IMP  2.3.1
The Integrative Modeling Platform
domino_filters.h
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1 /**
2  * \file IMP/em2d/domino_filters.h
3  * \brief SubsetFilter for checking overlap between projections and images
4  *
5  * Copyright 2007-2014 IMP Inventors. All rights reserved.
6  *
7  */
8 
9 #ifndef IMPEM2D_DOMINO_FILTERS_H
10 #define IMPEM2D_DOMINO_FILTERS_H
11 
12 #include "IMP/em2d/image_processing.h"
13 #include "IMP/em2d/domino_particle_states.h"
14 #include "IMP/algebra/Vector3D.h"
15 #include "IMP/domino/subset_filters.h"
16 #include "IMP/domino/Assignment.h"
17 #include "IMP/base/Pointer.h"
18 #include "IMP/base_types.h"
19 #include "IMP/base/log.h"
20 #include <iostream>
21 
22 IMPEM2D_BEGIN_NAMESPACE
23 
24 //! SubsetFilter for checking overlap between projections and images
25 class IMPEM2DEXPORT DistanceFilter : public domino::SubsetFilter {
26 
27  protected:
28  domino::Subset subset_acting_on_;
29  domino::Subset subset_restrained_;
30  base::Pointer<domino::ParticleStatesTable> ps_table_;
31  double max_distance_;
32 
33  public:
34  /*! Filter action on the distance between two particles. To be used with
35  DOMINO
36  \param[in] subset_to_act_on A subset that is going to be filtered.
37  \param[in] subset_to_restrain A subset of 2 particles that need to be
38  within a given distance
39  \param[in] ps_table table containing the states for subset_to_act_on and
40  subset_to_restraint
41  \param[in] max_distance The maximum distance between the particles in
42  subset_to_restrain
43  */
44  DistanceFilter(const domino::Subset &subset_to_act_on,
45  const domino::Subset &subset_to_restrain,
46  domino::ParticleStatesTable *ps_table, double max_distance)
47  : subset_acting_on_(subset_to_act_on),
48  subset_restrained_(subset_to_restrain),
49  ps_table_(ps_table),
50  max_distance_(max_distance) {
51  IMP_LOG_TERSE("DistanceFilter created" << std::endl);
52  }
53  void show(std::ostream &out = std::cout) const {
54  out << "DistanceFilter" << std::endl;
55  }
56 
57  virtual bool get_is_ok(const IMP::domino::Assignment &assignment) const
58  IMP_OVERRIDE;
59 
60  IMP_OBJECT_NO_WARNING(DistanceFilter);
61 };
62 
63 IMP_OBJECTS(DistanceFilter, DistanceFilters);
64 
65 IMPEM2D_END_NAMESPACE
66 
67 #endif /* IMPEM2D_DOMINO_FILTERS_H */
image_processing.h
Image processing functions.
base_types.h
Import IMP/kernel/base_types.h in the namespace.
Assignment.h
A Bayesian inference-based sampler.
IMP_OBJECT_NO_WARNING
#define IMP_OBJECT_NO_WARNING(Name)
Only to work around a gcc bug.
Definition: object_macros.h:38
subset_filters.h
A Bayesian inference-based sampler.
IMP::domino::Subset
Represent a subset of the particles being optimized.
Definition: Subset.h:33
IMP::domino::SubsetFilter::get_is_ok
virtual bool get_is_ok(const Assignment &state) const =0
domino_particle_states.h
kernel::Particles states for a rigid body that is going to be projected
IMP_LOG_TERSE
#define IMP_LOG_TERSE(expr)
Definition: log_macros.h:83
IMP::em2d::DistanceFilter
SubsetFilter for checking overlap between projections and images.
Definition: domino_filters.h:25
IMP_OBJECTS
#define IMP_OBJECTS(Name, PluralName)
Define the types for storing sets of objects.
Definition: object_macros.h:52
Pointer.h
A nullptr-initialized pointer to an IMP Object.
IMP::domino::Assignment
Store a configuration of a subset.
Definition: Assignment.h:32
IMP::atom::show
void show(Hierarchy h, std::ostream &out=std::cout)
Print out a molecular hierarchy.
Definition: atom/Hierarchy.h:450
Vector3D.h
Simple 3D vector class.
IMP::em2d::DistanceFilter::DistanceFilter
DistanceFilter(const domino::Subset &subset_to_act_on, const domino::Subset &subset_to_restrain, domino::ParticleStatesTable *ps_table, double max_distance)
Definition: domino_filters.h:44
log.h
Logging and error reporting support.
IMP_OVERRIDE
#define IMP_OVERRIDE
Cause a compile error if this method does not override a parent method.
Definition: compiler_macros.h:75