample_assignments(BranchAndBoundSampler self, Subset known) -> IMP::domino::Assignments"""
3946  return _IMP_domino.BranchAndBoundSampler_do_get_sample_assignments(self, known)
3947 
3948 
3949  def get_version_info(self):
3950  """get_version_info(BranchAndBoundSampler self) -> VersionInfo"""
3951  return _IMP_domino.BranchAndBoundSampler_get_version_info(self)
3952 
3953 
3954  def __str__(self):
3955  """__str__(BranchAndBoundSampler self) -> std::string"""
3956  return _IMP_domino.BranchAndBoundSampler___str__(self)
3957 
3958 
3959  def __repr__(self):
3960  """__repr__(BranchAndBoundSampler self) -> std::string"""
3961  return _IMP_domino.BranchAndBoundSampler___repr__(self)
3962 
3963 
3964  @staticmethod
3965  def get_from(o):
3966  return _object_cast_to_BranchAndBoundSampler(o)
3967 
3968 BranchAndBoundSampler_swigregister = _IMP_domino.BranchAndBoundSampler_swigregister
3969 BranchAndBoundSampler_swigregister(BranchAndBoundSampler)
3970 
3971 
3972 def load_particle_states(s, ss, pst):
3973  """load_particle_states(Subset s, Assignment ss, ParticleStatesTable pst)"""
3974  return _IMP_domino.load_particle_states(s, ss, pst)
3975 
3976 def get_restraints(s, pst, dg, rs):
3977  """get_restraints(Subset s, ParticleStatesTable pst, IMP::DependencyGraph const & dg, RestraintSet rs) -> IMP::RestraintsTemp"""
3978  return _IMP_domino.get_restraints(s, pst, dg, rs)
3979 
3980 def get_index(particles, subset, excluded):
3981  """get_index(IMP::ParticlesTemp const & particles, Subset subset, IMP::domino::Subsets const & excluded) -> IMP::Ints"""
3982  return _IMP_domino.get_index(particles, subset, excluded)
3983 
3984 def get_partial_index(particles, subset, excluded):
3985  """get_partial_index(IMP::ParticlesTemp const & particles, Subset subset, IMP::domino::Subsets const & excluded) -> IMP::Ints"""
3986  return _IMP_domino.get_partial_index(particles, subset, excluded)
3987 
3988 def get_possible_interactions(ps, max_distance, pst):
3989  """get_possible_interactions(IMP::ParticlesTemp const & ps, double max_distance, ParticleStatesTable pst) -> IMP::ParticlePairsTemp"""
3990  return _IMP_domino.get_possible_interactions(ps, max_distance, pst)
3991 
3992 def get_embedding(s, a, pst):
3993  """get_embedding(Subset s, Assignment a, ParticleStatesTable pst) -> VectorKD"""
3994  return _IMP_domino.get_embedding(s, a, pst)
3995 
3996 def get_nearest_assignment(s, embedding, pst):
3997  """get_nearest_assignment(Subset s, VectorKD embedding, ParticleStatesTable pst) -> Assignment"""
3998  return _IMP_domino.get_nearest_assignment(s, embedding, pst)
3999 
4000 def get_distance_if_smaller_than(s, a, b, pst, metrics, max):
4001  """get_distance_if_smaller_than(Subset s, Assignment a, Assignment b, ParticleStatesTable pst, IMP::statistics::Metrics const & metrics, double max) -> double"""
4002  return _IMP_domino.get_distance_if_smaller_than(s, a, b, pst, metrics, max)
4003 
4004 def load_leaf_assignments(subset, at, ac):
4005  """load_leaf_assignments(Subset subset, AssignmentsTable at, AssignmentContainer ac)"""
4006  return _IMP_domino.load_leaf_assignments(subset, at, ac)
4007 
4008 def load_merged_assignments(first_subset, first, second_subset, second, filters, ret):
4009  """load_merged_assignments(Subset first_subset, AssignmentContainer first, Subset second_subset, AssignmentContainer second, IMP::domino::SubsetFilterTablesTemp const & filters, AssignmentContainer ret)"""
4010  return _IMP_domino.load_merged_assignments(first_subset, first, second_subset, second, filters, ret)
4011 
4012 def load_merged_assignments_random_order(first_subset, first, second_subset, second, filters, maximum_tries, ret):
