IMP  2.2.1
The Integrative Modeling Platform
IMP::kernel::QuadContainer Class Referenceabstract

A shared container for Quads. More...

#include <IMP/kernel/QuadContainer.h>

+ Inheritance diagram for IMP::kernel::QuadContainer:

Public Types

typedef kernel::ParticleIndexQuad ContainedIndexType
 
typedef kernel::ParticleIndexQuads ContainedIndexTypes
 
typedef kernel::ParticleQuad ContainedType
 
typedef kernel::ParticleQuadsTemp ContainedTypes
 
typedef QuadModifier Modifier
 
typedef const
kernel::ParticleIndexQuad
PassContainedIndexType
 

Public Member Functions

void apply (const QuadModifier *sm) const
 Apply a SingletonModifier to the contents.
 
void apply_generic (const QuadModifier *m) const
 Just use apply() in the base class.
 
const kernel::ParticleIndexQuadsget_contents () const
 
virtual kernel::ParticleIndexQuads get_indexes () const =0
 
unsigned int get_number_of_particle_quads () const
 
kernel::ParticleQuad get_particle_quad (unsigned int i) const
 
kernel::ParticleQuadsTemp get_particle_quads () const
 
virtual kernel::ParticleIndexQuads get_range_indexes () const =0
 
- Public Member Functions inherited from IMP::kernel::Container
ModelObjectsTemp do_get_outputs () const
 containers don't have outputs
 
virtual ParticleIndexes get_all_possible_indexes () const =0
 Get contained particles. More...
 
std::size_t get_contents_hash () const
 
virtual bool get_is_decomposable () const
 
- Public Member Functions inherited from IMP::kernel::ModelObject
 ModelObject (kernel::Model *m, std::string name)
 
bool get_has_dependencies () const
 Return whether this object has dependencies computed.
 
bool get_has_required_score_states () const
 
ModelObjectsTemp get_inputs () const
 
ModelObjectsTemps get_interactions () const
 
Modelget_model () const
 
ModelObjectsTemp get_outputs () const
 
const ScoreStatesTempget_required_score_states () const
 
void set_has_dependencies (bool tf)
 
void set_has_required_score_states (bool tf)
 
- Public Member Functions inherited from IMP::base::Object
virtual void clear_caches ()
 
virtual void do_destroy ()
 
CheckLevel get_check_level () const
 
LogLevel get_log_level () const
 
virtual VersionInfo get_version_info () const
 Get information about the module and version of the object.
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 
virtual std::string get_type_name () const
 

Protected Member Functions

 QuadContainer (kernel::Model *m, std::string name="QuadContainer %1%")
 
virtual void do_apply (const QuadModifier *sm) const =0
 
virtual bool do_get_provides_access () const
 
- Protected Member Functions inherited from IMP::kernel::Container
 Container (kernel::Model *m, std::string name="Container %1%")
 
virtual std::size_t do_get_contents_hash () const =0
 
- Protected Member Functions inherited from IMP::kernel::ModelObject
virtual ModelObjectsTemp do_get_inputs () const =0
 
virtual ModelObjectsTemps do_get_interactions () const
 
virtual void handle_set_has_required_score_states (bool)
 
- Protected Member Functions inherited from IMP::base::Object
 Object (std::string name)
 Construct an object with the given name. More...
 

Detailed Description

Stores a shared collection of Quads.

Definition at line 37 of file kernel/QuadContainer.h.

Member Function Documentation

virtual kernel::ParticleIndexQuads IMP::kernel::QuadContainer::get_indexes ( ) const
pure virtual

Get all the indexes contained in the container.

This should be protected but isn't for compatibility reasons.

External callers should use get_contents().

unsigned int IMP::kernel::QuadContainer::get_number_of_particle_quads ( ) const
Deprecated:
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. This can be very slow and is probably not useful
kernel::ParticleQuad IMP::kernel::QuadContainer::get_particle_quad ( unsigned int  i) const
Deprecated:
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP.Use get_indexes() instead and thing about using the IMP_CONTAINER_FOREACH() macro.
kernel::ParticleQuadsTemp IMP::kernel::QuadContainer::get_particle_quads ( ) const
Deprecated:
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_indexes() instead.
virtual kernel::ParticleIndexQuads IMP::kernel::QuadContainer::get_range_indexes ( ) const
pure virtual

Get all the indexes that might possibly be contained in the container, useful with dynamic containers. For example, with a container::ClosePairContainer, this is the list of all pairs taken from input list (those that are far apart in addition to those that are close).


The documentation for this class was generated from the following file: