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IMP Reference Guide  2.6.0
The Integrative Modeling Platform
benchmark/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2016 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_benchmark', [dirname(__file__)])
23  except ImportError:
24  import _IMP_benchmark
25  return _IMP_benchmark
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_benchmark', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_benchmark = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_benchmark
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_BENCHMARK_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_BENCHMARK_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_benchmark.delete_IMP_BENCHMARK_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_BENCHMARK_SwigPyIterator self) -> PyObject *"""
125  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_BENCHMARK_SwigPyIterator self, size_t n=1) -> IMP_BENCHMARK_SwigPyIterator
131  incr(IMP_BENCHMARK_SwigPyIterator self) -> IMP_BENCHMARK_SwigPyIterator
132  """
133  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_BENCHMARK_SwigPyIterator self, size_t n=1) -> IMP_BENCHMARK_SwigPyIterator
139  decr(IMP_BENCHMARK_SwigPyIterator self) -> IMP_BENCHMARK_SwigPyIterator
140  """
141  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_BENCHMARK_SwigPyIterator self, IMP_BENCHMARK_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_BENCHMARK_SwigPyIterator self, IMP_BENCHMARK_SwigPyIterator x) -> bool"""
151  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_BENCHMARK_SwigPyIterator self) -> IMP_BENCHMARK_SwigPyIterator"""
156  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_BENCHMARK_SwigPyIterator self) -> PyObject *"""
161  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_BENCHMARK_SwigPyIterator self) -> PyObject *"""
166  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_BENCHMARK_SwigPyIterator self) -> PyObject *"""
171  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_BENCHMARK_SwigPyIterator self, ptrdiff_t n) -> IMP_BENCHMARK_SwigPyIterator"""
176  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_BENCHMARK_SwigPyIterator self, IMP_BENCHMARK_SwigPyIterator x) -> bool"""
181  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_BENCHMARK_SwigPyIterator self, IMP_BENCHMARK_SwigPyIterator x) -> bool"""
186  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_BENCHMARK_SwigPyIterator self, ptrdiff_t n) -> IMP_BENCHMARK_SwigPyIterator"""
191  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_BENCHMARK_SwigPyIterator self, ptrdiff_t n) -> IMP_BENCHMARK_SwigPyIterator"""
196  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_BENCHMARK_SwigPyIterator self, ptrdiff_t n) -> IMP_BENCHMARK_SwigPyIterator"""
201  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_BENCHMARK_SwigPyIterator self, ptrdiff_t n) -> IMP_BENCHMARK_SwigPyIterator
207  __sub__(IMP_BENCHMARK_SwigPyIterator self, IMP_BENCHMARK_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_BENCHMARK_SwigPyIterator_swigregister = _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_swigregister
214 IMP_BENCHMARK_SwigPyIterator_swigregister(IMP_BENCHMARK_SwigPyIterator)
215 
216 
217 _value_types=[]
218 _object_types=[]
219 _raii_types=[]
220 _plural_types=[]
221 
222 
223 _IMP_benchmark.IMP_DEBUG_swigconstant(_IMP_benchmark)
224 IMP_DEBUG = _IMP_benchmark.IMP_DEBUG
225 
226 _IMP_benchmark.IMP_RELEASE_swigconstant(_IMP_benchmark)
227 IMP_RELEASE = _IMP_benchmark.IMP_RELEASE
228 
229 _IMP_benchmark.IMP_SILENT_swigconstant(_IMP_benchmark)
230 IMP_SILENT = _IMP_benchmark.IMP_SILENT
231 
232 _IMP_benchmark.IMP_PROGRESS_swigconstant(_IMP_benchmark)
233 IMP_PROGRESS = _IMP_benchmark.IMP_PROGRESS
234 
235 _IMP_benchmark.IMP_TERSE_swigconstant(_IMP_benchmark)
236 IMP_TERSE = _IMP_benchmark.IMP_TERSE
237 
238 _IMP_benchmark.IMP_VERBOSE_swigconstant(_IMP_benchmark)
239 IMP_VERBOSE = _IMP_benchmark.IMP_VERBOSE
240 
241 _IMP_benchmark.IMP_MEMORY_swigconstant(_IMP_benchmark)
242 IMP_MEMORY = _IMP_benchmark.IMP_MEMORY
243 
244 _IMP_benchmark.IMP_NONE_swigconstant(_IMP_benchmark)
245 IMP_NONE = _IMP_benchmark.IMP_NONE
246 
247 _IMP_benchmark.IMP_USAGE_swigconstant(_IMP_benchmark)
248 IMP_USAGE = _IMP_benchmark.IMP_USAGE
249 
250 _IMP_benchmark.IMP_INTERNAL_swigconstant(_IMP_benchmark)
251 IMP_INTERNAL = _IMP_benchmark.IMP_INTERNAL
252 
253 _IMP_benchmark.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_benchmark)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_benchmark.IMP_KERNEL_HAS_LOG4CXX
255 
256 _IMP_benchmark.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_benchmark)
257 IMP_COMPILER_HAS_AUTO = _IMP_benchmark.IMP_COMPILER_HAS_AUTO
258 
259 _IMP_benchmark.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_benchmark)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_benchmark.IMP_COMPILER_HAS_DEBUG_VECTOR
261 
262 _IMP_benchmark.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_benchmark)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_benchmark.IMP_COMPILER_HAS_UNIQUE_PTR
264 
265 _IMP_benchmark.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_benchmark)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_benchmark.IMP_KERNEL_HAS_BOOST_RANDOM
267 
268 _IMP_benchmark.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_benchmark)
269 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_benchmark.IMP_KERNEL_HAS_GPERFTOOLS
270 
271 _IMP_benchmark.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_benchmark)
272 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_benchmark.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
273 
274 _IMP_benchmark.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_benchmark)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_benchmark.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
276 
277 _IMP_benchmark.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_benchmark)
278 IMPKERNEL_SHOW_WARNINGS = _IMP_benchmark.IMPKERNEL_SHOW_WARNINGS
279 
280 import sys
281 class _DirectorObjects(object):
282  """@internal Simple class to keep references to director objects
283  to prevent premature deletion."""
284  def __init__(self):
285  self._objects = []
286  def register(self, obj):
287  """Take a reference to a director object; will only work for
288  refcounted C++ classes"""
289  if hasattr(obj, 'get_ref_count'):
290  self._objects.append(obj)
291  def cleanup(self):
292  """Only drop our reference and allow cleanup by Python if no other
293  Python references exist (we hold 3 references: one in self._objects,
294  one in x, and one in the argument list for getrefcount) *and* no
295  other C++ references exist (the Python object always holds one)"""
296  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
297  or x.get_ref_count() > 1]
298 # Do in two steps so the references are kept until the end of the
299 # function (deleting references may trigger a fresh call to this method)
300  self._objects = objs
301  def get_object_count(self):
302  """Get number of director objects (useful for testing only)"""
303  return len(self._objects)
304 _director_objects = _DirectorObjects()
305 
306 class _ostream(object):
307  """Proxy of C++ std::ostream class"""
308  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
309 
310  def __init__(self, *args, **kwargs):
311  raise AttributeError("No constructor defined")
312  __repr__ = _swig_repr
313 
314  def write(self, osa_buf):
315  """write(_ostream self, char const * osa_buf)"""
316  return _IMP_benchmark._ostream_write(self, osa_buf)
317 
318 _ostream_swigregister = _IMP_benchmark._ostream_swigregister
319 _ostream_swigregister(_ostream)
320 
321 
322 _IMP_benchmark.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_benchmark)
323 IMP_COMPILER_HAS_OVERRIDE = _IMP_benchmark.IMP_COMPILER_HAS_OVERRIDE
324 
325 _IMP_benchmark.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_benchmark)
326 IMP_COMPILER_HAS_FINAL = _IMP_benchmark.IMP_COMPILER_HAS_FINAL
327 
328 _IMP_benchmark.IMP_HAS_NOEXCEPT_swigconstant(_IMP_benchmark)
329 IMP_HAS_NOEXCEPT = _IMP_benchmark.IMP_HAS_NOEXCEPT
330 import IMP
331 
332 _IMP_benchmark.IMP_BENCHMARK_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_benchmark)
333 IMP_BENCHMARK_HAS_BOOST_FILESYSTEM = _IMP_benchmark.IMP_BENCHMARK_HAS_BOOST_FILESYSTEM
334 
335 _IMP_benchmark.IMP_BENCHMARK_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_benchmark)
336 IMP_BENCHMARK_HAS_BOOST_PROGRAMOPTIONS = _IMP_benchmark.IMP_BENCHMARK_HAS_BOOST_PROGRAMOPTIONS
337 
338 _IMP_benchmark.IMP_BENCHMARK_HAS_BOOST_RANDOM_swigconstant(_IMP_benchmark)
339 IMP_BENCHMARK_HAS_BOOST_RANDOM = _IMP_benchmark.IMP_BENCHMARK_HAS_BOOST_RANDOM
340 
341 _IMP_benchmark.IMP_BENCHMARK_HAS_BOOST_SYSTEM_swigconstant(_IMP_benchmark)
342 IMP_BENCHMARK_HAS_BOOST_SYSTEM = _IMP_benchmark.IMP_BENCHMARK_HAS_BOOST_SYSTEM
343 
344 _IMP_benchmark.IMPBENCHMARK_SHOW_WARNINGS_swigconstant(_IMP_benchmark)
345 IMPBENCHMARK_SHOW_WARNINGS = _IMP_benchmark.IMPBENCHMARK_SHOW_WARNINGS
346 
347 _raii_types.append("Profiler")
348 
349 
350 def report(*args):
351  """
352  report(std::string benchmark, std::string algorithm, double time, double check)
353  report(std::string benchmark, double time, double check)
354  """
355  return _IMP_benchmark.report(*args)
356 
357 def get_return_value():
358  """get_return_value() -> int"""
359  return _IMP_benchmark.get_return_value()
360 class Profiler(IMP._RAII):
361  """Proxy of C++ IMP::benchmark::Profiler class"""
362  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
363 
364  def __init__(self, *args):
365  """
366  __init__(IMP::benchmark::Profiler self) -> Profiler
367  __init__(IMP::benchmark::Profiler self, std::string name) -> Profiler
368  """
369  this = _IMP_benchmark.new_Profiler(*args)
370  try:
371  self.this.append(this)
372  except:
373  self.this = this
374 
375  def set(self, name):
376  """set(Profiler self, std::string name)"""
377  return _IMP_benchmark.Profiler_set(self, name)
378 
379 
380  def reset(self):
381  """reset(Profiler self)"""
382  return _IMP_benchmark.Profiler_reset(self)
383 
384  __swig_destroy__ = _IMP_benchmark.delete_Profiler
385  __del__ = lambda self: None
386 
387  def show(self, *args):
388  """
389  show(Profiler self, _ostream out)
390  show(Profiler self)
391  """
392  return _IMP_benchmark.Profiler_show(self, *args)
393 
394 
395  def __enter__(self):
396  return self
397  def __exit__(self, exc_type, exc_val, exc_tb):
398  self.reset()
399  return False
400 
401 
402  def __str__(self):
403  """__str__(Profiler self) -> std::string"""
404  return _IMP_benchmark.Profiler___str__(self)
405 
406 
407  def __repr__(self):
408  """__repr__(Profiler self) -> std::string"""
409  return _IMP_benchmark.Profiler___repr__(self)
410 
411 Profiler_swigregister = _IMP_benchmark.Profiler_swigregister
412 Profiler_swigregister(Profiler)
413 
414 
415 def get_module_version():
416  """get_module_version() -> std::string const"""
417  return _IMP_benchmark.get_module_version()
418 
419 def get_example_path(fname):
420  """get_example_path(std::string fname) -> std::string"""
421  return _IMP_benchmark.get_example_path(fname)
422 
423 def get_data_path(fname):
424  """get_data_path(std::string fname) -> std::string"""
425  return _IMP_benchmark.get_data_path(fname)
426 
427 from . import _version_check
428 _version_check.check_version(get_module_version())
429 __version__ = get_module_version()
430 
431 
432 
void report(std::string benchmark, std::string algorithm, double time, double check)
Report a benchmark result in a standard way.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.