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IMP Reference Guide  2.5.0
The Integrative Modeling Platform
benchmark/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.5
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2015 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_benchmark', [dirname(__file__)])
23  except ImportError:
24  import _IMP_benchmark
25  return _IMP_benchmark
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_benchmark', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_benchmark = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_benchmark
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_BENCHMARK_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_BENCHMARK_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_benchmark.delete_IMP_BENCHMARK_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_BENCHMARK_SwigPyIterator self) -> PyObject *"""
125  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_BENCHMARK_SwigPyIterator self, size_t n=1) -> IMP_BENCHMARK_SwigPyIterator
131  incr(IMP_BENCHMARK_SwigPyIterator self) -> IMP_BENCHMARK_SwigPyIterator
132  """
133  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_BENCHMARK_SwigPyIterator self, size_t n=1) -> IMP_BENCHMARK_SwigPyIterator
139  decr(IMP_BENCHMARK_SwigPyIterator self) -> IMP_BENCHMARK_SwigPyIterator
140  """
141  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_BENCHMARK_SwigPyIterator self, IMP_BENCHMARK_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_BENCHMARK_SwigPyIterator self, IMP_BENCHMARK_SwigPyIterator x) -> bool"""
151  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_BENCHMARK_SwigPyIterator self) -> IMP_BENCHMARK_SwigPyIterator"""
156  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_BENCHMARK_SwigPyIterator self) -> PyObject *"""
161  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_BENCHMARK_SwigPyIterator self) -> PyObject *"""
166  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_BENCHMARK_SwigPyIterator self) -> PyObject *"""
171  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_BENCHMARK_SwigPyIterator self, ptrdiff_t n) -> IMP_BENCHMARK_SwigPyIterator"""
176  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_BENCHMARK_SwigPyIterator self, IMP_BENCHMARK_SwigPyIterator x) -> bool"""
181  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_BENCHMARK_SwigPyIterator self, IMP_BENCHMARK_SwigPyIterator x) -> bool"""
186  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_BENCHMARK_SwigPyIterator self, ptrdiff_t n) -> IMP_BENCHMARK_SwigPyIterator"""
191  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_BENCHMARK_SwigPyIterator self, ptrdiff_t n) -> IMP_BENCHMARK_SwigPyIterator"""
196  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_BENCHMARK_SwigPyIterator self, ptrdiff_t n) -> IMP_BENCHMARK_SwigPyIterator"""
201  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_BENCHMARK_SwigPyIterator self, ptrdiff_t n) -> IMP_BENCHMARK_SwigPyIterator
207  __sub__(IMP_BENCHMARK_SwigPyIterator self, IMP_BENCHMARK_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_BENCHMARK_SwigPyIterator_swigregister = _IMP_benchmark.IMP_BENCHMARK_SwigPyIterator_swigregister
214 IMP_BENCHMARK_SwigPyIterator_swigregister(IMP_BENCHMARK_SwigPyIterator)
215 
216 _value_types=[]
217 _object_types=[]
218 _raii_types=[]
219 _plural_types=[]
220 
221 
222 _IMP_benchmark.IMP_DEBUG_swigconstant(_IMP_benchmark)
223 IMP_DEBUG = _IMP_benchmark.IMP_DEBUG
224 
225 _IMP_benchmark.IMP_RELEASE_swigconstant(_IMP_benchmark)
226 IMP_RELEASE = _IMP_benchmark.IMP_RELEASE
227 
228 _IMP_benchmark.IMP_SILENT_swigconstant(_IMP_benchmark)
229 IMP_SILENT = _IMP_benchmark.IMP_SILENT
230 
231 _IMP_benchmark.IMP_PROGRESS_swigconstant(_IMP_benchmark)
232 IMP_PROGRESS = _IMP_benchmark.IMP_PROGRESS
233 
234 _IMP_benchmark.IMP_TERSE_swigconstant(_IMP_benchmark)
235 IMP_TERSE = _IMP_benchmark.IMP_TERSE
236 
237 _IMP_benchmark.IMP_VERBOSE_swigconstant(_IMP_benchmark)
238 IMP_VERBOSE = _IMP_benchmark.IMP_VERBOSE
239 
240 _IMP_benchmark.IMP_MEMORY_swigconstant(_IMP_benchmark)
241 IMP_MEMORY = _IMP_benchmark.IMP_MEMORY
242 
243 _IMP_benchmark.IMP_NONE_swigconstant(_IMP_benchmark)
244 IMP_NONE = _IMP_benchmark.IMP_NONE
245 
246 _IMP_benchmark.IMP_USAGE_swigconstant(_IMP_benchmark)
247 IMP_USAGE = _IMP_benchmark.IMP_USAGE
248 
249 _IMP_benchmark.IMP_INTERNAL_swigconstant(_IMP_benchmark)
250 IMP_INTERNAL = _IMP_benchmark.IMP_INTERNAL
251 
252 _IMP_benchmark.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_benchmark)
253 IMP_KERNEL_HAS_LOG4CXX = _IMP_benchmark.IMP_KERNEL_HAS_LOG4CXX
254 
255 _IMP_benchmark.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_benchmark)
256 IMP_COMPILER_HAS_AUTO = _IMP_benchmark.IMP_COMPILER_HAS_AUTO
257 
258 _IMP_benchmark.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_benchmark)
259 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_benchmark.IMP_COMPILER_HAS_DEBUG_VECTOR
260 
261 _IMP_benchmark.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_benchmark)
262 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_benchmark.IMP_KERNEL_HAS_BOOST_RANDOM
263 
264 _IMP_benchmark.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_benchmark)
265 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_benchmark.IMP_KERNEL_HAS_GPERFTOOLS
266 
267 _IMP_benchmark.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_benchmark)
268 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_benchmark.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
269 
270 _IMP_benchmark.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_benchmark)
271 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_benchmark.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
272 
273 _IMP_benchmark.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_benchmark)
274 IMPKERNEL_SHOW_WARNINGS = _IMP_benchmark.IMPKERNEL_SHOW_WARNINGS
275 import sys
276 class _DirectorObjects(object):
277  """@internal Simple class to keep references to director objects
278  to prevent premature deletion."""
279  def __init__(self):
280  self._objects = []
281  def register(self, obj):
282  """Take a reference to a director object; will only work for
283  refcounted C++ classes"""
284  if hasattr(obj, 'get_ref_count'):
285  self._objects.append(obj)
286  def cleanup(self):
287  """Only drop our reference and allow cleanup by Python if no other
288  Python references exist (we hold 3 references: one in self._objects,
289  one in x, and one in the argument list for getrefcount) *and* no
290  other C++ references exist (the Python object always holds one)"""
291  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
292  or x.get_ref_count() > 1]
293  # Do in two steps so the references are kept until the end of the
294  # function (deleting references may trigger a fresh call to this method)
295  self._objects = objs
296  def get_object_count(self):
297  """Get number of director objects (useful for testing only)"""
298  return len(self._objects)
299 _director_objects = _DirectorObjects()
300 
301 class _ostream(object):
302  """Proxy of C++ std::ostream class"""
303  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
304 
305  def __init__(self, *args, **kwargs):
306  raise AttributeError("No constructor defined")
307  __repr__ = _swig_repr
308 
309  def write(self, osa_buf):
310  """write(_ostream self, char const * osa_buf)"""
311  return _IMP_benchmark._ostream_write(self, osa_buf)
312 
313 _ostream_swigregister = _IMP_benchmark._ostream_swigregister
314 _ostream_swigregister(_ostream)
315 
316 
317 _IMP_benchmark.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_benchmark)
318 IMP_COMPILER_HAS_OVERRIDE = _IMP_benchmark.IMP_COMPILER_HAS_OVERRIDE
319 
320 _IMP_benchmark.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_benchmark)
