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IMP Reference Guide  2.5.0
The Integrative Modeling Platform
pepdock/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.5
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2015 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_pepdock', [dirname(__file__)])
23  except ImportError:
24  import _IMP_pepdock
25  return _IMP_pepdock
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_pepdock', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_pepdock = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_pepdock
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_PEPDOCK_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_PEPDOCK_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_pepdock.delete_IMP_PEPDOCK_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
125  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_PEPDOCK_SwigPyIterator self, size_t n=1) -> IMP_PEPDOCK_SwigPyIterator
131  incr(IMP_PEPDOCK_SwigPyIterator self) -> IMP_PEPDOCK_SwigPyIterator
132  """
133  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_PEPDOCK_SwigPyIterator self, size_t n=1) -> IMP_PEPDOCK_SwigPyIterator
139  decr(IMP_PEPDOCK_SwigPyIterator self) -> IMP_PEPDOCK_SwigPyIterator
140  """
141  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> bool"""
151  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_PEPDOCK_SwigPyIterator self) -> IMP_PEPDOCK_SwigPyIterator"""
156  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
161  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
166  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
171  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
176  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> bool"""
181  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> bool"""
186  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
191  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
196  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
201  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator
207  __sub__(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_PEPDOCK_SwigPyIterator_swigregister = _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_swigregister
214 IMP_PEPDOCK_SwigPyIterator_swigregister(IMP_PEPDOCK_SwigPyIterator)
215 
216 _value_types=[]
217 _object_types=[]
218 _raii_types=[]
219 _plural_types=[]
220 
221 
222 _IMP_pepdock.IMP_DEBUG_swigconstant(_IMP_pepdock)
223 IMP_DEBUG = _IMP_pepdock.IMP_DEBUG
224 
225 _IMP_pepdock.IMP_RELEASE_swigconstant(_IMP_pepdock)
226 IMP_RELEASE = _IMP_pepdock.IMP_RELEASE
227 
228 _IMP_pepdock.IMP_SILENT_swigconstant(_IMP_pepdock)
229 IMP_SILENT = _IMP_pepdock.IMP_SILENT
230 
231 _IMP_pepdock.IMP_PROGRESS_swigconstant(_IMP_pepdock)
232 IMP_PROGRESS = _IMP_pepdock.IMP_PROGRESS
233 
234 _IMP_pepdock.IMP_TERSE_swigconstant(_IMP_pepdock)
235 IMP_TERSE = _IMP_pepdock.IMP_TERSE
236 
237 _IMP_pepdock.IMP_VERBOSE_swigconstant(_IMP_pepdock)
238 IMP_VERBOSE = _IMP_pepdock.IMP_VERBOSE
239 
240 _IMP_pepdock.IMP_MEMORY_swigconstant(_IMP_pepdock)
241 IMP_MEMORY = _IMP_pepdock.IMP_MEMORY
242 
243 _IMP_pepdock.IMP_NONE_swigconstant(_IMP_pepdock)
244 IMP_NONE = _IMP_pepdock.IMP_NONE
245 
246 _IMP_pepdock.IMP_USAGE_swigconstant(_IMP_pepdock)
247 IMP_USAGE = _IMP_pepdock.IMP_USAGE
248 
249 _IMP_pepdock.IMP_INTERNAL_swigconstant(_IMP_pepdock)
250 IMP_INTERNAL = _IMP_pepdock.IMP_INTERNAL
251 
252 _IMP_pepdock.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_pepdock)
253 IMP_KERNEL_HAS_LOG4CXX = _IMP_pepdock.IMP_KERNEL_HAS_LOG4CXX
254 
255 _IMP_pepdock.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_pepdock)
256 IMP_COMPILER_HAS_AUTO = _IMP_pepdock.IMP_COMPILER_HAS_AUTO
257 
258 _IMP_pepdock.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_pepdock)
259 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_pepdock.IMP_COMPILER_HAS_DEBUG_VECTOR
260 
261 _IMP_pepdock.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
262 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_KERNEL_HAS_BOOST_RANDOM
263 
264 _IMP_pepdock.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_pepdock)
265 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_pepdock.IMP_KERNEL_HAS_GPERFTOOLS
266 
267 _IMP_pepdock.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_pepdock)
268 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_pepdock.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
269 
270 _IMP_pepdock.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_pepdock)
271 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_pepdock.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
272 
273 _IMP_pepdock.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
274 IMPKERNEL_SHOW_WARNINGS = _IMP_pepdock.IMPKERNEL_SHOW_WARNINGS
275 import sys
276 class _DirectorObjects(object):
277  """@internal Simple class to keep references to director objects
278  to prevent premature deletion."""
