atom_io.h File Reference

Handle read/write of kernel::Model data from/to files. More...

#include <IMP/rmf/rmf_config.h>
#include "link_macros.h"
#include <IMP/atom/Hierarchy.h>

Include dependency graph for atom_io.h:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Namespaces
	IMP
	Synonym for IMP::kernel.
	IMP::rmf
	Support for the RMF file format for storing hierarchical molecular data and markup.

Hierarchy I/O
Hierarchy I/O writes IMP::atom::Hierarchy information along with the information contained in the following decorators IMP::atom::Atom IMP::atom::Residue IMP::core::XYZR IMP::atom::Mass IMP::atom::Diffusion IMP::core::Typed IMP::display::Colored IMP::atom::Domain IMP::atom::Molecule IMP::atom::Copy IMP::atom::State IMP::atom::Representation IMP::core::RigidMember (rigid body information will be written and rigid bodies created even when the IMP::core::RigidBody is not itself written to the file) IMP::core::RigidBody Note IMP::core::XYZ and IMP::core::RigidBody data are stored at each frame. Data for all the other decorators are assumed to be static attributes, and are stored once for the entire RMF file. There is currently no way to customize this. Complain to the IMP team if this is problematic. Note To avoid unexpected behavior, be aware that when linking atom::Hierarchies against an RMF file, the linked hierarchies are assumed to be identical in all of their static attributes to the hierarchies in the RMF file (within RMF::REPRESENTATION nodes). In particular, these hierarchies must have the same tree topology (number of children for each node).
void	IMP::rmf::add_hierarchies (RMF::FileHandle fh, const atom::Hierarchies &hs)
void	IMP::rmf::add_hierarchies (RMF::NodeHandle fh, const atom::Hierarchies &hs)
void	IMP::rmf::add_hierarchy (RMF::FileHandle fh, atom::Hierarchy hs)
atom::Hierarchies	IMP::rmf::create_hierarchies (RMF::FileConstHandle fh, kernel::Model *m)
void	IMP::rmf::link_hierarchies (RMF::FileConstHandle fh, const atom::Hierarchies &hs)

Detailed Description

Handle read/write of kernel::Model data from/to files.

Copyright 2007-2015 IMP Inventors. All rights reserved.

Definition in file atom_io.h.