321 IMP_COMPILER_HAS_FINAL = _IMP_benchmark.IMP_COMPILER_HAS_FINAL
322 
323 _IMP_benchmark.IMP_HAS_NOEXCEPT_swigconstant(_IMP_benchmark)
324 IMP_HAS_NOEXCEPT = _IMP_benchmark.IMP_HAS_NOEXCEPT
325 import IMP
326 
327 _IMP_benchmark.IMP_BENCHMARK_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_benchmark)
328 IMP_BENCHMARK_HAS_BOOST_FILESYSTEM = _IMP_benchmark.IMP_BENCHMARK_HAS_BOOST_FILESYSTEM
329 
330 _IMP_benchmark.IMP_BENCHMARK_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_benchmark)
331 IMP_BENCHMARK_HAS_BOOST_PROGRAMOPTIONS = _IMP_benchmark.IMP_BENCHMARK_HAS_BOOST_PROGRAMOPTIONS
332 
333 _IMP_benchmark.IMP_BENCHMARK_HAS_BOOST_RANDOM_swigconstant(_IMP_benchmark)
334 IMP_BENCHMARK_HAS_BOOST_RANDOM = _IMP_benchmark.IMP_BENCHMARK_HAS_BOOST_RANDOM
335 
336 _IMP_benchmark.IMP_BENCHMARK_HAS_BOOST_SYSTEM_swigconstant(_IMP_benchmark)
337 IMP_BENCHMARK_HAS_BOOST_SYSTEM = _IMP_benchmark.IMP_BENCHMARK_HAS_BOOST_SYSTEM
338 
339 _IMP_benchmark.IMPBENCHMARK_SHOW_WARNINGS_swigconstant(_IMP_benchmark)
340 IMPBENCHMARK_SHOW_WARNINGS = _IMP_benchmark.IMPBENCHMARK_SHOW_WARNINGS
341 _raii_types.append("Profiler")
342 
343 
344 def report(*args):
345  """
346  report(std::string benchmark, std::string algorithm, double time, double check)
347  report(std::string benchmark, double time, double check)
348  """
349  return _IMP_benchmark.report(*args)
350 
351 def get_return_value():
352  """get_return_value() -> int"""
353  return _IMP_benchmark.get_return_value()
354 class Profiler(IMP._RAII):
355  """Proxy of C++ IMP::benchmark::Profiler class"""
356  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
357 
358  def __init__(self, *args):
359  """
360  __init__(IMP::benchmark::Profiler self) -> Profiler
361  __init__(IMP::benchmark::Profiler self, std::string name) -> Profiler
362  """
363  this = _IMP_benchmark.new_Profiler(*args)
364  try:
365  self.this.append(this)
366  except:
367  self.this = this
368 
369  def set(self, name):
370  """set(Profiler self, std::string name)"""
371  return _IMP_benchmark.Profiler_set(self, name)
372 
373 
374  def reset(self):
375  """reset(Profiler self)"""
376  return _IMP_benchmark.Profiler_reset(self)
377 
378  __swig_destroy__ = _IMP_benchmark.delete_Profiler
379  __del__ = lambda self: None
380 
381  def show(self, *args):
382  """
383  show(Profiler self, _ostream out)
384  show(Profiler self)
385  """
386  return _IMP_benchmark.Profiler_show(self, *args)
387 
388  def __enter__(self):
389  return self
390  def __exit__(self, exc_type, exc_val, exc_tb):
391  self.reset()
392  return False
393 
394 
395  def __str__(self):
396  """__str__(Profiler self) -> std::string"""
397  return _IMP_benchmark.Profiler___str__(self)
398 
399 
400  def __repr__(self):
401  """__repr__(Profiler self) -> std::string"""
402  return _IMP_benchmark.Profiler___repr__(self)
403 
404 Profiler_swigregister = _IMP_benchmark.Profiler_swigregister
405 Profiler_swigregister(Profiler)
406 
407 
408 def get_module_version():
409  """get_module_version() -> std::string const"""
410  return _IMP_benchmark.get_module_version()
411 
412 def get_example_path(fname):
413  """get_example_path(std::string fname) -> std::string"""
414  return _IMP_benchmark.get_example_path(fname)
415 
416 def get_data_path(fname):
417  """get_data_path(std::string fname) -> std::string"""
418  return _IMP_benchmark.get_data_path(fname)
419 from . import _version_check
420 _version_check.check_version(get_module_version())
421 __version__ = get_module_version()
422 
423 
424 
void report(std::string benchmark, std::string algorithm, double time, double check)
Report a benchmark result in a standard way.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
void show(Hierarchy h, std::ostream &out=std::cout)
Print out a molecular hierarchy.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.