279  def __init__(self):
280  self._objects = []
281  def register(self, obj):
282  """Take a reference to a director object; will only work for
283  refcounted C++ classes"""
284  if hasattr(obj, 'get_ref_count'):
285  self._objects.append(obj)
286  def cleanup(self):
287  """Only drop our reference and allow cleanup by Python if no other
288  Python references exist (we hold 3 references: one in self._objects,
289  one in x, and one in the argument list for getrefcount) *and* no
290  other C++ references exist (the Python object always holds one)"""
291  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
292  or x.get_ref_count() > 1]
293  # Do in two steps so the references are kept until the end of the
294  # function (deleting references may trigger a fresh call to this method)
295  self._objects = objs
296  def get_object_count(self):
297  """Get number of director objects (useful for testing only)"""
298  return len(self._objects)
299 _director_objects = _DirectorObjects()
300 
301 class _ostream(object):
302  """Proxy of C++ std::ostream class"""
303  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
304 
305  def __init__(self, *args, **kwargs):
306  raise AttributeError("No constructor defined")
307  __repr__ = _swig_repr
308 
309  def write(self, osa_buf):
310  """write(_ostream self, char const * osa_buf)"""
311  return _IMP_pepdock._ostream_write(self, osa_buf)
312 
313 _ostream_swigregister = _IMP_pepdock._ostream_swigregister
314 _ostream_swigregister(_ostream)
315 
316 
317 _IMP_pepdock.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_pepdock)
318 IMP_COMPILER_HAS_OVERRIDE = _IMP_pepdock.IMP_COMPILER_HAS_OVERRIDE
319 
320 _IMP_pepdock.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_pepdock)
321 IMP_COMPILER_HAS_FINAL = _IMP_pepdock.IMP_COMPILER_HAS_FINAL
322 
323 _IMP_pepdock.IMP_HAS_NOEXCEPT_swigconstant(_IMP_pepdock)
324 IMP_HAS_NOEXCEPT = _IMP_pepdock.IMP_HAS_NOEXCEPT
325 import IMP
326 
327 _IMP_pepdock.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
328 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_CGAL_HAS_BOOST_FILESYSTEM
329 
330 _IMP_pepdock.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
331 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
332 
333 _IMP_pepdock.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
334 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_CGAL_HAS_BOOST_RANDOM
335 
336 _IMP_pepdock.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
337 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_CGAL_HAS_BOOST_SYSTEM
338 
339 _IMP_pepdock.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
340 IMPCGAL_SHOW_WARNINGS = _IMP_pepdock.IMPCGAL_SHOW_WARNINGS
341 import IMP.cgal
342 
343 _IMP_pepdock.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
344 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_pepdock.IMP_ALGEBRA_HAS_IMP_CGAL
345 
346 _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
347 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
348 
349 _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
350 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
351 
352 _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
353 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_RANDOM
354 
355 _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
356 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_SYSTEM
357 
358 _IMP_pepdock.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_pepdock)
359 IMP_ALGEBRA_HAS_CGAL = _IMP_pepdock.IMP_ALGEBRA_HAS_CGAL
360 
361 _IMP_pepdock.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_pepdock)
362 IMP_ALGEBRA_HAS_ANN = _IMP_pepdock.IMP_ALGEBRA_HAS_ANN
363 
364 _IMP_pepdock.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
365 IMPALGEBRA_SHOW_WARNINGS = _IMP_pepdock.IMPALGEBRA_SHOW_WARNINGS
366 import IMP.algebra
367 
368 _IMP_pepdock.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
369 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_pepdock.IMP_DISPLAY_HAS_IMP_CGAL
370 
371 _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
372 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
373 
374 _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
375 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
376 
377 _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
378 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_RANDOM
379 
380 _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
381 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_SYSTEM
382 
383 _IMP_pepdock.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_pepdock)
384 IMP_DISPLAY_HAS_CGAL = _IMP_pepdock.IMP_DISPLAY_HAS_CGAL
385 
386 _IMP_pepdock.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
387 IMPDISPLAY_SHOW_WARNINGS = _IMP_pepdock.IMPDISPLAY_SHOW_WARNINGS
388 import IMP.display
389 
390 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
391 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
392 
393 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
394 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
395 
396 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
397 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
398 
399 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
400 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
401 
402 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
403 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
404 
405 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_pepdock)
406 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_CGAL
407 
408 _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_pepdock)
409 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_HDF5
410 
411 _IMP_pepdock.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
412 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_pepdock.IMPSCOREFUNCTOR_SHOW_WARNINGS
413 import IMP.score_functor
414 
415 _IMP_pepdock.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
416 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_pepdock.IMP_STATISTICS_HAS_IMP_CGAL
417 
418 _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
419 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
420 
421 _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
422 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
423 
424 _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
425 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_RANDOM
426 
427 _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
428 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_SYSTEM
429 
430 _IMP_pepdock.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_pepdock)
431 IMP_STATISTICS_HAS_CGAL = _IMP_pepdock.IMP_STATISTICS_HAS_CGAL
432 
433 _IMP_pepdock.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
434 IMPSTATISTICS_SHOW_WARNINGS = _IMP_pepdock.IMPSTATISTICS_SHOW_WARNINGS
435 import IMP.statistics
436 
437 _IMP_pepdock.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
438 IMP_CORE_HAS_IMP_CGAL = _IMP_pepdock.IMP_CORE_HAS_IMP_CGAL
439 
440 _IMP_pepdock.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_pepdock)
441 IMP_CORE_HAS_IMP_KERNEL = _IMP_pepdock.IMP_CORE_HAS_IMP_KERNEL
442 
443 _IMP_pepdock.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
444 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_CORE_HAS_BOOST_FILESYSTEM
445 
446 _IMP_pepdock.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
447 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
448 
449 _IMP_pepdock.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
450 IMP_CORE_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_CORE_HAS_BOOST_RANDOM
451 
452 _IMP_pepdock.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
453 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_CORE_HAS_BOOST_SYSTEM
454 
455 _IMP_pepdock.IMP_CORE_HAS_CGAL_swigconstant(_IMP_pepdock)
456 IMP_CORE_HAS_CGAL = _IMP_pepdock.IMP_CORE_HAS_CGAL
457 
458 _IMP_pepdock.IMP_CORE_HAS_HDF5_swigconstant(_IMP_pepdock)
459 IMP_CORE_HAS_HDF5 = _IMP_pepdock.IMP_CORE_HAS_HDF5
460 
461 _IMP_pepdock.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
462 IMPCORE_SHOW_WARNINGS = _IMP_pepdock.IMPCORE_SHOW_WARNINGS
463 import IMP.core
464 
465 _IMP_pepdock.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_pepdock)
466 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_ALGEBRA
467 
468 _IMP_pepdock.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
469 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_CGAL
470 
471 _IMP_pepdock.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_pepdock)
472 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_DISPLAY
473 
474 _IMP_pepdock.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_pepdock)
475 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_KERNEL
476 
477 _IMP_pepdock.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_pepdock)
478 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
479 
480 _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
481 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
482 
483 _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
484 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
485 
486 _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
487 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_RANDOM
488 
489 _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
490 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_SYSTEM
491 
492 _IMP_pepdock.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_pepdock)
493 IMP_CONTAINER_HAS_CGAL = _IMP_pepdock.IMP_CONTAINER_HAS_CGAL
494 
495 _IMP_pepdock.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_pepdock)
