kernel/decorator_macros.h File Reference

Various general useful macros for IMP. More...

#include <IMP/kernel/kernel_config.h>
#include "particle_index.h"
#include "Particle.h"
#include "Decorator.h"
#include <IMP/base/check_macros.h>
#include <IMP/base/log_macros.h>
#include <IMP/base/showable_macros.h>
#include <IMP/base/warning_macros.h>

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Macros
#define	IMP_CHECK_DECORATOR(Name, function)   IMP::kernel::internal::ParticleCheck Name##pc(Name::get_is_setup, function);
#define	IMP_CONSTRAINT_DECORATOR_DECL(Name)
#define	IMP_CONSTRAINT_DECORATOR_DEF(Name)
#define	IMP_DECORATOR_GET(AttributeKey, Type, has_action, not_has_action)
	Perform actions dependent on whether a particle has an attribute. More...
#define	IMP_DECORATOR_GET_SET(name, AttributeKey, Type, ReturnType)
	Define methods for getting and setting a particular simple field. More...
#define	IMP_DECORATOR_GET_SET_OPT(name, AttributeKey, Type, ReturnType, default_value)
	Define methods for getting and setting an optional simple field. More...
#define	IMP_DECORATOR_METHODS(Name, Parent)
#define	IMP_DECORATOR_SET(AttributeKey, value)
	Set an attribute, creating it if it does not already exist. More...
#define	IMP_DECORATOR_SETUP_0(Name)
#define	IMP_DECORATOR_SETUP_1(Name, FirstArgumentType, first_argument_name)
#define	IMP_DECORATOR_SETUP_2(Name, FirstArgumentType, first_argument_name,SecondArgumentType, second_argument_name)
#define	IMP_DECORATOR_SETUP_3(Name, FirstArgumentType, first_argument_name,SecondArgumentType, second_argument_name,ThirdArgumentType, third_argument_name)
#define	IMP_DECORATOR_SETUP_4(Name, FirstArgumentType, first_argument_name,SecondArgumentType, second_argument_name,ThirdArgumentType, third_argument_name,FourthArgumentType, fourth_argument_name)
#define	IMP_DECORATOR_TRAITS_SETUP_0(Name)
#define	IMP_DECORATOR_TRAITS_SETUP_1(Name, FirstArgumentType,first_argument_name)
#define	IMP_DECORATOR_TRAITS_SETUP_2(Name, FirstArgumentType,first_argument_name, SecondArgumentType, second_argument_name)
#define	IMP_DECORATOR_WITH_TRAITS_METHODS(Name, Parent, TraitsType,traits_name, default_traits)
#define	IMP_DECORATORS(Name, PluralName, Parent)
	Define the types for storing sets of decorators. More...
#define	IMP_DECORATORS_DECL(Name, PluralName)
#define	IMP_DECORATORS_DEF(Name, PluralName)
#define	IMP_DECORATORS_WITH_TRAITS(Name, PluralName, Parent)
	Define the types for storing sets of decorators. More...
#define	IMP_SUMMARIZE_DECORATOR_DECL(Name, Parent, Members, SetupDoc)
	Create a decorator that computes some sort of summary info on a set. More...
#define	IMP_SUMMARIZE_DECORATOR_DEF(Name, Parent, Members,create_pre_modifier,create_post_modifier)
#define	IMP_SUMMARY_DECORATOR_DECL(Name, Parent, Members)
#define	IMP_SUMMARY_DECORATOR_DEF(Name, Parent, Members, create_pre_modifier)

Detailed Description

Copyright 2007-2014 IMP Inventors. All rights reserved.

Definition in file kernel/decorator_macros.h.

Macro Definition Documentation

#define IMP_CHECK_DECORATOR	(		Name,
			function
	)		IMP::kernel::internal::ParticleCheck Name##pc(Name::get_is_setup, function);

Register a function that can be used to check that the particle is valid with respect to the decorator. The function should take a Particle* as an argument and return a bool. It should throw an exception if something is wrong.

This macro should only be used in a .cpp file.

Definition at line 467 of file kernel/decorator_macros.h.

#define IMP_CONSTRAINT_DECORATOR_DECL

(

Name

)

Declares Decorator methods that allows (privately) setting a constraint and publicly getting that constraint

Definition at line 411 of file kernel/decorator_macros.h.

#define IMP_CONSTRAINT_DECORATOR_DEF

(

Name

)

Defines Decorator methods that allows (privately) setting a constraint and publicly getting that constraint. The constraint is added as a score state to the model.

Definition at line 435 of file kernel/decorator_macros.h.

#define IMP_DECORATOR_GET	(		AttributeKey,
			Type,
			has_action,
			not_has_action
	)

A common pattern is to check if a particle has a particular attribute, do one thing if it does and another if it does not. This macro implements that pattern. It requires that the method get_particle() return the particle being used.

Parameters

[in]	AttributeKey	The key for the attribute
[in]	Type	The type for the attribute ("Int", "Float", "String")
[in]	has_action	The action to take if the Particle has the attribute. The attribute value is stored in the variable VALUE.
[in]	not_has_action	The action to take if the Particle does not have the attribute.

See Also

IMP_DECORATOR_GET()

IMP_DECORATOR_GET_SET()

Definition at line 305 of file kernel/decorator_macros.h.

#define IMP_DECORATOR_GET_SET	(		name,
			AttributeKey,
			Type,
			ReturnType
	)

This macro defines methods to get and set a particular attribute.

Parameters

[in]	name	The lower case name of the attribute
[in]	AttributeKey	The AttributeKey object controlling the attribute.
[in]	Type	The type of the attribute (upper case).
[in]	ReturnType	The type to return from the get.

See Also

IMP_DECORATOR_GET()

IMP_DECORATOR_SET()

Definition at line 343 of file kernel/decorator_macros.h.

#define IMP_DECORATOR_GET_SET_OPT	(		name,
			AttributeKey,
			Type,
			ReturnType,
			default_value
	)

See IMP_DECORATOR_GET_SET(). The difference is that here you can provide a default value to use if the decorator does not have the attribute.

Parameters

[in]	name	The lower case name of the attribute
[in]	AttributeKey	The expression to get the required attribute key.
[in]	Type	The type of the attribute (upper case).
[in]	ReturnType	The type to return from the get.
[in]	default_value	The value returned if the attribute is missing.

Definition at line 363 of file kernel/decorator_macros.h.

#define IMP_DECORATOR_METHODS	(		Name,
			Parent
	)

Implement the needed methods for a decorator based on

• setup_particle()
• get_is_setup() methods that you provide.

Definition at line 27 of file kernel/decorator_macros.h.

#define IMP_DECORATOR_SET	(		AttributeKey,
			value
	)

Another common pattern is to have an assumed value if the attribute is not there. Then, you sometimes need to set the value whether it is there or not.

See Also

IMP_DECORATOR_GET()

IMP_DECORATOR_GET_SET()

Definition at line 323 of file kernel/decorator_macros.h.

#define IMP_DECORATOR_SETUP_0

(

Name

)

Decorators need to be able to be set up from Particles, ParticleIndexes and other Decorators. To help keep things uniform, we provide macros to declare the setup functions. These macros expect that an appropriate do_setup_particle(kernel::Model *, ParticleIndex, args...) function is defined. But any docs needed before the macro invocation.

Definition at line 126 of file kernel/decorator_macros.h.

#define IMP_DECORATOR_SETUP_1	(		Name,
			FirstArgumentType,
			first_argument_name
	)

See Also

IMP_DECORATOR_SETUP_0()

Definition at line 140 of file kernel/decorator_macros.h.

#define IMP_DECORATOR_SETUP_2	(		Name,
			FirstArgumentType,
			first_argument_name,
			SecondArgumentType,
			second_argument_name
	)

See Also

IMP_DECORATOR_SETUP_0()

Definition at line 159 of file kernel/decorator_macros.h.

#define IMP_DECORATOR_SETUP_3	(		Name,
			FirstArgumentType,
			first_argument_name,
			SecondArgumentType,
			second_argument_name,
			ThirdArgumentType,
			third_argument_name
	)

See Also

IMP_DECORATOR_SETUP_0()

Definition at line 179 of file kernel/decorator_macros.h.

#define IMP_DECORATOR_SETUP_4	(		Name,
			FirstArgumentType,
			first_argument_name,
			SecondArgumentType,
			second_argument_name,
			ThirdArgumentType,
			third_argument_name,
			FourthArgumentType,
			fourth_argument_name
	)

See Also

IMP_DECORATOR_SETUP_0()

Definition at line 203 of file kernel/decorator_macros.h.

#define IMP_DECORATOR_TRAITS_SETUP_0

(

Name

)

Decorators need to be able to be set up from Particles, ParticleIndexes and other Decorators. To help keep things uniform, we provide macros to declare the setup functions. These macros expect that an appropriate do_setup_particle(kernel::Model *, ParticleIndex, args...) function is defined. But any docs needed before the macro invocation.

Definition at line 237 of file kernel/decorator_macros.h.

#define IMP_DECORATOR_TRAITS_SETUP_1	(		Name,
			FirstArgumentType,
			first_argument_name
	)

See Also

IMP_DECORATOR_TRAITS_SETUP_0()

Definition at line 252 of file kernel/decorator_macros.h.

#define IMP_DECORATOR_TRAITS_SETUP_2	(		Name,
			FirstArgumentType,
			first_argument_name,
			SecondArgumentType,
			second_argument_name
	)

See Also

IMP_DECORATOR_TRAITS_SETUP_0()

Definition at line 269 of file kernel/decorator_macros.h.

#define IMP_DECORATOR_WITH_TRAITS_METHODS	(		Name,
			Parent,
			TraitsType,
			traits_name,
			default_traits
	)

Implement the needed methods for a decorator based on

• setup_particle()
• get_is_setup() methods that you provide.

Definition at line 68 of file kernel/decorator_macros.h.

#define IMP_DECORATORS	(		Name,
			PluralName,
			Parent
	)

Value:

IMP_DECORATORS_DECL(Name, PluralName);         \
  IMP_DECORATORS_DEF(Name, PluralName)

The macro defines the types PluralName and PluralNameTemp.

Definition at line 391 of file kernel/decorator_macros.h.

#define IMP_DECORATORS_DECL	(		Name,
			PluralName
	)

Value:

class Name;                                 \
  typedef IMP::base::Vector<Name> PluralName

Definition at line 373 of file kernel/decorator_macros.h.

#define IMP_DECORATORS_WITH_TRAITS	(		Name,
			PluralName,
			Parent
	)

The macro defines the types PluralName and PluralNameTemp.

Definition at line 398 of file kernel/decorator_macros.h.

#define IMP_SUMMARIZE_DECORATOR_DECL	(		Name,
			Parent,
			Members,
			SetupDoc
	)

Examples include a centroid or a cover for a set of particles.

Parameters

[in]	Name	The name for the decorator
[in]	Parent	the parent decorator type
[in]	Members	the way to pass a set of particles in
[in]	SetupDoc	extra documentation for setup

Definition at line 479 of file kernel/decorator_macros.h.

#define IMP_SUMMARIZE_DECORATOR_DEF	(		Name,
			Parent,
			Members,
			create_pre_modifier,
			create_post_modifier
	)

See IMP_SUMMARIZE_DECORATOR_DECL()

Parameters

[in]	Name	The name for the decorator
[in]	Parent	the parent decorator type
[in]	Members	the way to pass a set of particles in
[in]	create_pre_modifier	the statements to create the SingletonModifier which computes the summary info, using refiner 'ref'
[in]	create_post_modifier	a SingletonDerivativeModifier for the derivatives of the summary back to its members, using refiner 'ref'

Definition at line 533 of file kernel/decorator_macros.h.

#define IMP_SUMMARY_DECORATOR_DECL	(		Name,
			Parent,
			Members
	)

Value:

IMPKERNEL_DEPRECATED_MACRO (2.2,                                     \
                 "Use IMP_SUMMARY_DECORATOR_DECL instead"); \
   IMP_SUMMARIZE_DECORATOR_DECL(Name, Parent, Member, )

Provided for backward compatability - use IMP_SUMMARIZE_DECORATOR_DECL instead.

Definition at line 563 of file kernel/decorator_macros.h.

#define IMP_SUMMARY_DECORATOR_DEF	(		Name,
			Parent,
			Members,
			create_pre_modifier
	)

See IMP_SUMMARY_DECORATOR_DECL()

Parameters

[in]	Name	The name for the decorator
[in]	Parent	the parent decorator type
[in]	Members	the way to pass a set of particles in
[in]	create_pre_modifier	the statements to create the modifier which computes the summary info. It should be called 'mod', and use the refiner 'ref'

Definition at line 577 of file kernel/decorator_macros.h.