#include <IMP/domino/subset_scores.h>

Inheritance diagram for IMP::domino::RestraintCache:

Public Member Functions
	RestraintCache (ParticleStatesTable *pst, unsigned int size=std::numeric_limits< unsigned int >::max())

void	add_restraints (const kernel::RestraintsAdaptor &rs)

double	get_hit_rate () const

unsigned int	get_number_of_entries () const

kernel::RestraintsTemp	get_restraints (const Subset &s, const Subsets &exclusions) const

kernel::RestraintsTemp	get_restraints () const

double	get_score (kernel::Restraint *r, const Assignment &a) const
	Get the score of a set or restraint. More...

double	get_score (kernel::Restraint *r, const Subset &s, const Assignment &a) const

Slice	get_slice (kernel::Restraint *r, const Subset &s) const

virtual std::string	get_type_name () const

virtual ::IMP::base::VersionInfo	get_version_info () const
	Get information about the module and version of the object.

void	load_cache (const kernel::ParticlesTemp &ps, RMF::HDF5::ConstGroup group)

void	load_last_score (kernel::Restraint *r, const Subset &s, const Assignment &a)
	Make it so kernel::Restraint::get_last_score() returns the score. More...

void	save_cache (const kernel::ParticlesTemp &particle_ordering, const kernel::RestraintsTemp &restraints, RMF::HDF5::Group group, unsigned int max_entries)

void	show_restraint_information (std::ostream &out=std::cout) const

void	validate () const

Public Member Functions inherited from IMP::base::Object
virtual void	clear_caches ()

virtual void	do_destroy ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Additional Inherited Members
Protected Member Functions inherited from IMP::base::Object
	Object (std::string name)
	Construct an object with the given name. More...

Detailed Description

Implement a cache for restraint scores as well as management of restraints for domino.

The cache size passed to the constructor is the maximum number of scores that will be saved. A least-recently-used eviction policy is used when that number is exceeded.

Definition at line 37 of file subset_scores.h.

Member Function Documentation

void IMP::domino::RestraintCache::add_restraints ( const kernel::RestraintsAdaptor & rs )

Recursively process the passed restraints (and sets) so all contained restraints and sets that have maximum are known.

unsigned int IMP::domino::RestraintCache::get_number_of_entries ( ) const

Return the number of entries currently in the cache.

Definition at line 219 of file subset_scores.h.

kernel::RestraintsTemp IMP::domino::RestraintCache::get_restraints	(	const Subset &	s,
		const Subsets &	exclusions
	)		const

Return the restraints that should be evaluated for the subset, given the exclusions.

double IMP::domino::RestraintCache::get_score	(	kernel::Restraint *	r,
		const Assignment &	a
	)		const

The returned score will be std::numeric_limits<double>::max() if any of the limits are violated.

The assignment passed is the assignment for the particles used by the restraint, not that for some whole subset. See the other get_score() function for a perhaps more useful one.

Definition at line 176 of file subset_scores.h.

Here is the call graph for this function:

double IMP::domino::RestraintCache::get_score	(	kernel::Restraint *	r,
		const Subset &	s,
		const Assignment &	a
	)		const

Get the score for a restraint given a subset and assignment on that subset.

Slice IMP::domino::RestraintCache::get_slice	(	kernel::Restraint *	r,
		const Subset &	s
	)		const

Return the slice for that restraint given the subset.

void IMP::domino::RestraintCache::load_last_score	(	kernel::Restraint *	r,
		const Subset &	s,
		const Assignment &	a
	)

This is useful when writing the restraints to disk, as that code often goes off the last score to avoid recomputing the restraints.

void IMP::domino::RestraintCache::save_cache	(	const kernel::ParticlesTemp &	particle_ordering,
		const kernel::RestraintsTemp &	restraints,
		RMF::HDF5::Group	group,
		unsigned int	max_entries
	)

This assumes that restraints are always added to the cache in the same order.

Parameters

[in]	particle_ordering	An ordering for the particles.
[in]	restraints	Which restraints to write out entries for. You probably want to use get_restraints() to generate this.
[in]	max_entries	How many entries to write out at most.
[in]	group	Where to put the entries.

void IMP::domino::RestraintCache::show_restraint_information ( std::ostream & out = std::cout ) const

Print out information about the known restraints and restraint sets.

void IMP::domino::RestraintCache::validate ( ) const

Check the entries in the cache.

The documentation for this class was generated from the following file:

subset_scores.h

Public Member Functions

Additional Inherited Members

Detailed Description

Member Function Documentation