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IMP
2.2.1
The Integrative Modeling Platform
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IMP
2.2.1
The Integrative Modeling Platform
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Covariance function. More...
#include <IMP/isd/bivariate_functions.h>
Inheritance diagram for IMP::isd::Covariance1DFunction:Public Member Functions | |
| Covariance1DFunction (kernel::Particle *tau, kernel::Particle *ilambda, double alpha=2.0, double jitter=0.0, double cutoff=1e-7) | |
| void | add_to_derivatives (const Floats &x1, const Floats &x2, DerivativeAccumulator &accum) const |
| update derivatives of particles | |
| void | add_to_particle_derivative (unsigned particle_no, double value, DerivativeAccumulator &accum) const |
| update derivatives of particles | |
| IMP_Eigen::MatrixXd | get_derivative_matrix (unsigned particle_no, const FloatsList &xlist) const |
| return derivative matrix | |
| FloatsList | get_derivative_matrix (unsigned particle_no, const FloatsList &xlist, bool) const |
| ContainersTemp | get_input_containers () const |
| kernel::ParticlesTemp | get_input_particles () const |
| particle manipulation | |
| unsigned | get_ndims_x1 () const |
| returns the number of input dimensions | |
| unsigned | get_ndims_x2 () const |
| unsigned | get_ndims_y () const |
| returns the number of output dimensions | |
| unsigned | get_number_of_optimized_particles () const |
| returns the number of particles that are optimized | |
| unsigned | get_number_of_particles () const |
| returns the number of particles that this function uses | |
| bool | get_particle_is_optimized (unsigned particle_no) const |
| returns true if the particle whose index is provided is optimized | |
| IMP_Eigen::MatrixXd | get_second_derivative_matrix (unsigned particle_a, unsigned particle_b, const FloatsList &xlist) const |
| return second derivative matrix | |
| FloatsList | get_second_derivative_matrix (unsigned particle_a, unsigned particle_b, const FloatsList &xlist, bool) const |
| virtual std::string | get_type_name () const |
| virtual ::IMP::base::VersionInfo | get_version_info () const |
| Get information about the module and version of the object. | |
| bool | has_changed () const |
| return true if internal parameters have changed. | |
| Floats | operator() (const Floats &x1, const Floats &x2) const |
| evaluate the function at a certain point | |
| IMP_Eigen::MatrixXd | operator() (const IMP::FloatsList &xlist) const |
| evaluate the function at a list of points | |
| FloatsList | operator() (const IMP::FloatsList &xlist, bool) const |
| used for testing only | |
| void | update () |
| update internal parameters | |
| Public Member Functions inherited from IMP::isd::BivariateFunction | |
| BivariateFunction (std::string str) | |
| Public Member Functions inherited from IMP::base::Object | |
| virtual void | clear_caches () |
| virtual void | do_destroy () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Additional Inherited Members | |
| Protected Member Functions inherited from IMP::base::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
Definition at line 119 of file bivariate_functions.h.