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2.3.1
The Integrative Modeling Platform
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IMP::core::MonteCarlo Member List
This is the complete list of members for
IMP::core::MonteCarlo
, including all inherited members.
add_mover
(MonteCarloMover *obj) (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
add_movers
(const MonteCarloMovers &objs) (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
add_optimizer_state
(OptimizerState *obj) (defined in
IMP::kernel::Optimizer
)
IMP::kernel::Optimizer
add_optimizer_states
(const OptimizerStates &objs) (defined in
IMP::kernel::Optimizer
)
IMP::kernel::Optimizer
clear_caches
()
IMP::base::Object
virtual
clear_movers
() (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
clear_optimizer_states
() (defined in
IMP::kernel::Optimizer
)
IMP::kernel::Optimizer
do_accept_or_reject_move
(double score, double last, double proposal_ratio)
IMP::core::MonteCarlo
protected
do_accept_or_reject_move
(double score, double proposal_ratio) (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
protected
do_destroy
()
IMP::base::Object
protected
virtual
do_evaluate
(const kernel::ParticleIndexes &moved) const
IMP::core::MonteCarlo
protected
virtual
do_get_inputs
() const
IMP::kernel::Optimizer
protected
virtual
do_get_interactions
() const
IMP::kernel::ModelObject
protected
virtual
do_get_outputs
() const
IMP::kernel::Optimizer
protected
virtual
do_move
() (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
protected
do_optimize
(unsigned int max_steps)
IMP::core::MonteCarlo
protected
virtual
do_step
()
IMP::core::MonteCarlo
protected
virtual
get_best_accepted_energy
() const
IMP::core::MonteCarlo
get_check_level
() const (defined in
IMP::base::Object
)
IMP::base::Object
get_has_dependencies
() const
IMP::kernel::ModelObject
get_has_movers
() (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
get_has_optimizer_states
() (defined in
IMP::kernel::Optimizer
)
IMP::kernel::Optimizer
get_has_required_score_states
() const
IMP::kernel::ModelObject
get_incremental_scoring_function
() const (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
get_inputs
() const
IMP::kernel::ModelObject
get_interactions
() const
IMP::kernel::ModelObject
get_kt
() const (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
get_last_accepted_energy
() const
IMP::core::MonteCarlo
get_last_score
() const
IMP::kernel::Optimizer
get_log_level
() const (defined in
IMP::base::Object
)
IMP::base::Object
get_maximum_difference
() const (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
get_model
() const (defined in
IMP::kernel::ModelObject
)
IMP::kernel::ModelObject
get_movable_particles
() const
IMP::core::MonteCarlo
protected
get_mover
(unsigned int i) const (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
get_movers
() const (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
get_name
() const (defined in
IMP::base::Object
)
IMP::base::Object
get_number_of_accepted_steps
() const
IMP::core::MonteCarlo
get_number_of_downward_steps
() const
IMP::core::MonteCarlo
get_number_of_forward_steps
() const
IMP::core::MonteCarlo
get_number_of_movers
() const (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
get_number_of_optimizer_states
() const (defined in
IMP::kernel::Optimizer
)
IMP::kernel::Optimizer
get_number_of_proposed_steps
() const
IMP::core::MonteCarlo
get_number_of_upward_steps
() const
IMP::core::MonteCarlo
get_optimizer_state
(unsigned int i) const (defined in
IMP::kernel::Optimizer
)
IMP::kernel::Optimizer
get_optimizer_state_inputs
() const (defined in
IMP::kernel::Optimizer
)
IMP::kernel::Optimizer
protected
get_optimizer_states
() const (defined in
IMP::kernel::Optimizer
)
IMP::kernel::Optimizer
get_outputs
() const
IMP::kernel::ModelObject
get_required_score_states
() const
IMP::kernel::ModelObject
get_score_threshold
() const
IMP::core::MonteCarlo
get_scoring_function
() const
IMP::kernel::Optimizer
get_stop_on_good_score
() const (defined in
IMP::kernel::Optimizer
)
IMP::kernel::Optimizer
get_type_name
() const (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
virtual
get_use_incremental_scoring_function
() const (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
get_version_info
() const
IMP::core::MonteCarlo
virtual
handle_set_has_required_score_states
(bool)
IMP::kernel::ModelObject
protected
virtual
ModelObject
(kernel::Model *m, std::string name) (defined in
IMP::kernel::ModelObject
)
IMP::kernel::ModelObject
MonteCarlo
(kernel::Model *m) (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
NonCopyable
() (defined in
IMP::base::NonCopyable
)
IMP::base::NonCopyable
protected
Object
(std::string name)
IMP::base::Object
protected
optimize
(unsigned int max_steps)
IMP::kernel::Optimizer
Optimizer
(kernel::Model *m, std::string name="Optimizer %1%") (defined in
IMP::kernel::Optimizer
)
IMP::kernel::Optimizer
remove_mover
(MonteCarloMover *d) (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
remove_movers
(const MonteCarloMovers &d) (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
remove_optimizer_state
(OptimizerState *d) (defined in
IMP::kernel::Optimizer
)
IMP::kernel::Optimizer
remove_optimizer_states
(const OptimizerStates &d) (defined in
IMP::kernel::Optimizer
)
IMP::kernel::Optimizer
reserve_movers
(unsigned int sz) (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
reserve_optimizer_states
(unsigned int sz) (defined in
IMP::kernel::Optimizer
)
IMP::kernel::Optimizer
reset_statistics
() (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
set_check_level
(CheckLevel l)
IMP::base::Object
set_has_dependencies
(bool tf)
IMP::kernel::ModelObject
set_has_required_score_states
(bool tf)
IMP::kernel::ModelObject
set_incremental_scoring_function
(IncrementalScoringFunction *isf)
IMP::core::MonteCarlo
set_kt
(Float t) (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
set_log_level
(LogLevel l)
IMP::base::Object
set_maximum_difference
(double d)
IMP::core::MonteCarlo
set_movers
(const MonteCarloMovers &ps) (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
set_movers_order
(const MonteCarloMovers &objs) (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
set_name
(std::string name) (defined in
IMP::base::Object
)
IMP::base::Object
set_optimizer_states
(const OptimizerStates &ps) (defined in
IMP::kernel::Optimizer
)
IMP::kernel::Optimizer
set_optimizer_states_order
(const OptimizerStates &objs) (defined in
IMP::kernel::Optimizer
)
IMP::kernel::Optimizer
set_return_best
(bool tf)
IMP::core::MonteCarlo
set_score_threshold
(double s)
IMP::core::MonteCarlo
set_scoring_function
(ScoringFunctionAdaptor sf)
IMP::kernel::Optimizer
virtual
set_stop_on_good_score
(bool tf)
IMP::kernel::Optimizer
set_was_used
(bool tf) const
IMP::base::Object
show
(std::ostream &out=std::cout) const (defined in
IMP::base::Object
)
IMP::base::Object
update_states
() const
IMP::kernel::Optimizer
protected
~ModelObject
() (defined in
IMP::kernel::ModelObject
)
IMP::kernel::ModelObject
~MonteCarlo
() (defined in
IMP::core::MonteCarlo
)
IMP::core::MonteCarlo
protected
virtual
~Object
() (defined in
IMP::base::Object
)
IMP::base::Object
virtual