496 IMP_CONTAINER_HAS_HDF5 = _IMP_pepdock.IMP_CONTAINER_HAS_HDF5
497 
498 _IMP_pepdock.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
499 IMPCONTAINER_SHOW_WARNINGS = _IMP_pepdock.IMPCONTAINER_SHOW_WARNINGS
500 import IMP.container
501 
502 _IMP_pepdock.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
503 IMP_ATOM_HAS_IMP_CGAL = _IMP_pepdock.IMP_ATOM_HAS_IMP_CGAL
504 
505 _IMP_pepdock.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_pepdock)
506 IMP_ATOM_HAS_IMP_KERNEL = _IMP_pepdock.IMP_ATOM_HAS_IMP_KERNEL
507 
508 _IMP_pepdock.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_pepdock)
509 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
510 
511 _IMP_pepdock.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
512 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
513 
514 _IMP_pepdock.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
515 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_ATOM_HAS_BOOST_RANDOM
516 
517 _IMP_pepdock.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_pepdock)
518 IMP_ATOM_HAS_BOOST_REGEX = _IMP_pepdock.IMP_ATOM_HAS_BOOST_REGEX
519 
520 _IMP_pepdock.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
521 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_ATOM_HAS_BOOST_SYSTEM
522 
523 _IMP_pepdock.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_pepdock)
524 IMP_ATOM_HAS_CGAL = _IMP_pepdock.IMP_ATOM_HAS_CGAL
525 
526 _IMP_pepdock.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_pepdock)
527 IMP_ATOM_HAS_HDF5 = _IMP_pepdock.IMP_ATOM_HAS_HDF5
528 
529 _IMP_pepdock.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
530 IMPATOM_SHOW_WARNINGS = _IMP_pepdock.IMPATOM_SHOW_WARNINGS
531 
532 _IMP_pepdock.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_pepdock)
533 IMP_ATOM_TYPE_INDEX = _IMP_pepdock.IMP_ATOM_TYPE_INDEX
534 
535 _IMP_pepdock.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_pepdock)
536 IMP_RESIDUE_TYPE_INDEX = _IMP_pepdock.IMP_RESIDUE_TYPE_INDEX
537 
538 _IMP_pepdock.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_pepdock)
539 IMP_HIERARCHY_TYPE_INDEX = _IMP_pepdock.IMP_HIERARCHY_TYPE_INDEX
540 import IMP.atom
541 
542 _IMP_pepdock.IMP_RMF_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
543 IMP_RMF_HAS_IMP_CGAL = _IMP_pepdock.IMP_RMF_HAS_IMP_CGAL
544 
545 _IMP_pepdock.IMP_RMF_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_pepdock)
546 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
547 
548 _IMP_pepdock.IMP_RMF_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
549 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_RMF_HAS_BOOST_FILESYSTEM
550 
551 _IMP_pepdock.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
552 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
553 
554 _IMP_pepdock.IMP_RMF_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
555 IMP_RMF_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_RMF_HAS_BOOST_RANDOM
556 
557 _IMP_pepdock.IMP_RMF_HAS_BOOST_REGEX_swigconstant(_IMP_pepdock)
558 IMP_RMF_HAS_BOOST_REGEX = _IMP_pepdock.IMP_RMF_HAS_BOOST_REGEX
559 
560 _IMP_pepdock.IMP_RMF_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
561 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_RMF_HAS_BOOST_SYSTEM
562 
563 _IMP_pepdock.IMP_RMF_HAS_CGAL_swigconstant(_IMP_pepdock)
564 IMP_RMF_HAS_CGAL = _IMP_pepdock.IMP_RMF_HAS_CGAL
565 
566 _IMP_pepdock.IMP_RMF_HAS_HDF5_swigconstant(_IMP_pepdock)
567 IMP_RMF_HAS_HDF5 = _IMP_pepdock.IMP_RMF_HAS_HDF5
568 
569 _IMP_pepdock.IMPRMF_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
570 IMPRMF_SHOW_WARNINGS = _IMP_pepdock.IMPRMF_SHOW_WARNINGS
571 import IMP.rmf
572 import RMF
573 
574 _IMP_pepdock.IMP_DOMINO_HAS_IMP_ATOM_swigconstant(_IMP_pepdock)
575 IMP_DOMINO_HAS_IMP_ATOM = _IMP_pepdock.IMP_DOMINO_HAS_IMP_ATOM
576 
577 _IMP_pepdock.IMP_DOMINO_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
578 IMP_DOMINO_HAS_IMP_CGAL = _IMP_pepdock.IMP_DOMINO_HAS_IMP_CGAL
579 
580 _IMP_pepdock.IMP_DOMINO_HAS_IMP_KERNEL_swigconstant(_IMP_pepdock)
581 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_pepdock.IMP_DOMINO_HAS_IMP_KERNEL
582 
583 _IMP_pepdock.IMP_DOMINO_HAS_IMP_RMF_swigconstant(_IMP_pepdock)
584 IMP_DOMINO_HAS_IMP_RMF = _IMP_pepdock.IMP_DOMINO_HAS_IMP_RMF
585 
586 _IMP_pepdock.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_pepdock)
587 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
588 
589 _IMP_pepdock.IMP_DOMINO_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
590 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_FILESYSTEM
591 
592 _IMP_pepdock.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
593 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
594 
595 _IMP_pepdock.IMP_DOMINO_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
596 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_RANDOM
597 
598 _IMP_pepdock.IMP_DOMINO_HAS_BOOST_REGEX_swigconstant(_IMP_pepdock)
599 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_REGEX
600 
601 _IMP_pepdock.IMP_DOMINO_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
602 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_SYSTEM
603 
604 _IMP_pepdock.IMP_DOMINO_HAS_CGAL_swigconstant(_IMP_pepdock)
605 IMP_DOMINO_HAS_CGAL = _IMP_pepdock.IMP_DOMINO_HAS_CGAL
606 
607 _IMP_pepdock.IMP_DOMINO_HAS_HDF5_swigconstant(_IMP_pepdock)
608 IMP_DOMINO_HAS_HDF5 = _IMP_pepdock.IMP_DOMINO_HAS_HDF5
609 
610 _IMP_pepdock.IMP_DOMINO_HAS_RMF_swigconstant(_IMP_pepdock)
611 IMP_DOMINO_HAS_RMF = _IMP_pepdock.IMP_DOMINO_HAS_RMF
612 
613 _IMP_pepdock.IMPDOMINO_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
614 IMPDOMINO_SHOW_WARNINGS = _IMP_pepdock.IMPDOMINO_SHOW_WARNINGS
615 import RMF_HDF5
616 import IMP.domino
617 
618 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_ALGEBRA_swigconstant(_IMP_pepdock)
619 IMP_PEPDOCK_HAS_IMP_ALGEBRA = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_ALGEBRA
620 
621 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_ATOM_swigconstant(_IMP_pepdock)
622 IMP_PEPDOCK_HAS_IMP_ATOM = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_ATOM
623 
624 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_CGAL_swigconstant(_IMP_pepdock)
625 IMP_PEPDOCK_HAS_IMP_CGAL = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_CGAL
626 
627 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_DISPLAY_swigconstant(_IMP_pepdock)
628 IMP_PEPDOCK_HAS_IMP_DISPLAY = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_DISPLAY
629 
630 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_KERNEL_swigconstant(_IMP_pepdock)
631 IMP_PEPDOCK_HAS_IMP_KERNEL = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_KERNEL
632 
633 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_RMF_swigconstant(_IMP_pepdock)
634 IMP_PEPDOCK_HAS_IMP_RMF = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_RMF
635 
636 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_pepdock)
637 IMP_PEPDOCK_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_SCORE_FUNCTOR
638 
639 _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_STATISTICS_swigconstant(_IMP_pepdock)
640 IMP_PEPDOCK_HAS_IMP_STATISTICS = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_STATISTICS
641 
642 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_pepdock)
643 IMP_PEPDOCK_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_FILESYSTEM
644 
645 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_GRAPH_swigconstant(_IMP_pepdock)
646 IMP_PEPDOCK_HAS_BOOST_GRAPH = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_GRAPH
647 
648 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_pepdock)
649 IMP_PEPDOCK_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_PROGRAMOPTIONS
650 
651 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_RANDOM_swigconstant(_IMP_pepdock)
652 IMP_PEPDOCK_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_RANDOM
653 
654 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_REGEX_swigconstant(_IMP_pepdock)
655 IMP_PEPDOCK_HAS_BOOST_REGEX = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_REGEX
656 
657 _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_SYSTEM_swigconstant(_IMP_pepdock)
658 IMP_PEPDOCK_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_SYSTEM
659 
660 _IMP_pepdock.IMP_PEPDOCK_HAS_CGAL_swigconstant(_IMP_pepdock)
661 IMP_PEPDOCK_HAS_CGAL = _IMP_pepdock.IMP_PEPDOCK_HAS_CGAL
662 
663 _IMP_pepdock.IMP_PEPDOCK_HAS_HDF5_swigconstant(_IMP_pepdock)
664 IMP_PEPDOCK_HAS_HDF5 = _IMP_pepdock.IMP_PEPDOCK_HAS_HDF5
665 
666 _IMP_pepdock.IMP_PEPDOCK_HAS_RMF_swigconstant(_IMP_pepdock)
667 IMP_PEPDOCK_HAS_RMF = _IMP_pepdock.IMP_PEPDOCK_HAS_RMF
668 
669 _IMP_pepdock.IMPPEPDOCK_SHOW_WARNINGS_swigconstant(_IMP_pepdock)
670 IMPPEPDOCK_SHOW_WARNINGS = _IMP_pepdock.IMPPEPDOCK_SHOW_WARNINGS
671 
672 def get_module_version():
673  """get_module_version() -> std::string const"""
674  return _IMP_pepdock.get_module_version()
675 
676 def get_example_path(fname):
677  """get_example_path(std::string fname) -> std::string"""
678  return _IMP_pepdock.get_example_path(fname)
679 
680 def get_data_path(fname):
681  """get_data_path(std::string fname) -> std::string"""
682  return _IMP_pepdock.get_data_path(fname)
683 from . import _version_check
684 _version_check.check_version(get_module_version())
685 __version__ = get_module_version()
686 
687 
688 
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
Composable functors to implement scores via compile-time composition.
def __init__
Constructor.
Code to compute statistical measures.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
Support for the RMF file format for storing hierarchical molecular data and markup.
Divide-and-conquer inferential optimization in discrete space.