10 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
16 if version_info >= (2, 6, 0):
17 def swig_import_helper():
18 from os.path
import dirname
22 fp, pathname, description = imp.find_module(
'_IMP_gsl', [dirname(__file__)])
28 _mod = imp.load_module(
'_IMP_gsl', fp, pathname, description)
32 _IMP_gsl = swig_import_helper()
33 del swig_import_helper
38 _swig_property = property
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44 if (name ==
"thisown"):
45 return self.this.own(value)
47 if type(value).__name__ ==
'SwigPyObject':
48 self.__dict__[name] = value
50 method = class_type.__swig_setmethods__.get(name,
None)
52 return method(self, value)
54 object.__setattr__(self, name, value)
56 raise AttributeError(
"You cannot add attributes to %s" % self)
59 def _swig_setattr(self, class_type, name, value):
60 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64 if (name ==
"thisown"):
65 return self.this.own()
66 method = class_type.__swig_getmethods__.get(name,
None)
70 return object.__getattr__(self, name)
72 raise AttributeError(name)
74 def _swig_getattr(self, class_type, name):
75 return _swig_getattr_nondynamic(self, class_type, name, 0)
80 strthis =
"proxy of " + self.this.__repr__()
83 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
88 except AttributeError:
95 def _swig_setattr_nondynamic_method(set):
96 def set_attr(self, name, value):
97 if (name ==
"thisown"):
98 return self.this.own(value)
99 if hasattr(self, name)
or (name ==
"this"):
100 set(self, name, value)
102 raise AttributeError(
"You cannot add attributes to %s" % self)
108 weakref_proxy = weakref.proxy
110 weakref_proxy =
lambda x: x
113 class IMP_GSL_SwigPyIterator(object):
114 """Proxy of C++ swig::IMP_GSL_SwigPyIterator class"""
115 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
117 def __init__(self, *args, **kwargs):
118 raise AttributeError(
"No constructor defined - class is abstract")
119 __repr__ = _swig_repr
120 __swig_destroy__ = _IMP_gsl.delete_IMP_GSL_SwigPyIterator
121 __del__ =
lambda self:
None
124 """value(IMP_GSL_SwigPyIterator self) -> PyObject *"""
125 return _IMP_gsl.IMP_GSL_SwigPyIterator_value(self)
130 incr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
131 incr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
133 return _IMP_gsl.IMP_GSL_SwigPyIterator_incr(self, n)
138 decr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
139 decr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
141 return _IMP_gsl.IMP_GSL_SwigPyIterator_decr(self, n)
144 def distance(self, x):
145 """distance(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t"""
146 return _IMP_gsl.IMP_GSL_SwigPyIterator_distance(self, x)
150 """equal(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
151 return _IMP_gsl.IMP_GSL_SwigPyIterator_equal(self, x)
155 """copy(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator"""
156 return _IMP_gsl.IMP_GSL_SwigPyIterator_copy(self)
160 """next(IMP_GSL_SwigPyIterator self) -> PyObject *"""
161 return _IMP_gsl.IMP_GSL_SwigPyIterator_next(self)
165 """__next__(IMP_GSL_SwigPyIterator self) -> PyObject *"""
166 return _IMP_gsl.IMP_GSL_SwigPyIterator___next__(self)
170 """previous(IMP_GSL_SwigPyIterator self) -> PyObject *"""
171 return _IMP_gsl.IMP_GSL_SwigPyIterator_previous(self)
