| add_member(kernel::ParticleIndexAdaptor p) | IMP::core::RigidBody | |
| add_non_rigid_member(kernel::ParticleIndexAdaptor p) | IMP::core::RigidBody | |
| add_to_derivative(int i, Float v, DerivativeAccumulator &d) | IMP::core::XYZ | |
| add_to_derivatives(const algebra::Vector3D &v, DerivativeAccumulator &d) | IMP::core::XYZ | |
| Decorator(Model *m, ParticleIndex pi) (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | protected |
| Decorator() (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | protected |
| Decorator(ParticleAdaptor p) (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | explicitprotected |
| Gaussian() (defined in IMP::core::Gaussian) | IMP::core::Gaussian | |
| Gaussian(::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) (defined in IMP::core::Gaussian) | IMP::core::Gaussian | |
| Gaussian(const IMP::kernel::ParticleAdaptor &d) (defined in IMP::core::Gaussian) | IMP::core::Gaussian | explicit |
| get_body_member_particle_indexes() const | IMP::core::RigidBody | |
| get_coordinate(int i) const | IMP::core::XYZ | |
| get_coordinate_key(unsigned int i) (defined in IMP::core::XYZ) | IMP::core::XYZ | static |
| get_coordinates() const | IMP::core::RigidBody | |
| get_coordinates_are_optimized() const | IMP::core::RigidBody | |
| get_derivative(int i) const | IMP::core::XYZ | |
| get_derivatives() const | IMP::core::XYZ | |
| get_gaussian() const | IMP::core::Gaussian | |
| get_global_covariance() | IMP::core::Gaussian | |
| get_global_covariance_key() (defined in IMP::core::Gaussian) | IMP::core::Gaussian | static |
| get_is_setup(const IMP::kernel::ParticleAdaptor &p) (defined in IMP::core::Gaussian) | IMP::core::Gaussian | static |
| get_is_setup(kernel::Model *m, kernel::ParticleIndex pi) (defined in IMP::core::Gaussian) | IMP::core::Gaussian | static |
| get_is_valid() const | IMP::kernel::Decorator | |
| get_local_covariance() const | IMP::core::Gaussian | |
| get_local_covariance_key() (defined in IMP::core::Gaussian) | IMP::core::Gaussian | static |
| get_member_indexes() const | IMP::core::RigidBody | |
| get_member_particle_indexes() const | IMP::core::RigidBody | |
| get_members() const | IMP::core::RigidBody | |
| get_model() const | IMP::kernel::Decorator | |
| get_particle() const | IMP::kernel::Decorator | |
| get_particle_index() const | IMP::kernel::Decorator | |
| get_reference_frame() const | IMP::core::RigidBody | |
| get_rigid_members() const (defined in IMP::core::RigidBody) | IMP::core::RigidBody | |
| get_rotational_derivatives() const | IMP::core::RigidBody | |
| get_torque() const | IMP::core::RigidBody | |
| get_variances() const | IMP::core::Gaussian | |
| get_vector_to(const XYZ &b) const | IMP::core::XYZ | |
| get_x() const (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| get_xyz_keys() | IMP::core::XYZ | static |
| get_y() const (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| get_z() const (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| normalize_rotation() | IMP::core::RigidBody | |
| operator Particle *() const (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | |
| operator ParticleIndex() const (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | |
| operator->() const (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | |
| RigidBody() (defined in IMP::core::RigidBody) | IMP::core::RigidBody | |
| RigidBody(::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) (defined in IMP::core::RigidBody) | IMP::core::RigidBody | |
| RigidBody(const IMP::kernel::ParticleAdaptor &d) (defined in IMP::core::RigidBody) | IMP::core::RigidBody | explicit |
| set_coordinate(unsigned int i, Float v) | IMP::core::XYZ | |
| set_coordinates(const algebra::Vector3D &v) | IMP::core::XYZ | |
| set_coordinates_are_optimized(bool tf) | IMP::core::RigidBody | |
| IMP::core::XYZ::set_coordinates_are_optimized(bool tf) const | IMP::core::XYZ | |
| set_global_covariance(IMP_Eigen::Matrix3d covar) | IMP::core::Gaussian | |
| set_is_rigid_member(kernel::ParticleIndex pi, bool tf) | IMP::core::RigidBody | |
| set_local_covariance(const IMP_Eigen::Vector3d covar) | IMP::core::Gaussian | |
| set_reference_frame(const IMP::algebra::ReferenceFrame3D &tr) | IMP::core::RigidBody | |
| set_reference_frame_from_members(const kernel::ParticleIndexes &members) | IMP::core::RigidBody | |
| set_reference_frame_lazy(const IMP::algebra::ReferenceFrame3D &tr) | IMP::core::RigidBody | |
| set_variances(const algebra::Vector3D v) | IMP::core::Gaussian | |
| set_x(Float t) (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| set_y(Float t) (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| set_z(Float t) (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| setup_particle(kernel::Model *m, ParticleIndex pi) | IMP::core::Gaussian | static |
| setup_particle(IMP::kernel::ParticleAdaptor decorator) (defined in IMP::core::Gaussian) | IMP::core::Gaussian | static |
| setup_particle(kernel::Model *m, ParticleIndex pi, algebra::Gaussian3D g) | IMP::core::Gaussian | static |
| setup_particle(IMP::kernel::ParticleAdaptor decorator, algebra::Gaussian3D g) | IMP::core::Gaussian | static |
| IMP::core::RigidBody::setup_particle(kernel::Model *m, ParticleIndex pi, kernel::ParticleIndexesAdaptor ps) | IMP::core::RigidBody | static |
| IMP::core::RigidBody::setup_particle(IMP::kernel::ParticleAdaptor decorator, kernel::ParticleIndexesAdaptor ps) | IMP::core::RigidBody | static |
| IMP::core::RigidBody::setup_particle(kernel::Model *m, ParticleIndex pi, algebra::ReferenceFrame3D rf) | IMP::core::RigidBody | static |
| IMP::core::RigidBody::setup_particle(IMP::kernel::ParticleAdaptor decorator, algebra::ReferenceFrame3D rf) | IMP::core::RigidBody | static |
| IMP::core::XYZ::setup_particle(kernel::Model *m, ParticleIndex pi, algebra::Vector3D v) | IMP::core::XYZ | static |
| IMP::core::XYZ::setup_particle(IMP::kernel::ParticleAdaptor decorator, algebra::Vector3D v) | IMP::core::XYZ | static |
| show(std::ostream &out=std::cout) const (defined in IMP::core::Gaussian) | IMP::core::Gaussian | |
| teardown_particle(RigidBody rb) | IMP::core::RigidBody | static |
| update_global_covariance() | IMP::core::Gaussian | |
| update_members() | IMP::core::RigidBody | |
| Value() (defined in IMP::base::Value) | IMP::base::Value | protected |
| XYZ() (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| XYZ(::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| XYZ(const IMP::kernel::ParticleAdaptor &d) (defined in IMP::core::XYZ) | IMP::core::XYZ | explicit |
| ~RigidBody() (defined in IMP::core::RigidBody) | IMP::core::RigidBody | |
