IMP  2.2.1
The Integrative Modeling Platform
IMP.isd.TuneRex.CvEstimator Class Reference

When created, estimates the heat capacity from the energies or from the indicator functions using the specified method. More...

Public Member Functions

def estimate_cv_constant
 try to guess which constant cv fits best
 
def estimate_cv_interpolate
 interpolate using previous values, by reversing the approximate overlap function
 
def estimate_cv_mbar
 use MBAR to get the heat capacity
 
def get_interp
 returns the point estimate of the first derivative of the energy with respect to the replica exchange parameter (usually T or q). More...
 
def get_mbar
 returns the point estimate of the first derivative of the energy with respect to the replica exchange parameter (usually T or q). More...
 
def mean_interp
 estimate the mean of Cv between two points. More...
 

Detailed Description

Two methods are then available to guess the heat capacity at a given parameter value: get() returns a single point, and mean() returns the linear average between two points.

Note
This class is only available in Python.

Definition at line 219 of file TuneRex.py.

Member Function Documentation

def IMP.isd.TuneRex.CvEstimator.get_interp (   self,
  param 
)

This version assumes that the means of cv are given.

Definition at line 332 of file TuneRex.py.

def IMP.isd.TuneRex.CvEstimator.get_mbar (   self,
  param 
)

This version assumes that the values of cv are given.

Definition at line 340 of file TuneRex.py.

def IMP.isd.TuneRex.CvEstimator.mean_interp (   self,
  pa,
  pb 
)

Here the means were stored previously

Definition at line 348 of file TuneRex.py.


The documentation for this class was generated from the following file: