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IMP
2.2.1
The Integrative Modeling Platform
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IMP
2.2.1
The Integrative Modeling Platform
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Super class for simple IMP application test cases. More...
Inheritance diagram for IMP.test.ApplicationTestCase:Public Member Functions | |
| def | assertApplicationExitedCleanly |
| Assert that the application exited cleanly (return value = 0). More... | |
| def | import_python_application |
| Import an installed Python application, rather than running it. More... | |
| def | read_shell_commands |
| Read and return a set of shell commands from a doxygen file. More... | |
| def | run_application |
| Run an application with the given list of arguments. More... | |
| def | run_python_application |
| Run a Python application with the given list of arguments. More... | |
| def | run_script |
| Run an application with the given list of arguments. More... | |
| def | run_shell_command |
| Print and run a shell command, as returned by read_shell_commands() | |
| Public Member Functions inherited from IMP.test.TestCase | |
| def | assertClassNames |
| Check that all the classes in the module follow the imp naming conventions. More... | |
| def | assertFunctionNames |
| Check that all the functions in the module follow the imp naming conventions. More... | |
| def | assertShow |
| Check that all the classes in modulename have a show method. | |
| def | assertValueObjects |
| Check that all the C++ classes in the module are values or objects. More... | |
| def | assertXYZDerivativesInTolerance |
| Assert that x,y,z analytical derivatives match numerical within a tolerance, or a percentage (of the analytical value), whichever is larger. More... | |
| def | check_runnable_python_module |
| Check a Python module designed to be runnable with 'python -m' to make sure it supports standard command line options. More... | |
| def | check_unary_function_deriv |
| Check the unary function func's derivatives against numerical approximations between lb and ub. | |
| def | check_unary_function_min |
| Make sure that the minimum of the unary function func over the range between lb and ub is at expected_fmin. | |
| def | create_particles_in_box |
| Create a bunch of particles in a box. | |
| def | create_point_particle |
| Make a particle with optimizable x, y and z attributes, and add it to the model. More... | |
| def | failure_probability |
| Estimate how likely a given block of code is to raise an AssertionError. More... | |
| def | get_input_file_name |
| Get the full name of an input file in the top-level test directory. More... | |
| def | get_tmp_file_name |
| Get the full name of an output file in the build/tmp directory. More... | |
| def | open_input_file |
| Open and return an input file in the top-level test directory. More... | |
| def | particle_distance |
| Return distance between two given particles. | |
| def | probabilistic_test |
| Help handle a test which is expected to fail some fraction of the time. More... | |
| def | randomize_particles |
| Randomize the xyz coordinates of a list of particles. | |
| def | run_example |
| Run the named example script. More... | |
| def | run_python_module |
| Run a Python module as if with "python -m <modname>", with the given list of arguments as sys.argv. More... | |
Definition at line 961 of file test/__init__.py.
| def IMP.test.ApplicationTestCase.assertApplicationExitedCleanly | ( | self, | |
| ret, | |||
| error | |||
| ) |
Definition at line 1015 of file test/__init__.py.
| def IMP.test.ApplicationTestCase.import_python_application | ( | self, | |
| app | |||
| ) |
This is useful to directly test components of the application.
Definition at line 1000 of file test/__init__.py.
| def IMP.test.ApplicationTestCase.read_shell_commands | ( | self, | |
| doxfile | |||
| ) |
Each command is assumed to be in a
block. The doxygen file is specified relative to the test file itself. This is used to make sure the commands shown in an application example actually work (the testcase can also check the resulting files for correctness).
Definition at line 1025 of file test/__init__.py.
| def IMP.test.ApplicationTestCase.run_application | ( | self, | |
| app, | |||
| args | |||
| ) |
Definition at line 973 of file test/__init__.py.
| def IMP.test.ApplicationTestCase.run_python_application | ( | self, | |
| app, | |||
| args | |||
| ) |
The Python application should be self-runnable (i.e. it should be executable and with a #! on the first line).
Definition at line 986 of file test/__init__.py.
| def IMP.test.ApplicationTestCase.run_script | ( | self, | |
| app, | |||
| args | |||
| ) |
Definition at line 1008 of file test/__init__.py.