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IMP Reference Guide  2.5.0
The Integrative Modeling Platform
cnmultifit/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.5
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2015 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_cnmultifit', [dirname(__file__)])
23  except ImportError:
24  import _IMP_cnmultifit
25  return _IMP_cnmultifit
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_cnmultifit', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_cnmultifit = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_cnmultifit
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_CNMULTIFIT_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_CNMULTIFIT_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_cnmultifit.delete_IMP_CNMULTIFIT_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_CNMULTIFIT_SwigPyIterator self) -> PyObject *"""
125  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_CNMULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_CNMULTIFIT_SwigPyIterator
131  incr(IMP_CNMULTIFIT_SwigPyIterator self) -> IMP_CNMULTIFIT_SwigPyIterator
132  """
133  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_CNMULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_CNMULTIFIT_SwigPyIterator
139  decr(IMP_CNMULTIFIT_SwigPyIterator self) -> IMP_CNMULTIFIT_SwigPyIterator
140  """
141  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> bool"""
151  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_CNMULTIFIT_SwigPyIterator self) -> IMP_CNMULTIFIT_SwigPyIterator"""
156  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_CNMULTIFIT_SwigPyIterator self) -> PyObject *"""
161  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_CNMULTIFIT_SwigPyIterator self) -> PyObject *"""
166  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_CNMULTIFIT_SwigPyIterator self) -> PyObject *"""
171  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator"""
176  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> bool"""
181  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> bool"""
186  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator"""
191  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator"""
196  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator"""
201  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator
207  __sub__(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_CNMULTIFIT_SwigPyIterator_swigregister = _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_swigregister
214 IMP_CNMULTIFIT_SwigPyIterator_swigregister(IMP_CNMULTIFIT_SwigPyIterator)
215 
216 _value_types=[]
217 _object_types=[]
218 _raii_types=[]
219 _plural_types=[]
220 
221 
222 _IMP_cnmultifit.IMP_DEBUG_swigconstant(_IMP_cnmultifit)
223 IMP_DEBUG = _IMP_cnmultifit.IMP_DEBUG
224 
225 _IMP_cnmultifit.IMP_RELEASE_swigconstant(_IMP_cnmultifit)
226 IMP_RELEASE = _IMP_cnmultifit.IMP_RELEASE
227 
228 _IMP_cnmultifit.IMP_SILENT_swigconstant(_IMP_cnmultifit)
229 IMP_SILENT = _IMP_cnmultifit.IMP_SILENT
230 
231 _IMP_cnmultifit.IMP_PROGRESS_swigconstant(_IMP_cnmultifit)
232 IMP_PROGRESS = _IMP_cnmultifit.IMP_PROGRESS
233 
234 _IMP_cnmultifit.IMP_TERSE_swigconstant(_IMP_cnmultifit)
235 IMP_TERSE = _IMP_cnmultifit.IMP_TERSE
236 
237 _IMP_cnmultifit.IMP_VERBOSE_swigconstant(_IMP_cnmultifit)
238 IMP_VERBOSE = _IMP_cnmultifit.IMP_VERBOSE
239 
240 _IMP_cnmultifit.IMP_MEMORY_swigconstant(_IMP_cnmultifit)
241 IMP_MEMORY = _IMP_cnmultifit.IMP_MEMORY
242 
243 _IMP_cnmultifit.IMP_NONE_swigconstant(_IMP_cnmultifit)
244 IMP_NONE = _IMP_cnmultifit.IMP_NONE
245 
246 _IMP_cnmultifit.IMP_USAGE_swigconstant(_IMP_cnmultifit)
247 IMP_USAGE = _IMP_cnmultifit.IMP_USAGE
248 
249 _IMP_cnmultifit.IMP_INTERNAL_swigconstant(_IMP_cnmultifit)
250 IMP_INTERNAL = _IMP_cnmultifit.IMP_INTERNAL
251 
252 _IMP_cnmultifit.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_cnmultifit)
253 IMP_KERNEL_HAS_LOG4CXX = _IMP_cnmultifit.IMP_KERNEL_HAS_LOG4CXX
254 
255 _IMP_cnmultifit.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_cnmultifit)
256 IMP_COMPILER_HAS_AUTO = _IMP_cnmultifit.IMP_COMPILER_HAS_AUTO
257 
258 _IMP_cnmultifit.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_cnmultifit)
259 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_cnmultifit.IMP_COMPILER_HAS_DEBUG_VECTOR
260 
261 _IMP_cnmultifit.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
262 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_KERNEL_HAS_BOOST_RANDOM
263 
264 _IMP_cnmultifit.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_cnmultifit)
265 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_cnmultifit.IMP_KERNEL_HAS_GPERFTOOLS
266 
267 _IMP_cnmultifit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_cnmultifit)
268 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_cnmultifit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
269 
270 _IMP_cnmultifit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_cnmultifit)
271 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_cnmultifit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
272 
273 _IMP_cnmultifit.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
274 IMPKERNEL_SHOW_WARNINGS = _IMP_cnmultifit.IMPKERNEL_SHOW_WARNINGS
275 import sys
276 class _DirectorObjects(object):
277  """@internal Simple class to keep references to director objects
278  to prevent premature deletion."""
279  def __init__(self):
280  self._objects = []
281  def register(self, obj):
282  """Take a reference to a director object; will only work for
283  refcounted C++ classes"""
284  if hasattr(obj, 'get_ref_count'):
285  self._objects.append(obj)
286  def cleanup(self):
287  """Only drop our reference and allow cleanup by Python if no other
288  Python references exist (we hold 3 references: one in self._objects,
289  one in x, and one in the argument list for getrefcount) *and* no
290  other C++ references exist (the Python object always holds one)"""
291  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
292  or x.get_ref_count() > 1]
293  # Do in two steps so the references are kept until the end of the
294  # function (deleting references may trigger a fresh call to this method)
295  self._objects = objs
296  def get_object_count(self):
297  """Get number of director objects (useful for testing only)"""
298  return len(self._objects)
299 _director_objects = _DirectorObjects()
300 
301 class _ostream(object):
302  """Proxy of C++ std::ostream class"""
303  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
304 
305  def __init__(self, *args, **kwargs):
306  raise AttributeError("No constructor defined")
307  __repr__ = _swig_repr
308 
309  def write(self, osa_buf):
310  """write(_ostream self, char const * osa_buf)"""
311  return _IMP_cnmultifit._ostream_write(self, osa_buf)
312 
313 _ostream_swigregister = _IMP_cnmultifit._ostream_swigregister
314 _ostream_swigregister(_ostream)
315 
316 
317 _IMP_cnmultifit.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_cnmultifit)
318 IMP_COMPILER_HAS_OVERRIDE = _IMP_cnmultifit.IMP_COMPILER_HAS_OVERRIDE
319 
320 _IMP_cnmultifit.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_cnmultifit)
321 IMP_COMPILER_HAS_FINAL = _IMP_cnmultifit.IMP_COMPILER_HAS_FINAL
322 
323 _IMP_cnmultifit.IMP_HAS_NOEXCEPT_swigconstant(_IMP_cnmultifit)
324 IMP_HAS_NOEXCEPT = _IMP_cnmultifit.IMP_HAS_NOEXCEPT
325 import IMP
326 
327 _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
328 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_FILESYSTEM
329 
330 _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
331 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
332 
333 _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
334 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_RANDOM
335 
336 _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
337 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_SYSTEM
338 
339 _IMP_cnmultifit.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
340 IMPCGAL_SHOW_WARNINGS = _IMP_cnmultifit.IMPCGAL_SHOW_WARNINGS
341 import IMP.cgal
342 
343 _IMP_cnmultifit.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
344 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_ALGEBRA_HAS_IMP_CGAL
345 
346 _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
347 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
348 
349 _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
350 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
351 
352 _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
353 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_RANDOM
354 
355 _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
356 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_SYSTEM
357 
358 _IMP_cnmultifit.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_cnmultifit)
359 IMP_ALGEBRA_HAS_CGAL = _IMP_cnmultifit.IMP_ALGEBRA_HAS_CGAL
360 
361 _IMP_cnmultifit.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_cnmultifit)
362 IMP_ALGEBRA_HAS_ANN = _IMP_cnmultifit.IMP_ALGEBRA_HAS_ANN
363 
364 _IMP_cnmultifit.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
365 IMPALGEBRA_SHOW_WARNINGS = _IMP_cnmultifit.IMPALGEBRA_SHOW_WARNINGS
366 import IMP.algebra
367 
368 _IMP_cnmultifit.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
369 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_DISPLAY_HAS_IMP_CGAL
370 
371 _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
372 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
373 
374 _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
375 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
376 
377 _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
378 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_RANDOM
379 
380 _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
381 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_SYSTEM
382 
383 _IMP_cnmultifit.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_cnmultifit)
384 IMP_DISPLAY_HAS_CGAL = _IMP_cnmultifit.IMP_DISPLAY_HAS_CGAL
385 
386 _IMP_cnmultifit.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
387 IMPDISPLAY_SHOW_WARNINGS = _IMP_cnmultifit.IMPDISPLAY_SHOW_WARNINGS
388 import IMP.display
389 
390 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
391 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
392 
393 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
394 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
395 
396 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
397 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
398 
399 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
400 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
401 
402 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
403 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
404 
405 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_cnmultifit)
406 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_CGAL
407 
408 _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_cnmultifit)
409 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_HDF5
410 
411 _IMP_cnmultifit.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
412 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_cnmultifit.IMPSCOREFUNCTOR_SHOW_WARNINGS
413 import IMP.score_functor
414 
415 _IMP_cnmultifit.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
416 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_STATISTICS_HAS_IMP_CGAL
417 
418 _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
419 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
420 
421 _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
422 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
423 
424 _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
425 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_RANDOM
426 
427 _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
428 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_SYSTEM
429 
430 _IMP_cnmultifit.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_cnmultifit)
431 IMP_STATISTICS_HAS_CGAL = _IMP_cnmultifit.IMP_STATISTICS_HAS_CGAL
432 
433 _IMP_cnmultifit.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
434 IMPSTATISTICS_SHOW_WARNINGS = _IMP_cnmultifit.IMPSTATISTICS_SHOW_WARNINGS
435 import IMP.statistics
436 
437 _IMP_cnmultifit.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
438 IMP_CORE_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_CORE_HAS_IMP_CGAL
439 
440 _IMP_cnmultifit.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
441 IMP_CORE_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_CORE_HAS_IMP_KERNEL
442 
443 _IMP_cnmultifit.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
444 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_CORE_HAS_BOOST_FILESYSTEM
445 
446 _IMP_cnmultifit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
447 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
448 
449 _IMP_cnmultifit.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
450 IMP_CORE_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_CORE_HAS_BOOST_RANDOM
451 
452 _IMP_cnmultifit.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
453 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_CORE_HAS_BOOST_SYSTEM
454 
455 _IMP_cnmultifit.IMP_CORE_HAS_CGAL_swigconstant(_IMP_cnmultifit)
456 IMP_CORE_HAS_CGAL = _IMP_cnmultifit.IMP_CORE_HAS_CGAL
457 
458 _IMP_cnmultifit.IMP_CORE_HAS_HDF5_swigconstant(_IMP_cnmultifit)
459 IMP_CORE_HAS_HDF5 = _IMP_cnmultifit.IMP_CORE_HAS_HDF5
460 
461 _IMP_cnmultifit.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
462 IMPCORE_SHOW_WARNINGS = _IMP_cnmultifit.IMPCORE_SHOW_WARNINGS
463 import IMP.core
464 
465 _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_cnmultifit)
466 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_ALGEBRA
467 
468 _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
469 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_CGAL
470 
471 _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_cnmultifit)
472 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_DISPLAY
473 
474 _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
475 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_KERNEL
476 
477 _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
478 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
479 
480 _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
481 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
482 
483 _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
484 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
485 
486 _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
487 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_RANDOM
488 
489 _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
490 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_SYSTEM
491 
492 _IMP_cnmultifit.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_cnmultifit)
493 IMP_CONTAINER_HAS_CGAL = _IMP_cnmultifit.IMP_CONTAINER_HAS_CGAL
494 
495 _IMP_cnmultifit.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_cnmultifit)
496 IMP_CONTAINER_HAS_HDF5 = _IMP_cnmultifit.IMP_CONTAINER_HAS_HDF5
497 
498 _IMP_cnmultifit.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
499 IMPCONTAINER_SHOW_WARNINGS = _IMP_cnmultifit.IMPCONTAINER_SHOW_WARNINGS
500 import IMP.container
501 
502 _IMP_cnmultifit.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
503 IMP_ATOM_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_ATOM_HAS_IMP_CGAL
504 
505 _IMP_cnmultifit.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
506 IMP_ATOM_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_ATOM_HAS_IMP_KERNEL
507 
508 _IMP_cnmultifit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
509 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
510 
511 _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
512 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
513 
514 _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
515 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_RANDOM
516 
517 _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
518 IMP_ATOM_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_REGEX
519 
520 _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
521 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_SYSTEM
522 
523 _IMP_cnmultifit.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_cnmultifit)
524 IMP_ATOM_HAS_CGAL = _IMP_cnmultifit.IMP_ATOM_HAS_CGAL
525 
526 _IMP_cnmultifit.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_cnmultifit)
527 IMP_ATOM_HAS_HDF5 = _IMP_cnmultifit.IMP_ATOM_HAS_HDF5
528 
529 _IMP_cnmultifit.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
530 IMPATOM_SHOW_WARNINGS = _IMP_cnmultifit.IMPATOM_SHOW_WARNINGS
531 
532 _IMP_cnmultifit.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_cnmultifit)
533 IMP_ATOM_TYPE_INDEX = _IMP_cnmultifit.IMP_ATOM_TYPE_INDEX
534 
535 _IMP_cnmultifit.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_cnmultifit)
536 IMP_RESIDUE_TYPE_INDEX = _IMP_cnmultifit.IMP_RESIDUE_TYPE_INDEX
537 
538 _IMP_cnmultifit.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_cnmultifit)
539 IMP_HIERARCHY_TYPE_INDEX = _IMP_cnmultifit.IMP_HIERARCHY_TYPE_INDEX
540 import IMP.atom
541 
542 _IMP_cnmultifit.IMP_EM_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
543 IMP_EM_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_EM_HAS_IMP_CGAL
544 
545 _IMP_cnmultifit.IMP_EM_HAS_IMP_CONTAINER_swigconstant(_IMP_cnmultifit)
546 IMP_EM_HAS_IMP_CONTAINER = _IMP_cnmultifit.IMP_EM_HAS_IMP_CONTAINER
547 
548 _IMP_cnmultifit.IMP_EM_HAS_IMP_DISPLAY_swigconstant(_IMP_cnmultifit)
549 IMP_EM_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_EM_HAS_IMP_DISPLAY
550 
551 _IMP_cnmultifit.IMP_EM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
552 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_EM_HAS_IMP_SCORE_FUNCTOR
553 
554 _IMP_cnmultifit.IMP_EM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
555 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_EM_HAS_BOOST_FILESYSTEM
556 
557 _IMP_cnmultifit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
558 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
559 
560 _IMP_cnmultifit.IMP_EM_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
561 IMP_EM_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_EM_HAS_BOOST_RANDOM
562 
563 _IMP_cnmultifit.IMP_EM_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
564 IMP_EM_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_EM_HAS_BOOST_REGEX
565 
566 _IMP_cnmultifit.IMP_EM_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
567 IMP_EM_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_EM_HAS_BOOST_SYSTEM
568 
569 _IMP_cnmultifit.IMP_EM_HAS_CGAL_swigconstant(_IMP_cnmultifit)
570 IMP_EM_HAS_CGAL = _IMP_cnmultifit.IMP_EM_HAS_CGAL
571 
572 _IMP_cnmultifit.IMP_EM_HAS_HDF5_swigconstant(_IMP_cnmultifit)
573 IMP_EM_HAS_HDF5 = _IMP_cnmultifit.IMP_EM_HAS_HDF5
574 
575 _IMP_cnmultifit.IMPEM_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
576 IMPEM_SHOW_WARNINGS = _IMP_cnmultifit.IMPEM_SHOW_WARNINGS
577 import IMP.em
578 
579 _IMP_cnmultifit.IMP_RMF_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
580 IMP_RMF_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_RMF_HAS_IMP_CGAL
581 
582 _IMP_cnmultifit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
583 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
584 
585 _IMP_cnmultifit.IMP_RMF_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
586 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_FILESYSTEM
587 
588 _IMP_cnmultifit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
589 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
590 
591 _IMP_cnmultifit.IMP_RMF_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
592 IMP_RMF_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_RANDOM
593 
594 _IMP_cnmultifit.IMP_RMF_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
595 IMP_RMF_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_REGEX
596 
597 _IMP_cnmultifit.IMP_RMF_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
598 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_SYSTEM
599 
600 _IMP_cnmultifit.IMP_RMF_HAS_CGAL_swigconstant(_IMP_cnmultifit)
601 IMP_RMF_HAS_CGAL = _IMP_cnmultifit.IMP_RMF_HAS_CGAL
602 
603 _IMP_cnmultifit.IMP_RMF_HAS_HDF5_swigconstant(_IMP_cnmultifit)
604 IMP_RMF_HAS_HDF5 = _IMP_cnmultifit.IMP_RMF_HAS_HDF5
605 
606 _IMP_cnmultifit.IMPRMF_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
607 IMPRMF_SHOW_WARNINGS = _IMP_cnmultifit.IMPRMF_SHOW_WARNINGS
608 import IMP.rmf
609 import RMF
610 
611 _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_ATOM_swigconstant(_IMP_cnmultifit)
612 IMP_DOMINO_HAS_IMP_ATOM = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_ATOM
613 
614 _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
615 IMP_DOMINO_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_CGAL
616 
617 _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
618 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_KERNEL
619 
620 _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_RMF_swigconstant(_IMP_cnmultifit)
