This is the complete list of members for IMP::multifit::ProteomicsEMAlignmentAtomic, including all inherited members.

add_all_restraints() (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic
add_states_and_filters() (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic
align() (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic
all_rs_filt_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
asmb_data_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
cg_sorted_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
clear_caches()	IMP::base::Object	virtual
conn_rs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
conn_rs_with_filter_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
dmap_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
do_destroy()	IMP::base::Object	protectedvirtual
dummy_rs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
em_rs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
ev_rs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
ev_thr_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
fast_scoring_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
filters_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
filters_set_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
fit_state_key_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
get_alignment_restraints() const (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
get_check_level() const (defined in IMP::base::Object)	IMP::base::Object
get_combinations(bool uniques=false) const (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic
get_log_level() const (defined in IMP::base::Object)	IMP::base::Object
get_model() (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic
get_molecules() const (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic
get_name() const (defined in IMP::base::Object)	IMP::base::Object
get_rigid_bodies() const (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic
get_type_name() const (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	virtual
get_version_info() const	IMP::multifit::ProteomicsEMAlignmentAtomic	virtual
jt_rs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
load_atomic_molecules() (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
load_combination_of_states(const Ints &state4particles)	IMP::multifit::ProteomicsEMAlignmentAtomic
mapping_data_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
mdl_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
mhs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
NonCopyable() (defined in IMP::base::NonCopyable)	IMP::base::NonCopyable	protected
Object(std::string name)	IMP::base::Object	protected
order_key_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
params_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
post_sampling_ev_pairs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
prot_data_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
ProteomicsEMAlignmentAtomic(const ProteinsAnchorsSamplingSpace &mapping_data, multifit::SettingsData *asmb_data, const AlignmentParams &align_param) (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic
pst_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
rbs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
rc_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
restraints_set_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
sampled_assignments_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
sampled_solutions_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
set_check_level(CheckLevel l)	IMP::base::Object
set_density_map(em::DensityMap *dmap, float threshold) (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic
set_fast_scoring(bool state)	IMP::multifit::ProteomicsEMAlignmentAtomic
set_log_level(LogLevel l)	IMP::base::Object
set_name(std::string name) (defined in IMP::base::Object)	IMP::base::Object
set_particle_states_table(domino::SubsetFilterTables &filters) (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
set_was_used(bool tf) const	IMP::base::Object
show(std::ostream &out=std::cout) const (defined in IMP::base::Object)	IMP::base::Object
show_domino_merge_tree() const (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic
show_scores_header(std::ostream &ous=std::cout) const (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic
states_set_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
threshold_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
xlink_rs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
xlink_rs_with_filter_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protected
~Object() (defined in IMP::base::Object)	IMP::base::Object	virtual
~ProteomicsEMAlignmentAtomic() (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)	IMP::multifit::ProteomicsEMAlignmentAtomic	protectedvirtual