Argument typedef (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
clear_caches() | IMP::base::Object | virtual |
create_current_decomposition(kernel::Model *m, const kernel::ParticleIndexPair &vt) const | IMP::kernel::PairScore | |
DistancePairScore(const DistanceScore &t0, std::string name="FunctorDistancePairScore %1%") (defined in IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >) | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | |
DistanceScore typedef (defined in IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >) | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | |
do_create_current_decomposition(kernel::Model *m, const kernel::ParticleIndexPair &vt) const | IMP::kernel::PairScore | protectedvirtual |
do_destroy() | IMP::base::Object | protectedvirtual |
do_get_inputs(kernel::Model *m, const kernel::ParticleIndexes &pis) const | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | virtual |
evaluate(const kernel::ParticlePair &vt, DerivativeAccumulator *da) const | IMP::kernel::PairScore | virtual |
evaluate_if_good_index(kernel::Model *m, const kernel::ParticleIndexPair &vt, DerivativeAccumulator *da, double max) const | IMP::kernel::PairScore | virtual |
evaluate_if_good_indexes(kernel::Model *m, const kernel::ParticleIndexPairs &p, DerivativeAccumulator *da, double max, unsigned int lower_bound, unsigned int upper_bound) const | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | virtual |
evaluate_index(kernel::Model *m, const kernel::ParticleIndexPair &pip, DerivativeAccumulator *da) const | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | virtual |
evaluate_indexes(kernel::Model *m, const kernel::ParticleIndexPairs &p, DerivativeAccumulator *da, unsigned int lower_bound, unsigned int upper_bound) const | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | virtual |
get_check_level() const (defined in IMP::base::Object) | IMP::base::Object | |
get_input_containers(Particle *p) const | IMP::kernel::ParticleInputs | virtual |
get_input_particles(Particle *p) const | IMP::kernel::ParticleInputs | virtual |
get_inputs(kernel::Model *m, const ParticleIndexes &pis) const | IMP::kernel::ParticleInputs | |
get_log_level() const (defined in IMP::base::Object) | IMP::base::Object | |
get_maximum_distance() const (defined in IMP::atom::ProteinLigandAtomPairScore) | IMP::atom::ProteinLigandAtomPairScore | |
get_name() const (defined in IMP::base::Object) | IMP::base::Object | |
get_score_functor() | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | |
get_type_name() const (defined in IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >) | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | virtual |
get_version_info() const | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | virtual |
IndexArgument typedef (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
Modifier typedef (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
NonCopyable() (defined in IMP::base::NonCopyable) | IMP::base::NonCopyable | protected |
Object(std::string name) | IMP::base::Object | protected |
PairScore(std::string name="PairScore %1%") (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
PassArgument typedef (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
PassIndexArgument typedef (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
ProteinLigandAtomPairScore(double threshold=std::numeric_limits< double >::max()) (defined in IMP::atom::ProteinLigandAtomPairScore) | IMP::atom::ProteinLigandAtomPairScore | |
ProteinLigandAtomPairScore(double threshold, base::TextInput data_file) (defined in IMP::atom::ProteinLigandAtomPairScore) | IMP::atom::ProteinLigandAtomPairScore | |
set_check_level(CheckLevel l) | IMP::base::Object | |
set_log_level(LogLevel l) | IMP::base::Object | |
set_name(std::string name) (defined in IMP::base::Object) | IMP::base::Object | |
set_was_used(bool tf) const | IMP::base::Object | |
show(std::ostream &out=std::cout) const (defined in IMP::base::Object) | IMP::base::Object | |
StatisticalPairScore(IntKey k, double threshold, base::TextInput data_file) | IMP::core::StatisticalPairScore< ProteinLigandType, true, false > | |
StatisticalPairScore(IntKey k, double threshold, base::TextInput data_file, unsigned int shift) | IMP::core::StatisticalPairScore< ProteinLigandType, true, false > | |
~DistancePairScore() (defined in IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >) | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | protectedvirtual |
~Object() (defined in IMP::base::Object) | IMP::base::Object | virtual |
~ParticleInputs() (defined in IMP::kernel::ParticleInputs) | IMP::kernel::ParticleInputs | protectedvirtual |