IMP logo
IMP Reference Guide  2.5.0
The Integrative Modeling Platform
gsl/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.5
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2015 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_gsl', [dirname(__file__)])
23  except ImportError:
24  import _IMP_gsl
25  return _IMP_gsl
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_gsl', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_gsl = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_gsl
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_GSL_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_GSL_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_gsl.delete_IMP_GSL_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_GSL_SwigPyIterator self) -> PyObject *"""
125  return _IMP_gsl.IMP_GSL_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
131  incr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
132  """
133  return _IMP_gsl.IMP_GSL_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
139  decr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
140  """
141  return _IMP_gsl.IMP_GSL_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_gsl.IMP_GSL_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
151  return _IMP_gsl.IMP_GSL_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator"""
156  return _IMP_gsl.IMP_GSL_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_GSL_SwigPyIterator self) -> PyObject *"""
161  return _IMP_gsl.IMP_GSL_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_GSL_SwigPyIterator self) -> PyObject *"""
166  return _IMP_gsl.IMP_GSL_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_GSL_SwigPyIterator self) -> PyObject *"""
171  return _IMP_gsl.IMP_GSL_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
176  return _IMP_gsl.IMP_GSL_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
181  return _IMP_gsl.IMP_GSL_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
186  return _IMP_gsl.IMP_GSL_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
191  return _IMP_gsl.IMP_GSL_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
196  return _IMP_gsl.IMP_GSL_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
201  return _IMP_gsl.IMP_GSL_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator
207  __sub__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_gsl.IMP_GSL_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_GSL_SwigPyIterator_swigregister = _IMP_gsl.IMP_GSL_SwigPyIterator_swigregister
214 IMP_GSL_SwigPyIterator_swigregister(IMP_GSL_SwigPyIterator)
215 
216 _value_types=[]
217 _object_types=[]
218 _raii_types=[]
219 _plural_types=[]
220 
221 
222 _IMP_gsl.IMP_DEBUG_swigconstant(_IMP_gsl)
223 IMP_DEBUG = _IMP_gsl.IMP_DEBUG
224 
225 _IMP_gsl.IMP_RELEASE_swigconstant(_IMP_gsl)
226 IMP_RELEASE = _IMP_gsl.IMP_RELEASE
227 
228 _IMP_gsl.IMP_SILENT_swigconstant(_IMP_gsl)
229 IMP_SILENT = _IMP_gsl.IMP_SILENT
230 
231 _IMP_gsl.IMP_PROGRESS_swigconstant(_IMP_gsl)
232 IMP_PROGRESS = _IMP_gsl.IMP_PROGRESS
233 
234 _IMP_gsl.IMP_TERSE_swigconstant(_IMP_gsl)
235 IMP_TERSE = _IMP_gsl.IMP_TERSE
236 
237 _IMP_gsl.IMP_VERBOSE_swigconstant(_IMP_gsl)
238 IMP_VERBOSE = _IMP_gsl.IMP_VERBOSE
239 
240 _IMP_gsl.IMP_MEMORY_swigconstant(_IMP_gsl)
241 IMP_MEMORY = _IMP_gsl.IMP_MEMORY
242 
243 _IMP_gsl.IMP_NONE_swigconstant(_IMP_gsl)
244 IMP_NONE = _IMP_gsl.IMP_NONE
245 
246 _IMP_gsl.IMP_USAGE_swigconstant(_IMP_gsl)
247 IMP_USAGE = _IMP_gsl.IMP_USAGE
248 
249 _IMP_gsl.IMP_INTERNAL_swigconstant(_IMP_gsl)
250 IMP_INTERNAL = _IMP_gsl.IMP_INTERNAL
251 
252 _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_gsl)
253 IMP_KERNEL_HAS_LOG4CXX = _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX
254 
255 _IMP_gsl.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_gsl)
256 IMP_COMPILER_HAS_AUTO = _IMP_gsl.IMP_COMPILER_HAS_AUTO
257 
258 _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_gsl)
259 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR
260 
261 _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
262 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM
263 
264 _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_gsl)
265 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS
266 
267 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_gsl)
268 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
269 
270 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_gsl)
271 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
272 
273 _IMP_gsl.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
274 IMPKERNEL_SHOW_WARNINGS = _IMP_gsl.IMPKERNEL_SHOW_WARNINGS
275 import sys
276 class _DirectorObjects(object):
277  """@internal Simple class to keep references to director objects
278  to prevent premature deletion."""
279  def __init__(self):
280  self._objects = []
281  def register(self, obj):
282  """Take a reference to a director object; will only work for
283  refcounted C++ classes"""
284  if hasattr(obj, 'get_ref_count'):
285  self._objects.append(obj)
286  def cleanup(self):
287  """Only drop our reference and allow cleanup by Python if no other
288  Python references exist (we hold 3 references: one in self._objects,
289  one in x, and one in the argument list for getrefcount) *and* no
290  other C++ references exist (the Python object always holds one)"""
291  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
292  or x.get_ref_count() > 1]
293  # Do in two steps so the references are kept until the end of the
294  # function (deleting references may trigger a fresh call to this method)
295  self._objects = objs
296  def get_object_count(self):
297  """Get number of director objects (useful for testing only)"""
298  return len(self._objects)
299 _director_objects = _DirectorObjects()
300 
301 class _ostream(object):
302  """Proxy of C++ std::ostream class"""
303  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
304 
305  def __init__(self, *args, **kwargs):
306  raise AttributeError("No constructor defined")
307  __repr__ = _swig_repr
308 
309  def write(self, osa_buf):
310  """write(_ostream self, char const * osa_buf)"""
311  return _IMP_gsl._ostream_write(self, osa_buf)
312 
313 _ostream_swigregister = _IMP_gsl._ostream_swigregister
314 _ostream_swigregister(_ostream)
315 
316 
317 _IMP_gsl.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_gsl)
318 IMP_COMPILER_HAS_OVERRIDE = _IMP_gsl.IMP_COMPILER_HAS_OVERRIDE
319 
320 _IMP_gsl.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_gsl)
321 IMP_COMPILER_HAS_FINAL = _IMP_gsl.IMP_COMPILER_HAS_FINAL
322 
323 _IMP_gsl.IMP_HAS_NOEXCEPT_swigconstant(_IMP_gsl)
324 IMP_HAS_NOEXCEPT = _IMP_gsl.IMP_HAS_NOEXCEPT
325 import IMP
326 
327 _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
328 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM
329 
330 _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
331 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
332 
333 _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
334 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM
335 
336 _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
337 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM
338 
339 _IMP_gsl.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
340 IMPCGAL_SHOW_WARNINGS = _IMP_gsl.IMPCGAL_SHOW_WARNINGS
341 import IMP.cgal
342 
343 _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
344 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL
345 
346 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
347 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
348 
349 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
350 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
351 
352 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
353 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM
354 
355 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
356 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM
357 
358 _IMP_gsl.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_gsl)
359 IMP_ALGEBRA_HAS_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_CGAL
360 
361 _IMP_gsl.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_gsl)
362 IMP_ALGEBRA_HAS_ANN = _IMP_gsl.IMP_ALGEBRA_HAS_ANN
363 
364 _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_gsl)
365 IMPALGEBRA_SHOW_WARNINGS = _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS
366 import IMP.algebra
367 
368 _IMP_gsl.IMP_GSL_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
369 IMP_GSL_HAS_IMP_CGAL = _IMP_gsl.IMP_GSL_HAS_IMP_CGAL
370 
371 _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
372 IMP_GSL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM
373 
374 _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
375 IMP_GSL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS
376 
377 _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
378 IMP_GSL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM
379 
380 _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
381 IMP_GSL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM
382 
383 _IMP_gsl.IMP_GSL_HAS_CGAL_swigconstant(_IMP_gsl)
384 IMP_GSL_HAS_CGAL = _IMP_gsl.IMP_GSL_HAS_CGAL
385 
386 _IMP_gsl.IMPGSL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
387 IMPGSL_SHOW_WARNINGS = _IMP_gsl.IMPGSL_SHOW_WARNINGS
388 _object_types.append("GSLOptimizer")
389 
390 
391 def _object_cast_to_GSLOptimizer(o):
392  """_object_cast_to_GSLOptimizer(Object o) -> GSLOptimizer"""
393  return _IMP_gsl._object_cast_to_GSLOptimizer(o)
394 _object_types.append("ConjugateGradients")
395 
396 
397 def _object_cast_to_ConjugateGradients(o):
398  """_object_cast_to_ConjugateGradients(Object o) -> ConjugateGradients"""
399  return _IMP_gsl._object_cast_to_ConjugateGradients(o)
400 _object_types.append("QuasiNewton")
401 
402 
403 def _object_cast_to_QuasiNewton(o):
404  """_object_cast_to_QuasiNewton(Object o) -> QuasiNewton"""
405  return _IMP_gsl._object_cast_to_QuasiNewton(o)
406 _object_types.append("Simplex")
407 
408 
409 def _object_cast_to_Simplex(o):
410  """_object_cast_to_Simplex(Object o) -> Simplex"""
411  return _IMP_gsl._object_cast_to_Simplex(o)
412 class GSLOptimizer(IMP.AttributeOptimizer):
413  """Proxy of C++ IMP::gsl::GSLOptimizer class"""
414  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
415 
416  def __init__(self, m):
417  """__init__(IMP::gsl::GSLOptimizer self, Model m) -> GSLOptimizer"""
418  if self.__class__ == GSLOptimizer:
419  _self = None
420  else:
421  _self = self
422  this = _IMP_gsl.new_GSLOptimizer(_self, m)
423  try:
424  self.this.append(this)
425  except:
426  self.this = this
427  if self.__class__ != GSLOptimizer:
428  _director_objects.register(self)
429 
430 
431 
432  __swig_destroy__ = _IMP_gsl.delete_GSLOptimizer
433  __del__ = lambda self: None
434 
435  def set_stop_score(self, d):
436  """set_stop_score(GSLOptimizer self, double d)"""
437  return _IMP_gsl.GSLOptimizer_set_stop_score(self, d)
438 
439 
440  def __str__(self):
441  """__str__(GSLOptimizer self) -> std::string"""
442  return _IMP_gsl.GSLOptimizer___str__(self)
443 
444 
445  def __repr__(self):
446  """__repr__(GSLOptimizer self) -> std::string"""
447  return _IMP_gsl.GSLOptimizer___repr__(self)
448 
449  def get_from(o):
450  return _object_cast_to_GSLOptimizer(o)
451  get_from = staticmethod(get_from)
452 
453  def get_type_name(self):
454  return self.__class__.__name__
455  def do_show(self, out):
456  pass
457  def get_version_info(self):
458  if"IMP::gsl" == "IMP":
459  return VersionInfo(self.__module__,
460  __import__(self.__module__).get_module_version())
461  else:
462  return IMP.VersionInfo(self.__module__,
463  __import__(self.__module__).get_module_version())
464  def get_from(o):
465  return _object_cast_to_GSLOptimizer(o)
466  get_from = staticmethod(get_from)
467 
468  def __disown__(self):
469  self.this.disown()
470  _IMP_gsl.disown_GSLOptimizer(self)
471  return weakref_proxy(self)
472 
473  def do_destroy(self):
474  """do_destroy(GSLOptimizer self)"""
475  return _IMP_gsl.GSLOptimizer_do_destroy(self)
476 
477 
478  def handle_set_has_required_score_states(self, arg0):
479  """handle_set_has_required_score_states(GSLOptimizer self, bool arg0)"""
480  return _IMP_gsl.GSLOptimizer_handle_set_has_required_score_states(self, arg0)
481 
482 
483  def do_get_inputs(self):
484  """do_get_inputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
485  return _IMP_gsl.GSLOptimizer_do_get_inputs(self)
486 
487 
488  def do_get_outputs(self):
489  """do_get_outputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
490  return _IMP_gsl.GSLOptimizer_do_get_outputs(self)
491 
492 
493  def do_get_interactions(self):
494  """do_get_interactions(GSLOptimizer self) -> IMP::ModelObjectsTemps"""
495  return _IMP_gsl.GSLOptimizer_do_get_interactions(self)
496 
497 
498  def do_optimize(self, ns):
499  """do_optimize(GSLOptimizer self, unsigned int ns) -> double"""
500  return _IMP_gsl.GSLOptimizer_do_optimize(self, ns)
501 
502 GSLOptimizer_swigregister = _IMP_gsl.GSLOptimizer_swigregister
503 GSLOptimizer_swigregister(GSLOptimizer)
504 
505 class ConjugateGradients(GSLOptimizer):
506  """Proxy of C++ IMP::gsl::ConjugateGradients class"""
507  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
508 
509  def __init__(self, m):
510  """__init__(IMP::gsl::ConjugateGradients self, Model m) -> ConjugateGradients"""
511  this = _IMP_gsl.new_ConjugateGradients(m)
512  try:
513  self.this.append(this)
514  except:
515  self.this = this
516 
517  def set_threshold(self, mg):
518  """set_threshold(ConjugateGradients self, double mg)"""
519  return _IMP_gsl.ConjugateGradients_set_threshold(self, mg)
520 
521 
522  def do_optimize(self, max_steps):
523  """do_optimize(ConjugateGradients self, unsigned int max_steps) -> IMP::Float"""
524  return _IMP_gsl.ConjugateGradients_do_optimize(self, max_steps)
525 
526 
527  def get_version_info(self):
528  """get_version_info(ConjugateGradients self) -> VersionInfo"""
529  return _IMP_gsl.ConjugateGradients_get_version_info(self)
530 
531 
532  def __str__(self):
533  """__str__(ConjugateGradients self) -> std::string"""
534  return _IMP_gsl.ConjugateGradients___str__(self)
535 
536 
537  def __repr__(self):
538  """__repr__(ConjugateGradients self) -> std::string"""
539  return _IMP_gsl.ConjugateGradients___repr__(self)
540 
541  def get_from(o):
542  return _object_cast_to_ConjugateGradients(o)
543  get_from = staticmethod(get_from)
544 
545 ConjugateGradients_swigregister = _IMP_gsl.ConjugateGradients_swigregister
546 ConjugateGradients_swigregister(ConjugateGradients)
547 
548 class QuasiNewton(GSLOptimizer):
549  """Proxy of C++ IMP::gsl::QuasiNewton class"""
550  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
551 
552  def __init__(self, m):
553  """__init__(IMP::gsl::QuasiNewton self, Model m) -> QuasiNewton"""
554  this = _IMP_gsl.new_QuasiNewton(m)
555  try:
556  self.this.append(this)
557  except:
558  self.this = this
559 
560  def set_initial_step(self, length):
561  """set_initial_step(QuasiNewton self, double length)"""
562  return _IMP_gsl.QuasiNewton_set_initial_step(self, length)
563 
564 
565  def set_line_step(self, d):
566  """set_line_step(QuasiNewton self, double d)"""
567  return _IMP_gsl.QuasiNewton_set_line_step(self, d)
568 
569 
570  def set_minimum_gradient(self, d):
571  """set_minimum_gradient(QuasiNewton self, double d)"""
572  return _IMP_gsl.QuasiNewton_set_minimum_gradient(self, d)
573 
574 
575  def do_optimize(self, max_steps):
576  """do_optimize(QuasiNewton self, unsigned int max_steps) -> IMP::Float"""
577  return _IMP_gsl.QuasiNewton_do_optimize(self, max_steps)
578 
579 
580  def get_version_info(self):
581  """get_version_info(QuasiNewton self) -> VersionInfo"""
582  return _IMP_gsl.QuasiNewton_get_version_info(self)
583 
584 
585  def __str__(self):
586  """__str__(QuasiNewton self) -> std::string"""
587  return _IMP_gsl.QuasiNewton___str__(self)
588 
589 
590  def __repr__(self):
591  """__repr__(QuasiNewton self) -> std::string"""
592  return _IMP_gsl.QuasiNewton___repr__(self)
593 
594  def get_from(o):
595  return _object_cast_to_QuasiNewton(o)
596  get_from = staticmethod(get_from)
597 
598 QuasiNewton_swigregister = _IMP_gsl.QuasiNewton_swigregister
599 QuasiNewton_swigregister(QuasiNewton)
600 
601 class Simplex(GSLOptimizer):
602  """Proxy of C++ IMP::gsl::Simplex class"""
603  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
604 
605  def __init__(self, m):
606  """__init__(IMP::gsl::Simplex self, Model m) -> Simplex"""
607  this = _IMP_gsl.new_Simplex(m)
608  try:
609  self.this.append(this)
610  except:
611  self.this = this
612 
613  def set_initial_length(self, length):
614  """set_initial_length(Simplex self, double length)"""
615  return _IMP_gsl.Simplex_set_initial_length(self, length)
616 
617 
618  def set_minimum_size(self, d):
619  """set_minimum_size(Simplex self, double d)"""
620  return _IMP_gsl.Simplex_set_minimum_size(self, d)
621 
622 
623  def do_optimize(self, max_steps):
624  """do_optimize(Simplex self, unsigned int max_steps) -> IMP::Float"""
625  return _IMP_gsl.Simplex_do_optimize(self, max_steps)
626 
627 
628  def get_version_info(self):
629  """get_version_info(Simplex self) -> VersionInfo"""
630  return _IMP_gsl.Simplex_get_version_info(self)
631 
632 
633  def __str__(self):
634  """__str__(Simplex self) -> std::string"""
635  return _IMP_gsl.Simplex___str__(self)
636 
637 
638  def __repr__(self):
639  """__repr__(Simplex self) -> std::string"""
640  return _IMP_gsl.Simplex___repr__(self)
641 
642  def get_from(o):
643  return _object_cast_to_Simplex(o)
644  get_from = staticmethod(get_from)
645 
646 Simplex_swigregister = _IMP_gsl.Simplex_swigregister
647 Simplex_swigregister(Simplex)
648 
649 
650 def get_module_version():
651  """get_module_version() -> std::string const"""
652  return _IMP_gsl.get_module_version()
653 
654 def get_example_path(fname):
655  """get_example_path(std::string fname) -> std::string"""
656  return _IMP_gsl.get_example_path(fname)
657 
658 def get_data_path(fname):
659  """get_data_path(std::string fname) -> std::string"""
660  return _IMP_gsl.get_data_path(fname)
661 from . import _version_check
662 _version_check.check_version(get_module_version())
663 __version__ = get_module_version()
664 
665 
666 
Make CGAL functionality available to IMP.
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
virtual void do_destroy()
Definition: Object.h:231
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Version and module information for Objects.
Definition: VersionInfo.h:28
Base class for optimizers that act on individual attributes.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
Definition: Object.h:173
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.