174 def advance(self, n):
175 """advance(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
176 return _IMP_gsl.IMP_GSL_SwigPyIterator_advance(self, n)
180 """__eq__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
181 return _IMP_gsl.IMP_GSL_SwigPyIterator___eq__(self, x)
185 """__ne__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
186 return _IMP_gsl.IMP_GSL_SwigPyIterator___ne__(self, x)
189 def __iadd__(self, n):
190 """__iadd__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
191 return _IMP_gsl.IMP_GSL_SwigPyIterator___iadd__(self, n)
194 def __isub__(self, n):
195 """__isub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
196 return _IMP_gsl.IMP_GSL_SwigPyIterator___isub__(self, n)
199 def __add__(self, n):
200 """__add__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
201 return _IMP_gsl.IMP_GSL_SwigPyIterator___add__(self, n)
204 def __sub__(self, *args):
206 __sub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator
207 __sub__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t
209 return _IMP_gsl.IMP_GSL_SwigPyIterator___sub__(self, *args)
213 IMP_GSL_SwigPyIterator_swigregister = _IMP_gsl.IMP_GSL_SwigPyIterator_swigregister
214 IMP_GSL_SwigPyIterator_swigregister(IMP_GSL_SwigPyIterator)
222 _IMP_gsl.IMP_DEBUG_swigconstant(_IMP_gsl)
223 IMP_DEBUG = _IMP_gsl.IMP_DEBUG
225 _IMP_gsl.IMP_RELEASE_swigconstant(_IMP_gsl)
226 IMP_RELEASE = _IMP_gsl.IMP_RELEASE
228 _IMP_gsl.IMP_SILENT_swigconstant(_IMP_gsl)
229 IMP_SILENT = _IMP_gsl.IMP_SILENT
231 _IMP_gsl.IMP_PROGRESS_swigconstant(_IMP_gsl)
232 IMP_PROGRESS = _IMP_gsl.IMP_PROGRESS
234 _IMP_gsl.IMP_TERSE_swigconstant(_IMP_gsl)
235 IMP_TERSE = _IMP_gsl.IMP_TERSE
237 _IMP_gsl.IMP_VERBOSE_swigconstant(_IMP_gsl)
238 IMP_VERBOSE = _IMP_gsl.IMP_VERBOSE
240 _IMP_gsl.IMP_MEMORY_swigconstant(_IMP_gsl)
241 IMP_MEMORY = _IMP_gsl.IMP_MEMORY
243 _IMP_gsl.IMP_NONE_swigconstant(_IMP_gsl)
244 IMP_NONE = _IMP_gsl.IMP_NONE
246 _IMP_gsl.IMP_USAGE_swigconstant(_IMP_gsl)
247 IMP_USAGE = _IMP_gsl.IMP_USAGE
249 _IMP_gsl.IMP_INTERNAL_swigconstant(_IMP_gsl)
250 IMP_INTERNAL = _IMP_gsl.IMP_INTERNAL
252 _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_gsl)
253 IMP_KERNEL_HAS_LOG4CXX = _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX
255 _IMP_gsl.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_gsl)
256 IMP_COMPILER_HAS_AUTO = _IMP_gsl.IMP_COMPILER_HAS_AUTO
258 _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_gsl)
259 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR
261 _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
262 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM
264 _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_gsl)
265 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS
267 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_gsl)
268 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
270 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_gsl)
271 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
273 _IMP_gsl.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
274 IMPKERNEL_SHOW_WARNINGS = _IMP_gsl.IMPKERNEL_SHOW_WARNINGS
276 class _DirectorObjects(object):
277 """@internal Simple class to keep references to director objects
278 to prevent premature deletion."""
281 def register(self, obj):
282 """Take a reference to a director object; will only work for
283 refcounted C++ classes"""
284 if hasattr(obj,
'get_ref_count'):
285 self._objects.append(obj)
287 """Only drop our reference and allow cleanup by Python if no other
288 Python references exist (we hold 3 references: one in self._objects,
289 one in x, and one in the argument list for getrefcount) *and* no
290 other C++ references exist (the Python object always holds one)"""
291 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
292 or x.get_ref_count() > 1]
296 def get_object_count(self):
297 """Get number of director objects (useful for testing only)"""
298 return len(self._objects)
299 _director_objects = _DirectorObjects()
301 class _ostream(object):
302 """Proxy of C++ std::ostream class"""
303 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
305 def __init__(self, *args, **kwargs):
306 raise AttributeError(
"No constructor defined")
307 __repr__ = _swig_repr
309 def write(self, osa_buf):
310 """write(_ostream self, char const * osa_buf)"""
311 return _IMP_gsl._ostream_write(self, osa_buf)
313 _ostream_swigregister = _IMP_gsl._ostream_swigregister
314 _ostream_swigregister(_ostream)
317 _IMP_gsl.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_gsl)
318 IMP_COMPILER_HAS_OVERRIDE = _IMP_gsl.IMP_COMPILER_HAS_OVERRIDE
320 _IMP_gsl.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_gsl)
321 IMP_COMPILER_HAS_FINAL = _IMP_gsl.IMP_COMPILER_HAS_FINAL
323 _IMP_gsl.IMP_HAS_NOEXCEPT_swigconstant(_IMP_gsl)
324 IMP_HAS_NOEXCEPT = _IMP_gsl.IMP_HAS_NOEXCEPT
327 _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
328 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM
330 _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
331 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
333 _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
334 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM
336 _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
337 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM
339 _IMP_gsl.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
340 IMPCGAL_SHOW_WARNINGS = _IMP_gsl.IMPCGAL_SHOW_WARNINGS
343 _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
344 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL
346 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
347 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
349 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
350 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
352 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
353 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM
355 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
356 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM
358 _IMP_gsl.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_gsl)
359 IMP_ALGEBRA_HAS_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_CGAL
361 _IMP_gsl.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_gsl)
362 IMP_ALGEBRA_HAS_ANN = _IMP_gsl.IMP_ALGEBRA_HAS_ANN
364 _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_gsl)
365 IMPALGEBRA_SHOW_WARNINGS = _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS
368 _IMP_gsl.IMP_GSL_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
369 IMP_GSL_HAS_IMP_CGAL = _IMP_gsl.IMP_GSL_HAS_IMP_CGAL
371 _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
372 IMP_GSL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM
374 _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
375 IMP_GSL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS
377 _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
378 IMP_GSL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM
380 _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
381 IMP_GSL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM
383 _IMP_gsl.IMP_GSL_HAS_CGAL_swigconstant(_IMP_gsl)
384 IMP_GSL_HAS_CGAL = _IMP_gsl.IMP_GSL_HAS_CGAL
386 _IMP_gsl.IMPGSL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
387 IMPGSL_SHOW_WARNINGS = _IMP_gsl.IMPGSL_SHOW_WARNINGS
388 _object_types.append(
"GSLOptimizer")
391 def _object_cast_to_GSLOptimizer(o):
392 """_object_cast_to_GSLOptimizer(Object o) -> GSLOptimizer"""
393 return _IMP_gsl._object_cast_to_GSLOptimizer(o)
394 _object_types.append(
"ConjugateGradients")
397 def _object_cast_to_ConjugateGradients(o):
398 """_object_cast_to_ConjugateGradients(Object o) -> ConjugateGradients"""
399 return _IMP_gsl._object_cast_to_ConjugateGradients(o)
400 _object_types.append(
"QuasiNewton")
403 def _object_cast_to_QuasiNewton(o):
404 """_object_cast_to_QuasiNewton(Object o) -> QuasiNewton"""
405 return _IMP_gsl._object_cast_to_QuasiNewton(o)
406 _object_types.append(
"Simplex")
409 def _object_cast_to_Simplex(o):
410 """_object_cast_to_Simplex(Object o) -> Simplex"""
411 return _IMP_gsl._object_cast_to_Simplex(o)
413 """Proxy of C++ IMP::gsl::GSLOptimizer class"""
414 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
416 def __init__(self, m):
417 """__init__(IMP::gsl::GSLOptimizer self, Model m) -> GSLOptimizer"""
418 if self.__class__ == GSLOptimizer:
422 this = _IMP_gsl.new_GSLOptimizer(_self, m)
424 self.this.append(this)
427 if self.__class__ != GSLOptimizer:
428 _director_objects.register(self)
432 __swig_destroy__ = _IMP_gsl.delete_GSLOptimizer
433 __del__ =
lambda self:
None
435 def set_stop_score(self, d):
436 """set_stop_score(GSLOptimizer self, double d)"""
437 return _IMP_gsl.GSLOptimizer_set_stop_score(self, d)
441 """__str__(GSLOptimizer self) -> std::string"""
442 return _IMP_gsl.GSLOptimizer___str__(self)
446 """__repr__(GSLOptimizer self) -> std::string"""
447 return _IMP_gsl.GSLOptimizer___repr__(self)
450 return _object_cast_to_GSLOptimizer(o)
451 get_from = staticmethod(get_from)
453 def get_type_name(self):
454 return self.__class__.__name__
455 def do_show(self, out):
458 if"IMP::gsl" ==
"IMP":
459 return VersionInfo(self.__module__,
460 __import__(self.__module__).get_module_version())
463 __import__(self.__module__).get_module_version())
465 return _object_cast_to_GSLOptimizer(o)
466 get_from = staticmethod(get_from)
468 def __disown__(self):
470 _IMP_gsl.disown_GSLOptimizer(self)
471 return weakref_proxy(self)
474 """do_destroy(GSLOptimizer self)"""
475 return _IMP_gsl.GSLOptimizer_do_destroy(self)
478 def handle_set_has_required_score_states(self, arg0):
479 """handle_set_has_required_score_states(GSLOptimizer self, bool arg0)"""
480 return _IMP_gsl.GSLOptimizer_handle_set_has_required_score_states(self, arg0)
484 """do_get_inputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
485 return _IMP_gsl.GSLOptimizer_do_get_inputs(self)
489 """do_get_outputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
490 return _IMP_gsl.GSLOptimizer_do_get_outputs(self)
493 def do_get_interactions(self):
494 """do_get_interactions(GSLOptimizer self) -> IMP::ModelObjectsTemps"""
495 return _IMP_gsl.GSLOptimizer_do_get_interactions(self)
498 def do_optimize(self, ns):
499 """do_optimize(GSLOptimizer self, unsigned int ns) -> double"""
500 return _IMP_gsl.GSLOptimizer_do_optimize(self, ns)
502 GSLOptimizer_swigregister = _IMP_gsl.GSLOptimizer_swigregister
503 GSLOptimizer_swigregister(GSLOptimizer)
505 class ConjugateGradients(GSLOptimizer):
506 """Proxy of C++ IMP::gsl::ConjugateGradients class"""
507 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
509 def __init__(self, m):
510 """__init__(IMP::gsl::ConjugateGradients self, Model m) -> ConjugateGradients"""
511 this = _IMP_gsl.new_ConjugateGradients(m)
513 self.this.append(this)
517 def set_threshold(self, mg):
518 """set_threshold(ConjugateGradients self, double mg)"""
519 return _IMP_gsl.ConjugateGradients_set_threshold(self, mg)
522 def do_optimize(self, max_steps):
523 """do_optimize(ConjugateGradients self, unsigned int max_steps) -> IMP::Float"""
524 return _IMP_gsl.ConjugateGradients_do_optimize(self, max_steps)
528 """get_version_info(ConjugateGradients self) -> VersionInfo"""
529 return _IMP_gsl.ConjugateGradients_get_version_info(self)
533 """__str__(ConjugateGradients self) -> std::string"""
534 return _IMP_gsl.ConjugateGradients___str__(self)
538 """__repr__(ConjugateGradients self) -> std::string"""
539 return _IMP_gsl.ConjugateGradients___repr__(self)
542 return _object_cast_to_ConjugateGradients(o)
543 get_from = staticmethod(get_from)
545 ConjugateGradients_swigregister = _IMP_gsl.ConjugateGradients_swigregister
546 ConjugateGradients_swigregister(ConjugateGradients)
548 class QuasiNewton(GSLOptimizer):
549 """Proxy of C++ IMP::gsl::QuasiNewton class"""
550 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
552 def __init__(self, m):
553 """__init__(IMP::gsl::QuasiNewton self, Model m) -> QuasiNewton"""
554 this = _IMP_gsl.new_QuasiNewton(m)
556 self.this.append(this)
560 def set_initial_step(self, length):
561 """set_initial_step(QuasiNewton self, double length)"""
562 return _IMP_gsl.QuasiNewton_set_initial_step(self, length)
565 def set_line_step(self, d):
566 """set_line_step(QuasiNewton self, double d)"""
567 return _IMP_gsl.QuasiNewton_set_line_step(self, d)
570 def set_minimum_gradient(self, d):
571 """set_minimum_gradient(QuasiNewton self, double d)"""
572 return _IMP_gsl.QuasiNewton_set_minimum_gradient(self, d)
575 def do_optimize(self, max_steps):
576 """do_optimize(QuasiNewton self, unsigned int max_steps) -> IMP::Float"""
577 return _IMP_gsl.QuasiNewton_do_optimize(self, max_steps)
581 """get_version_info(QuasiNewton self) -> VersionInfo"""
582 return _IMP_gsl.QuasiNewton_get_version_info(self)
586 """__str__(QuasiNewton self) -> std::string"""
587 return _IMP_gsl.QuasiNewton___str__(self)
591 """__repr__(QuasiNewton self) -> std::string"""
592 return _IMP_gsl.QuasiNewton___repr__(self)
595 return _object_cast_to_QuasiNewton(o)
596 get_from = staticmethod(get_from)
598 QuasiNewton_swigregister = _IMP_gsl.QuasiNewton_swigregister
599 QuasiNewton_swigregister(QuasiNewton)
601 class Simplex(GSLOptimizer):
602 """Proxy of C++ IMP::gsl::Simplex class"""
603 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
605 def __init__(self, m):
606 """__init__(IMP::gsl::Simplex self, Model m) -> Simplex"""
607 this = _IMP_gsl.new_Simplex(m)
609 self.this.append(this)
613 def set_initial_length(self, length):
614 """set_initial_length(Simplex self, double length)"""
615 return _IMP_gsl.Simplex_set_initial_length(self, length)
618 def set_minimum_size(self, d):
619 """set_minimum_size(Simplex self, double d)"""
620 return _IMP_gsl.Simplex_set_minimum_size(self, d)
623 def do_optimize(self, max_steps):
624 """do_optimize(Simplex self, unsigned int max_steps) -> IMP::Float"""
625 return _IMP_gsl.Simplex_do_optimize(self, max_steps)
629 """get_version_info(Simplex self) -> VersionInfo"""
630 return _IMP_gsl.Simplex_get_version_info(self)
634 """__str__(Simplex self) -> std::string"""
635 return _IMP_gsl.Simplex___str__(self)
639 """__repr__(Simplex self) -> std::string"""
640 return _IMP_gsl.Simplex___repr__(self)
643 return _object_cast_to_Simplex(o)
644 get_from = staticmethod(get_from)
646 Simplex_swigregister = _IMP_gsl.Simplex_swigregister
647 Simplex_swigregister(Simplex)
650 def get_module_version():
651 """get_module_version() -> std::string const"""
652 return _IMP_gsl.get_module_version()
655 """get_example_path(std::string fname) -> std::string"""
656 return _IMP_gsl.get_example_path(fname)
659 """get_data_path(std::string fname) -> std::string"""
660 return _IMP_gsl.get_data_path(fname)
661 from .
import _version_check
662 _version_check.check_version(get_module_version())
663 __version__ = get_module_version()
Make CGAL functionality available to IMP.
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
virtual void do_destroy()
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Version and module information for Objects.
Base class for optimizers that act on individual attributes.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.