PartitionalClusteringWithCenter.h

Go to the documentation of this file.

/**
 *  \file IMP/statistics/PartitionalClusteringWithCenter.h
 *  \brief Cluster sets of points.
 *
 *  Copyright 2007-2014 IMP Inventors. All rights reserved.
 *
 */

#ifndef IMPSTATISTICS_PARTITIONAL_CLUSTERING_WITH_CENTER_H
#define IMPSTATISTICS_PARTITIONAL_CLUSTERING_WITH_CENTER_H

#include <IMP/statistics/statistics_config.h>
#include "PartitionalClustering.h"

IMPSTATISTICS_BEGIN_NAMESPACE
/** In addition to the information in the Clustering base class,
    PartitionalClusteringWithCenter stores a cluster center for
    each cluster.
    The cluster center is a point in the space defined by the
    embedding.

    The representative for each cluster is the member whose
    location in the embedding is closest to the cluster center.
*/
class IMPSTATISTICSEXPORT PartitionalClusteringWithCenter
    : public PartitionalClustering {
  IMP::base::Vector<Ints> clusters_;
  Ints reps_;
  algebra::VectorKDs centers_;

 public:
#if !defined(SWIG) && !defined(IMP_DOXYGEN)
  template <int D>
  PartitionalClusteringWithCenter(
      const IMP::base::Vector<Ints> &clusters,
      const IMP::base::Vector<algebra::VectorD<D> > &centers, const Ints &reps)
      : PartitionalClustering("k-means"),
        clusters_(clusters),
        reps_(reps),
        centers_(reps.size()) {
    for (unsigned int i = 0; i < centers_.size(); ++i) {
      centers_[i] = algebra::VectorKD(centers[i].begin(), centers[i].end());
    }
  }
#endif
  const algebra::VectorKD &get_cluster_center(unsigned int i) const {
    return centers_[i];
  }
  unsigned int get_number_of_clusters() const IMP_OVERRIDE;
  const Ints &get_cluster(unsigned int i) const IMP_OVERRIDE;
  int get_cluster_representative(unsigned int i) const IMP_OVERRIDE;

  IMP_OBJECT_METHODS(PartitionalClusteringWithCenter);
};

IMPSTATISTICS_END_NAMESPACE

#endif /* IMPSTATISTICS_PARTITIONAL_CLUSTERING_WITH_CENTER_H */