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QuadraticClosePairsFinder.h
Go to the documentation of this file.
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/**
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* \file IMP/core/QuadraticClosePairsFinder.h
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* \brief Test all pairs of particles to find close pairs.
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*
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* Copyright 2007-2014 IMP Inventors. All rights reserved.
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*/
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#ifndef IMPCORE_QUADRATIC_CLOSE_PAIRS_FINDER_H
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#define IMPCORE_QUADRATIC_CLOSE_PAIRS_FINDER_H
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#include "
ClosePairsFinder.h
"
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#include <IMP/core/core_config.h>
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IMPCORE_BEGIN_NAMESPACE
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//! Find all nearby pairs by testing all pairs
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/** \see ClosePairsScoreState
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*/
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class
IMPCOREEXPORT
QuadraticClosePairsFinder
:
public
ClosePairsFinder
{
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public
:
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QuadraticClosePairsFinder
();
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bool
get_are_close(
kernel::Particle
*a,
kernel::Particle
*b)
const
{
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return
get_are_close(a->get_model(), a->
get_index
(), b->
get_index
());
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}
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bool
get_are_close(
kernel::Model
*m,
kernel::ParticleIndex
a,
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kernel::ParticleIndex
b)
const
;
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#ifndef SWIG
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using
ClosePairsFinder::get_close_pairs
;
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#else
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kernel::ParticlePairsTemp
get_close_pairs
(
const
kernel::ParticlesTemp
&pc)
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const
;
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kernel::ParticlePairsTemp
get_close_pairs
(
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const
kernel::ParticlesTemp
&pca,
const
kernel::ParticlesTemp
&pcb)
const
;
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#endif
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virtual
IntPairs
get_close_pairs
(
const
algebra::BoundingBox3Ds
&bbs)
const
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IMP_OVERRIDE
;
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virtual
IntPairs
get_close_pairs
(
const
algebra::BoundingBox3Ds
&bas,
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const
algebra::BoundingBox3Ds
&bbs)
const
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IMP_OVERRIDE
;
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virtual
kernel::ParticleIndexPairs
get_close_pairs
(
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kernel::Model
*m,
const
kernel::ParticleIndexes
&pc)
const
IMP_OVERRIDE
;
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virtual
kernel::ParticleIndexPairs
get_close_pairs
(
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kernel::Model
*m,
const
kernel::ParticleIndexes
&pca,
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const
kernel::ParticleIndexes
&pcb)
const
IMP_OVERRIDE
;
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virtual
kernel::ModelObjectsTemp
do_get_inputs
(
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kernel::Model
*m,
const
kernel::ParticleIndexes
&pis)
const
IMP_OVERRIDE
;
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IMP_OBJECT_METHODS
(
QuadraticClosePairsFinder
);
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};
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IMPCORE_END_NAMESPACE
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#endif
/* IMPCORE_QUADRATIC_CLOSE_PAIRS_FINDER_H */
IMP::core::ClosePairsFinder
A base class for algorithms to find spatial proximities.
Definition:
ClosePairsFinder.h:35
IMP::kernel::Particle::get_index
ParticleIndex get_index() const
returns the particle index of this particle in its model
IMP_OBJECT_METHODS
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition:
object_macros.h:25
IMP::base::Vector< ParticlePair >
IMP::kernel::ParticleInputs::do_get_inputs
virtual ModelObjectsTemp do_get_inputs(kernel::Model *m, const ParticleIndexes &pis) const
IMP::kernel::Particle
Class to handle individual model particles.
Definition:
kernel/Particle.h:37
IMP::base::Index< ParticleIndexTag >
IMP::core::ClosePairsFinder::get_close_pairs
kernel::ParticlePairsTemp get_close_pairs(const kernel::ParticlesTemp &pc) const
ClosePairsFinder.h
A base class for algorithms to detect proximities.
IMP::core::QuadraticClosePairsFinder
Find all nearby pairs by testing all pairs.
Definition:
QuadraticClosePairsFinder.h:19
IMP_OVERRIDE
#define IMP_OVERRIDE
Cause a compile error if this method does not override a parent method.
Definition:
compiler_macros.h:75
IMP::kernel::Model
Class for storing model, its restraints, constraints, and particles.
Definition:
kernel/Model.h:73