4013  """load_merged_assignments_random_order(Subset first_subset, AssignmentContainer first, Subset second_subset, AssignmentContainer second, IMP::domino::SubsetFilterTablesTemp const & filters, unsigned int maximum_tries, AssignmentContainer ret)"""
4014  return _IMP_domino.load_merged_assignments_random_order(first_subset, first, second_subset, second, filters, maximum_tries, ret)
4015 
4016 def get_state_clusters(subset, states, pst, resolution):
4017  """get_state_clusters(Subset subset, IMP::domino::Assignments const & states, ParticleStatesTable pst, double resolution) -> IMP::domino::Assignments"""
4018  return _IMP_domino.get_state_clusters(subset, states, pst, resolution)
4019 class DependencyScoreState(IMP.ScoreState):
4020  """Proxy of C++ IMP::domino::DependencyScoreState class"""
4021  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4022 
4023  def __init__(self, m):
4024  """__init__(IMP::domino::DependencyScoreState self, Model m) -> DependencyScoreState"""
4025  this = _IMP_domino.new_DependencyScoreState(m)
4026  try:
4027  self.this.append(this)
4028  except:
4029  self.this = this
4030 
4031  def set_input_particles(self, pt):
4032  """set_input_particles(DependencyScoreState self, IMP::ParticlesTemp const & pt)"""
4033  return _IMP_domino.DependencyScoreState_set_input_particles(self, pt)
4034 
4035 
4036  def set_output_particles(self, pt):
4037  """set_output_particles(DependencyScoreState self, IMP::ParticlesTemp const & pt)"""
4038  return _IMP_domino.DependencyScoreState_set_output_particles(self, pt)
4039 
4040 
4041  def set_input_containers(self, pt):
4042  """set_input_containers(DependencyScoreState self, IMP::ContainersTemp const & pt)"""
4043  return _IMP_domino.DependencyScoreState_set_input_containers(self, pt)
4044 
4045 
4046  def set_output_containers(self, pt):
4047  """set_output_containers(DependencyScoreState self, IMP::ContainersTemp const & pt)"""
4048  return _IMP_domino.DependencyScoreState_set_output_containers(self, pt)
4049 
4050 
4051  def get_version_info(self):
4052  """get_version_info(DependencyScoreState self) -> VersionInfo"""
4053  return _IMP_domino.DependencyScoreState_get_version_info(self)
4054 
4055 
4056  def __str__(self):
4057  """__str__(DependencyScoreState self) -> std::string"""
4058  return _IMP_domino.DependencyScoreState___str__(self)
4059 
4060 
4061  def __repr__(self):
4062  """__repr__(DependencyScoreState self) -> std::string"""
4063  return _IMP_domino.DependencyScoreState___repr__(self)
4064 
4065 
4066  @staticmethod
4067  def get_from(o):
4068  return _object_cast_to_DependencyScoreState(o)
4069 
4070 DependencyScoreState_swigregister = _IMP_domino.DependencyScoreState_swigregister
4071 DependencyScoreState_swigregister(DependencyScoreState)
4072 
4073 
4074 def _get_ints_list(input):
4075  """_get_ints_list(IMP::IntsList const & input) -> IMP::IntsList"""
4076  return _IMP_domino._get_ints_list(input)
4077 
4078 def get_module_version():
4079  """get_module_version() -> std::string const"""
4080  return _IMP_domino.get_module_version()
4081 
4082 def get_example_path(fname):
4083  """get_example_path(std::string fname) -> std::string"""
4084  return _IMP_domino.get_example_path(fname)
4085 
4086 def get_data_path(fname):
4087  """get_data_path(std::string fname) -> std::string"""
4088  return _IMP_domino.get_data_path(fname)
4089 
4090 from . import _version_check
4091 _version_check.check_version(get_module_version())
4092 __version__ = get_module_version()
4093 
4094 
4095 
Various classes to hold sets of particles.
Assignments get_state_clusters(const Subset &subset, const Assignments &states, ParticleStatesTable *pst, double resolution)
Return subset of the passed states which are representative.
SubsetGraph get_junction_tree(const InteractionGraph &ig)
Vector< VectorD< D > > get_vertices(const BoundingBoxD< D > &bb)
Return a list of the 2^D bounding points for the bounding box.
Definition: BoundingBoxD.h:274
Make CGAL functionality available to IMP.
BoundingBoxD< D > get_union(BoundingBoxD< D > a, const BoundingBoxD< D > &b)
Return the union bounding box.
Definition: BoundingBoxD.h:254
Assignment get_nearest_assignment(const Subset &s, const algebra::VectorKD &embedding, ParticleStatesTable *pst)
Return the nearest assignment from an embedding.
ParticlesTemp get_particles(Model *m, const ParticleIndexes &ps)
Subsets get_subsets(const SubsetGraph &g)
Gets all of the Subsets of a SubsetGraph.
double get_distance_if_smaller_than(const Subset &s, const Assignment &a, const Assignment &b, ParticleStatesTable *pst, const statistics::Metrics &metrics, double max)
Base class for all samplers.
Definition: Sampler.h:31
boost::graph SubsetGraph
Definition: subset_graphs.h:23
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
MergeTree get_balanced_merge_tree(const SubsetGraph &junction_tree)
Composable functors to implement scores via compile-time composition.
ParticlePairsTemp get_possible_interactions(const ParticlesTemp &ps, double max_distance, ParticleStatesTable *pst)
display::Geometries get_subset_graph_geometry(const SubsetGraph &ig)
InteractionGraph get_interaction_graph(ScoringFunctionAdaptor rs, const ParticleStatesTable *pst)
Code to compute statistical measures.
BoundingBoxD< D > get_intersection(const BoundingBoxD< D > &a, const BoundingBoxD< D > &b)
Return the intersecting bounding box.
Definition: BoundingBoxD.h:223
MergeTree get_merge_tree(ScoringFunctionAdaptor input, const ParticleStatesTable *pst)
Ints get_index(const ParticlesTemp &particles, const Subset &subset, const Subsets &excluded)
Common base class for heavy weight IMP objects.
Definition: Object.h:106
ScoreStates maintain invariants in the Model.
Definition: ScoreState.h:53
ParticlesTemp get_order(const Subset &s, const SubsetFilterTables &sft)
Ints get_partial_index(const ParticlesTemp &particles, const Subset &subset, const Subsets &excluded)
boost::graph MergeTree
void load_leaf_assignments(const Subset &subset, AssignmentsTable *at, AssignmentContainer *ac)
Fill in assignments for a leaf.
void load_merged_assignments(const Subset &first_subset, AssignmentContainer *first, const Subset &second_subset, AssignmentContainer *second, const SubsetFilterTablesTemp &filters, AssignmentContainer *ret)
Fill in assignments for an internal node.
algebra::VectorKD get_embedding(const Subset &s, const Assignment &a, ParticleStatesTable *pst)
Return an embedding for an assignment.
void add_restraints(RMF::FileHandle fh, const Restraints &hs)
Version and module information for Objects.
Definition: VersionInfo.h:28
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
void load_merged_assignments_random_order(const Subset &first_subset, AssignmentContainer *first, const Subset &second_subset, AssignmentContainer *second, const SubsetFilterTablesTemp &filters, unsigned int maximum_tries, AssignmentContainer *ret)
Sample from the merged assignments.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
std::string show_graphviz(Graph g)
SubsetGraph get_restraint_graph(ScoringFunctionAdaptor rs, const ParticleStatesTable *pst)
display::Geometries get_interaction_graph_geometry(const InteractionGraph &ig)
void load_particle_states(const Subset &s, const Assignment &ss, const ParticleStatesTable *pst)
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
boost::graph InteractionGraph
Definition: subset_graphs.h:33
Support for the RMF file format for storing hierarchical molecular data and markup.
Slice get_slice(Subset outer, Subset inner, const Subsets &excluded)
Definition: Slice.h:66