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IMP
2.2.1
The Integrative Modeling Platform
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IMP
2.2.1
The Integrative Modeling Platform
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Class that produces analysis-related output, and is able to parse the output of a file produced by the Statistics class. More...
Public Member Functions | |
| def | add_data |
| adds data point to hierarchy | |
| def | create_entry |
| adds a new entry to the hierarchy by parsing a title entry | |
| def | dump |
| "dump float data from history h to file dest. More... | |
| def | histogram |
| plots histogram of datum (cat,name) from hierarchy h, optionnally specifying a range. More... | |
| def | plot |
| plots datum (cat,name) from hierarchy h, optionnally specifying a range. More... | |
| def | read_AMBER_stats |
| reads an AMBER mden file and returns a History instance | |
| def | read_AMBER_variables |
| reads an AMBER mden file and returns variables present in it | |
| def | read_stats |
| reads a *_stats.txt file and returns a History instance | |
| def | read_variables |
| reads a *_stats.txt file and returns variables present in it | |
Definition at line 8 of file Analysis.py.
| def IMP.isd.Analysis.Analysis.dump | ( | self, | |
| h, | |||
| dest, | |||
| args | |||
| ) |
args can be either strings corresponding to categories, or tuples corresponding to entries of a certain category. Only one counter will be output for the whole dump, it corresponds to the counter of the first entry's category. You can always specify additional counters if needed.
Definition at line 150 of file Analysis.py.
| def IMP.isd.Analysis.Analysis.histogram | ( | self, | |
| h, | |||
| datums, | |||
| kwargs | |||
| ) |
To plot multiple data at the same time, add them sequentially.
Definition at line 138 of file Analysis.py.
| def IMP.isd.Analysis.Analysis.plot | ( | self, | |
| h, | |||
| datums, | |||
| kwargs | |||
| ) |
To plot multiple data at the same time, add them sequentially. Takes x axis from the 'step' entry of the first datum. TODO.
Definition at line 122 of file Analysis.py.