IMP  2.2.1
The Integrative Modeling Platform
IMP::statistics::ConfigurationSetXYZEmbedding Class Reference

Embed a configuration using the XYZ coordinates of a set of particles. More...

#include <IMP/statistics/embeddings.h>

+ Inheritance diagram for IMP::statistics::ConfigurationSetXYZEmbedding:

Public Member Functions

 ConfigurationSetXYZEmbedding (ConfigurationSet *cs, SingletonContainerAdaptor pi, bool align=false)
 
unsigned int get_number_of_items () const
 
algebra::VectorKD get_point (unsigned int i) const
 
virtual std::string get_type_name () const
 
virtual ::IMP::base::VersionInfo get_version_info () const
 Get information about the module and version of the object.
 
- Public Member Functions inherited from IMP::statistics::Embedding
virtual algebra::VectorKDs get_points () const
 
double get_weight (unsigned int i) const
 
- Public Member Functions inherited from IMP::base::Object
virtual void clear_caches ()
 
virtual void do_destroy ()
 
CheckLevel get_check_level () const
 
LogLevel get_log_level () const
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 

Additional Inherited Members

- Protected Member Functions inherited from IMP::statistics::Embedding
 Embedding (std::string name)
 
virtual double do_get_weight (unsigned int i) const
 By default return 1.0.
 
- Protected Member Functions inherited from IMP::base::Object
 Object (std::string name)
 Construct an object with the given name. More...
 

Detailed Description

The point for each configuration of the model is a concatenation of the Cartesian coordinates of the particles contained in the passed SingletonContainer.

See ConfigurationSet for more information about the input.

Definition at line 28 of file embeddings.h.

Constructor & Destructor Documentation

IMP::statistics::ConfigurationSetXYZEmbedding::ConfigurationSetXYZEmbedding ( ConfigurationSet cs,
SingletonContainerAdaptor  pi,
bool  align = false 
)

If align is true, all the configurations are rigidly aligned with the first before generating their coordinates.


The documentation for this class was generated from the following file: