IMP  2.2.1
The Integrative Modeling Platform
IMP::gsl Namespace Reference

See IMP.gsl for more information.

Classes

class  ConjugateGradients
 A conjugate gradients optimizer taken from GSL. More...
 
class  GSLOptimizer
 A base class for GSL-based optimizers. More...
 
class  QuasiNewton
 A quasi-Newton optimizer taken from GSL. More...
 
class  Simplex
 A simplex optimizer taken from GSL. More...
 

Typedefs

typedef IMP::base::Vector
< IMP::base::Pointer
< GSLOptimizer > > 
GSLOptimizers
 
typedef IMP::base::Vector
< IMP::base::WeakPointer
< GSLOptimizer > > 
GSLOptimizersTemp
 

Functions

std::string get_data_path (std::string file_name)
 Return the full path to installed data. More...
 
std::string get_example_path (std::string file_name)
 Return the path to installed example data for this module. More...
 

Standard module methods

All IMP modules have a set of standard methods to help get information about the module and about files associated with the module.

std::string get_module_version ()
 
std::string get_module_name ()
 

Typedef Documentation

Store a set of objects.

Definition at line 56 of file GSLOptimizer.h.

Pass a set of objects. See GSLOptimizer

Definition at line 56 of file GSLOptimizer.h.

Function Documentation

std::string IMP::gsl::get_data_path ( std::string  file_name)

Each module has its own data directory, so be sure to use the version of this function in the correct module. To read the data file "data_library" that was placed in the data directory of module "mymodule", do something like

std::ifstream in(IMP::mymodule::get_data_path("data_library"));

This will ensure that the code works when IMP is installed or used via the setup_environment.sh script.

std::string IMP::gsl::get_example_path ( std::string  file_name)

Each module has its own example directory, so be sure to use the version of this function in the correct module. For example to read the file example_protein.pdb located in the examples directory of the IMP::atom module, do

model));

This will ensure that the code works when IMP is installed or used via the setup_environment.sh script.