621 IMP_DOMINO_HAS_IMP_RMF = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_RMF
622 
623 _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
624 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
625 
626 _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_cnmultifit)
627 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_FILESYSTEM
628 
629 _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_cnmultifit)
630 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
631 
632 _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
633 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_RANDOM
634 
635 _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
636 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_REGEX
637 
638 _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
639 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_SYSTEM
640 
641 _IMP_cnmultifit.IMP_DOMINO_HAS_CGAL_swigconstant(_IMP_cnmultifit)
642 IMP_DOMINO_HAS_CGAL = _IMP_cnmultifit.IMP_DOMINO_HAS_CGAL
643 
644 _IMP_cnmultifit.IMP_DOMINO_HAS_HDF5_swigconstant(_IMP_cnmultifit)
645 IMP_DOMINO_HAS_HDF5 = _IMP_cnmultifit.IMP_DOMINO_HAS_HDF5
646 
647 _IMP_cnmultifit.IMP_DOMINO_HAS_RMF_swigconstant(_IMP_cnmultifit)
648 IMP_DOMINO_HAS_RMF = _IMP_cnmultifit.IMP_DOMINO_HAS_RMF
649 
650 _IMP_cnmultifit.IMPDOMINO_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
651 IMPDOMINO_SHOW_WARNINGS = _IMP_cnmultifit.IMPDOMINO_SHOW_WARNINGS
652 import RMF_HDF5
653 import IMP.domino
654 
655 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
656 IMP_MULTIFIT_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_CGAL
657 
658 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_CONTAINER_swigconstant(_IMP_cnmultifit)
659 IMP_MULTIFIT_HAS_IMP_CONTAINER = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_CONTAINER
660 
661 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_DISPLAY_swigconstant(_IMP_cnmultifit)
662 IMP_MULTIFIT_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_DISPLAY
663 
664 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
665 IMP_MULTIFIT_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_KERNEL
666 
667 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_RMF_swigconstant(_IMP_cnmultifit)
668 IMP_MULTIFIT_HAS_IMP_RMF = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_RMF
669 
670 _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
671 IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR
672 
673 _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_GRAPH_swigconstant(_IMP_cnmultifit)
674 IMP_MULTIFIT_HAS_BOOST_GRAPH = _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_GRAPH
675 
676 _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
677 IMP_MULTIFIT_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_RANDOM
678 
679 _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
680 IMP_MULTIFIT_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_REGEX
681 
682 _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
683 IMP_MULTIFIT_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_SYSTEM
684 
685 _IMP_cnmultifit.IMP_MULTIFIT_HAS_CGAL_swigconstant(_IMP_cnmultifit)
686 IMP_MULTIFIT_HAS_CGAL = _IMP_cnmultifit.IMP_MULTIFIT_HAS_CGAL
687 
688 _IMP_cnmultifit.IMP_MULTIFIT_HAS_HDF5_swigconstant(_IMP_cnmultifit)
689 IMP_MULTIFIT_HAS_HDF5 = _IMP_cnmultifit.IMP_MULTIFIT_HAS_HDF5
690 
691 _IMP_cnmultifit.IMP_MULTIFIT_HAS_RMF_swigconstant(_IMP_cnmultifit)
692 IMP_MULTIFIT_HAS_RMF = _IMP_cnmultifit.IMP_MULTIFIT_HAS_RMF
693 
694 _IMP_cnmultifit.IMPMULTIFIT_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
695 IMPMULTIFIT_SHOW_WARNINGS = _IMP_cnmultifit.IMPMULTIFIT_SHOW_WARNINGS
696 import IMP.multifit
697 
698 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_CGAL_swigconstant(_IMP_cnmultifit)
699 IMP_CNMULTIFIT_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_CGAL
700 
701 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_CONTAINER_swigconstant(_IMP_cnmultifit)
702 IMP_CNMULTIFIT_HAS_IMP_CONTAINER = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_CONTAINER
703 
704 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_DISPLAY_swigconstant(_IMP_cnmultifit)
705 IMP_CNMULTIFIT_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_DISPLAY
706 
707 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_DOMINO_swigconstant(_IMP_cnmultifit)
708 IMP_CNMULTIFIT_HAS_IMP_DOMINO = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_DOMINO
709 
710 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_KERNEL_swigconstant(_IMP_cnmultifit)
711 IMP_CNMULTIFIT_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_KERNEL
712 
713 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_RMF_swigconstant(_IMP_cnmultifit)
714 IMP_CNMULTIFIT_HAS_IMP_RMF = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_RMF
715 
716 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_cnmultifit)
717 IMP_CNMULTIFIT_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_SCORE_FUNCTOR
718 
719 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_GRAPH_swigconstant(_IMP_cnmultifit)
720 IMP_CNMULTIFIT_HAS_BOOST_GRAPH = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_GRAPH
721 
722 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_RANDOM_swigconstant(_IMP_cnmultifit)
723 IMP_CNMULTIFIT_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_RANDOM
724 
725 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_REGEX_swigconstant(_IMP_cnmultifit)
726 IMP_CNMULTIFIT_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_REGEX
727 
728 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_SYSTEM_swigconstant(_IMP_cnmultifit)
729 IMP_CNMULTIFIT_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_SYSTEM
730 
731 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_CGAL_swigconstant(_IMP_cnmultifit)
732 IMP_CNMULTIFIT_HAS_CGAL = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_CGAL
733 
734 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_FFTW3_swigconstant(_IMP_cnmultifit)
735 IMP_CNMULTIFIT_HAS_FFTW3 = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_FFTW3
736 
737 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_HDF5_swigconstant(_IMP_cnmultifit)
738 IMP_CNMULTIFIT_HAS_HDF5 = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_HDF5
739 
740 _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_RMF_swigconstant(_IMP_cnmultifit)
741 IMP_CNMULTIFIT_HAS_RMF = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_RMF
742 
743 _IMP_cnmultifit.IMPCNMULTIFIT_SHOW_WARNINGS_swigconstant(_IMP_cnmultifit)
744 IMPCNMULTIFIT_SHOW_WARNINGS = _IMP_cnmultifit.IMPCNMULTIFIT_SHOW_WARNINGS
745 AlignSymmetrics=list
746 _plural_types.append("AlignSymmetrics")
747 _value_types.append("AlignSymmetric")
748 
749 CnSymmAxisDetectors=list
750 _plural_types.append("CnSymmAxisDetectors")
751 _value_types.append("CnSymmAxisDetector")
752 
753 MolCnSymmAxisDetectors=list
754 _plural_types.append("MolCnSymmAxisDetectors")
755 _value_types.append("MolCnSymmAxisDetector")
756 
757 class CnSymmAxisDetector(object):
758  """Proxy of C++ IMP::cnmultifit::CnSymmAxisDetector class"""
759  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
760 
761  def __init__(self, *args):
762  """
763  __init__(IMP::cnmultifit::CnSymmAxisDetector self, int symm_deg, DensityMap dmap, float density_threshold, float top_p=0.8) -> CnSymmAxisDetector
764  __init__(IMP::cnmultifit::CnSymmAxisDetector self, int symm_deg, DensityMap dmap, float density_threshold) -> CnSymmAxisDetector
765  __init__(IMP::cnmultifit::CnSymmAxisDetector self, int symm_deg, IMP::atom::Hierarchies const & mhs) -> CnSymmAxisDetector
766  """
767  this = _IMP_cnmultifit.new_CnSymmAxisDetector(*args)
768  try:
769  self.this.append(this)
770  except:
771  self.this = this
772 
773  def get_pca(self):
774  """get_pca(CnSymmAxisDetector self) -> PrincipalComponentAnalysis3D"""
775  return _IMP_cnmultifit.CnSymmAxisDetector_get_pca(self)
776 
777 
778  def calc_symm_score(self, symm_axis_ind):
779  """calc_symm_score(CnSymmAxisDetector self, int symm_axis_ind) -> float"""
780  return _IMP_cnmultifit.CnSymmAxisDetector_calc_symm_score(self, symm_axis_ind)
781 
782 
783  def get_symmetry_axis(self):
784  """get_symmetry_axis(CnSymmAxisDetector self) -> Vector3D"""
785  return _IMP_cnmultifit.CnSymmAxisDetector_get_symmetry_axis(self)
786 
787 
788  def get_symmetry_axis_index(self):
789  """get_symmetry_axis_index(CnSymmAxisDetector self) -> int"""
790  return _IMP_cnmultifit.CnSymmAxisDetector_get_symmetry_axis_index(self)
791 
792 
793  def get_non_symmetry_axis_length(self):
794  """get_non_symmetry_axis_length(CnSymmAxisDetector self) -> int"""
795  return _IMP_cnmultifit.CnSymmAxisDetector_get_non_symmetry_axis_length(self)
796 
797 
798  def show(self, *args):
799  """
800  show(CnSymmAxisDetector self, _ostream out)
801  show(CnSymmAxisDetector self)
802  """
803  return _IMP_cnmultifit.CnSymmAxisDetector_show(self, *args)
804 
805 
806  def __str__(self):
807  """__str__(CnSymmAxisDetector self) -> std::string"""
808  return _IMP_cnmultifit.CnSymmAxisDetector___str__(self)
809 
810 
811  def __repr__(self):
812  """__repr__(CnSymmAxisDetector self) -> std::string"""
813  return _IMP_cnmultifit.CnSymmAxisDetector___repr__(self)
814 
815  __swig_destroy__ = _IMP_cnmultifit.delete_CnSymmAxisDetector
816  __del__ = lambda self: None
817 CnSymmAxisDetector_swigregister = _IMP_cnmultifit.CnSymmAxisDetector_swigregister
818 CnSymmAxisDetector_swigregister(CnSymmAxisDetector)
819 
820 class MolCnSymmAxisDetector(object):
821  """Proxy of C++ IMP::cnmultifit::MolCnSymmAxisDetector class"""
822  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
823 
824  def __init__(self, symm_deg, mhs):
825  """__init__(IMP::cnmultifit::MolCnSymmAxisDetector self, int symm_deg, IMP::atom::Hierarchies const & mhs) -> MolCnSymmAxisDetector"""
826  this = _IMP_cnmultifit.new_MolCnSymmAxisDetector(symm_deg, mhs)
827  try:
828  self.this.append(this)
829  except:
830  self.this = this
831 
832  def get_pca(self):
833  """get_pca(MolCnSymmAxisDetector self) -> PrincipalComponentAnalysis3D"""
834  return _IMP_cnmultifit.MolCnSymmAxisDetector_get_pca(self)
835 
836 
837  def get_symmetry_axis(self):
838  """get_symmetry_axis(MolCnSymmAxisDetector self) -> Vector3D"""
839  return _IMP_cnmultifit.MolCnSymmAxisDetector_get_symmetry_axis(self)
840 
841 
842  def get_symmetry_axis_index(self):
843  """get_symmetry_axis_index(MolCnSymmAxisDetector self) -> int"""
844  return _IMP_cnmultifit.MolCnSymmAxisDetector_get_symmetry_axis_index(self)
845 
846 
847  def show(self, *args):
848  """
849  show(MolCnSymmAxisDetector self, _ostream out)
850  show(MolCnSymmAxisDetector self)
851  """
852  return _IMP_cnmultifit.MolCnSymmAxisDetector_show(self, *args)
853 
854 
855  def calc_symm_score(self, symm_axis_ind):
856  """calc_symm_score(MolCnSymmAxisDetector self, int symm_axis_ind) -> float"""
857  return _IMP_cnmultifit.MolCnSymmAxisDetector_calc_symm_score(self, symm_axis_ind)
858 
859 
860  def __str__(self):
861  """__str__(MolCnSymmAxisDetector self) -> std::string"""
862  return _IMP_cnmultifit.MolCnSymmAxisDetector___str__(self)
863 
864 
865  def __repr__(self):
866  """__repr__(MolCnSymmAxisDetector self) -> std::string"""
867  return _IMP_cnmultifit.MolCnSymmAxisDetector___repr__(self)
868 
869  __swig_destroy__ = _IMP_cnmultifit.delete_MolCnSymmAxisDetector
870  __del__ = lambda self: None
871 MolCnSymmAxisDetector_swigregister = _IMP_cnmultifit.MolCnSymmAxisDetector_swigregister
872 MolCnSymmAxisDetector_swigregister(MolCnSymmAxisDetector)
873 
874 class AlignSymmetric(object):
875  """Proxy of C++ IMP::cnmultifit::AlignSymmetric class"""
876  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
877 
878  def __init__(self, dmap, threshold, cn_symm_deg):
879  """__init__(IMP::cnmultifit::AlignSymmetric self, DensityMap dmap, float threshold, int cn_symm_deg) -> AlignSymmetric"""
880  this = _IMP_cnmultifit.new_AlignSymmetric(dmap, threshold, cn_symm_deg)
881  try:
882  self.this.append(this)
883  except:
884  self.this = this
885 
886  def get_sorted_principal_values(self):
887  """get_sorted_principal_values(AlignSymmetric self) -> IMP::Floats"""
888  return _IMP_cnmultifit.AlignSymmetric_get_sorted_principal_values(self)
889 
890 
891  def score_alignment(self, mhs, max_allowed_diff):
892  """score_alignment(AlignSymmetric self, IMP::atom::Hierarchies mhs, float max_allowed_diff) -> int"""
893  return _IMP_cnmultifit.AlignSymmetric_score_alignment(self, mhs, max_allowed_diff)
894 
895 
896  def get_symm_axis_alignments_from_model_to_density(self, mhs, sample_translation, fine_rotation_sampling=True):
897  """
898  get_symm_axis_alignments_from_model_to_density(AlignSymmetric self, IMP::atom::Hierarchies mhs, bool sample_translation, bool fine_rotation_sampling=True) -> IMP::algebra::Transformation3Ds
899  get_symm_axis_alignments_from_model_to_density(AlignSymmetric self, IMP::atom::Hierarchies mhs, bool sample_translation) -> IMP::algebra::Transformation3Ds
900  """
901  return _IMP_cnmultifit.AlignSymmetric_get_symm_axis_alignments_from_model_to_density(self, mhs, sample_translation, fine_rotation_sampling)
902 
903 
904  def show(self, *args):
905  """
906  show(AlignSymmetric self, _ostream out)
907  show(AlignSymmetric self)
908  """
909  return _IMP_cnmultifit.AlignSymmetric_show(self, *args)
910 
911 
912  def __str__(self):
913  """__str__(AlignSymmetric self) -> std::string"""
914  return _IMP_cnmultifit.AlignSymmetric___str__(self)
915 
916 
917  def __repr__(self):
918  """__repr__(AlignSymmetric self) -> std::string"""
919  return _IMP_cnmultifit.AlignSymmetric___repr__(self)
920 
921  __swig_destroy__ = _IMP_cnmultifit.delete_AlignSymmetric
922  __del__ = lambda self: None
923 AlignSymmetric_swigregister = _IMP_cnmultifit.AlignSymmetric_swigregister
924 AlignSymmetric_swigregister(AlignSymmetric)
925 
926 
927 def generate_cn_transformations(mhs, symm_deg):
928  """generate_cn_transformations(IMP::atom::Hierarchies mhs, int symm_deg) -> IMP::algebra::Transformation3Ds"""
929  return _IMP_cnmultifit.generate_cn_transformations(mhs, symm_deg)
930 
931 def generate_translations_along_symm_axis(mhs, symm_deg):
932  """generate_translations_along_symm_axis(IMP::atom::Hierarchies mhs, int symm_deg) -> IMP::algebra::Transformation3Ds"""
933  return _IMP_cnmultifit.generate_translations_along_symm_axis(mhs, symm_deg)
934 
935 def symmetry_local_fitting(mhs, cn_symm_deg, dn_symm_deg, dmap, num_of_trans_to_consider):
936  """symmetry_local_fitting(IMP::atom::Hierarchies mhs, int cn_symm_deg, int dn_symm_deg, DensityMap dmap, int num_of_trans_to_consider) -> FittingSolutions"""
937  return _IMP_cnmultifit.symmetry_local_fitting(mhs, cn_symm_deg, dn_symm_deg, dmap, num_of_trans_to_consider)
938 
939 def build_cn_dens_assembly(subunit_dens, asmb_dens_header, monomer_t, symm_deg):
940  """build_cn_dens_assembly(DensityMap subunit_dens, DensityHeader asmb_dens_header, Transformation3D monomer_t, int symm_deg) -> DensityMap"""
941  return _IMP_cnmultifit.build_cn_dens_assembly(subunit_dens, asmb_dens_header, monomer_t, symm_deg)
942 
943 def transform_cn_assembly(mhs, monomer_t):
944  """transform_cn_assembly(IMP::atom::Hierarchies mhs, Transformation3D monomer_t)"""
945  return _IMP_cnmultifit.transform_cn_assembly(mhs, monomer_t)
946 
947 def fit_cn_assembly(*args):
948  """
949  fit_cn_assembly(IMP::atom::Hierarchies mhs, int dn_symm_deg, DensityMap dmap, float threshold, AlignSymmetric aligner, bool sample_translation=False, bool fine_rotational_sampling=True) -> FittingSolutions
950  fit_cn_assembly(IMP::atom::Hierarchies mhs, int dn_symm_deg, DensityMap dmap, float threshold, AlignSymmetric aligner, bool sample_translation=False) -> FittingSolutions
951  fit_cn_assembly(IMP::atom::Hierarchies mhs, int dn_symm_deg, DensityMap dmap, float threshold, AlignSymmetric aligner) -> FittingSolutions
952  fit_cn_assembly(DensityMap asmb_map, MolCnSymmAxisDetector symm_mol, DensityMap dmap, CnSymmAxisDetector symm_map, int symm_deg, float threshold) -> FittingSolutions
953  """
954  return _IMP_cnmultifit.fit_cn_assembly(*args)
955 
956 def pca_matching(pca1, pca2, resolution):
957  """pca_matching(PrincipalComponentAnalysis3D pca1, PrincipalComponentAnalysis3D pca2, float resolution) -> bool"""
958  return _IMP_cnmultifit.pca_matching(pca1, pca2, resolution)
959 
960 def cn_symm_score(mhs, center, direction, symm_deg):
961  """cn_symm_score(IMP::atom::Hierarchies mhs, Vector3D center, Vector3D direction, int symm_deg) -> float"""
962  return _IMP_cnmultifit.cn_symm_score(mhs, center, direction, symm_deg)
963 
964 def prune_by_pca(param_fn, sols, dn=1):
965  """
966  prune_by_pca(std::string const & param_fn, IMP::multifit::FittingSolutionRecords const & sols, int dn=1) -> IMP::multifit::FittingSolutionRecords
967  prune_by_pca(std::string const & param_fn, IMP::multifit::FittingSolutionRecords const & sols) -> IMP::multifit::FittingSolutionRecords
968  """
969  return _IMP_cnmultifit.prune_by_pca(param_fn, sols, dn)
970 
971 def calc_transformation_around_axis(a, b, angle_rad):
972  """calc_transformation_around_axis(Vector3D a, Vector3D b, float angle_rad) -> Transformation3D"""
973  return _IMP_cnmultifit.calc_transformation_around_axis(a, b, angle_rad)
974 
975 def get_cn_rmsd(mh1, mh2):
976  """get_cn_rmsd(IMP::atom::Hierarchies mh1, IMP::atom::Hierarchies mh2) -> float"""
977  return _IMP_cnmultifit.get_cn_rmsd(mh1, mh2)
978 
979 def do_all_fitting(*args):
980  """
981  do_all_fitting(std::string const param_filename, std::string const chimera_filename)
982  do_all_fitting(std::string const param_filename)
983  """
984  return _IMP_cnmultifit.do_all_fitting(*args)
985 
986 def get_rmsd_for_models(param_filename, trans_filename, ref_filename, start_model=0, end_model=-1):
987  """
988  get_rmsd_for_models(std::string const param_filename, std::string const trans_filename, std::string const ref_filename, int start_model=0, int end_model=-1) -> IMP::Floats
989  get_rmsd_for_models(std::string const param_filename, std::string const trans_filename, std::string const ref_filename, int start_model=0) -> IMP::Floats
990  get_rmsd_for_models(std::string const param_filename, std::string const trans_filename, std::string const ref_filename) -> IMP::Floats
991  """
992  return _IMP_cnmultifit.get_rmsd_for_models(param_filename, trans_filename, ref_filename, start_model, end_model)
993 _all_commands = ["build", "rmsd", "surface",
994  "param", "chimera_models"]
995 
996 
997 def get_module_version():
998  """get_module_version() -> std::string const"""
999  return _IMP_cnmultifit.get_module_version()
1000 
1001 def get_example_path(fname):
1002  """get_example_path(std::string fname) -> std::string"""
1003  return _IMP_cnmultifit.get_example_path(fname)
1004 
1005 def get_data_path(fname):
1006  """get_data_path(std::string fname) -> std::string"""
1007  return _IMP_cnmultifit.get_data_path(fname)
1008 from . import _version_check
1009 _version_check.check_version(get_module_version())
1010 __version__ = get_module_version()
1011 
1012 
1013 
IMP::container
Various classes to hold sets of particles.
IMP::cnmultifit::do_all_fitting
void do_all_fitting(const std::string param_filename, const std::string chimera_filename="")
High level interface to build cyclic symmetric complexes.
IMP::cgal
Make CGAL functionality available to IMP.
IMP::get_data_path
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
IMP::score_functor
Composable functors to implement scores via compile-time composition.
IMP::statistics
Code to compute statistical measures.
IMP::cnmultifit::cn_symm_score
float cn_symm_score(atom::Hierarchies mhs, const algebra::Vector3D &center, const algebra::Vector3D &direction, int symm_deg)
scores an input vector as a symmetry axis
IMP::multifit
Fitting atomic structures into a cryo-electron microscopy density map.
IMP::em
Basic utilities for handling cryo-electron microscopy 3D density maps.
IMP::cnmultifit::get_cn_rmsd
float get_cn_rmsd(atom::Hierarchies mh1, atom::Hierarchies mh2)
Find correspondence between the two rings and calculate rmsd.
IMP::core
Basic functionality that is expected to be used by a wide variety of IMP users.
IMP::algebra
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
IMP::atom::show
void show(Hierarchy h, std::ostream &out=std::cout)
Print out a molecular hierarchy.
Definition: atom/Hierarchy.h:437
IMP::get_example_path
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
IMP::cnmultifit::fit_cn_assembly
em::FittingSolutions fit_cn_assembly(atom::Hierarchies mhs, int dn_symm_deg, em::DensityMap *dmap, float threshold, const AlignSymmetric &aligner, bool sample_translation=false, bool fine_rotational_sampling=true)
Fit a symmetric model to its density.
IMP::display
Output IMP model data in various file formats.
IMP::atom
Functionality for loading, creating, manipulating and scoring atomic structures.
IMP::rmf
Support for the RMF file format for storing hierarchical molecular data and markup.
IMP::domino
Divide-and-conquer inferential optimization in discrete space.