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IMP
2.2.1
The Integrative Modeling Platform
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IMP
2.2.1
The Integrative Modeling Platform
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Write a CGO file with the geometry. More...
#include <IMP/display/PymolWriter.h>
Inheritance diagram for IMP::display::PymolWriter:Public Member Functions | |
| PymolWriter (base::TextOutput of) | |
| PymolWriter (std::string name) | |
| PymolWriter (const char *name) | |
| virtual std::string | get_type_name () const |
| virtual ::IMP::base::VersionInfo | get_version_info () const |
| Get information about the module and version of the object. | |
| Public Member Functions inherited from IMP::display::TextWriter | |
| TextWriter (base::TextOutput fn) | |
| Create a writer opening the file with the passed sink. More... | |
| TextWriter (std::string name) | |
| Create a write for a file or files with the passed name or pattern. More... | |
| virtual | ~TextWriter () |
| Write the data and close the file. | |
| std::string | get_current_file_name () const |
| get the name of the current file being writter | |
| Public Member Functions inherited from IMP::display::Writer | |
| Writer (std::string name) | |
| Create a writer opening the file with the passed name. | |
| virtual | ~Writer () |
| Write the data and close the file. | |
| void | set_frame (unsigned int i) |
| int | get_frame () const |
| void | add_geometry (Geometry *g) |
| void | add_geometry (const Geometries &g) |
| Public Member Functions inherited from IMP::base::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Protected Member Functions | |
| virtual void | do_close () |
| A hook for implementation classes to use to take actions on file close. | |
| virtual void | do_destroy () |
| virtual void | do_open () |
| A hook for implementation classes to use to take actions on file open. | |
| Protected Member Functions inherited from IMP::display::TextWriter | |
| std::ostream & | get_stream () |
| Get the stream for inhereting classes to write to. | |
| void | open () |
| Protected Member Functions inherited from IMP::display::GeometryProcessor | |
| virtual bool | handle_anything (Geometry *, Color, std::string) |
| virtual bool | handle_bounding_box (BoundingBoxGeometry *, Color, std::string) |
| virtual bool | handle_ellipsoid (EllipsoidGeometry *, Color, std::string) |
| void | handle_geometry (Geometry *g) |
| virtual bool | handle_surface_mesh (SurfaceMeshGeometry *, Color, std::string) |
| Protected Member Functions inherited from IMP::base::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
The cgo file format is a simple format for displaying geometry in Pymol. The cgo writer supports points, spheres, cyliners, and segments. The file name should end in ".pym".
The geometry is assembled into objects in pymol based on the passed names. For example, all geometry named "box" becomes one pymol object. If many files are loaded into python defining the same objects, they become sequential frames in a movie. The frame numbers are determined sequentially from the file load order (so they can form a subset of the generated files).
This writer will write many frames to the same file.
Definition at line 34 of file PymolWriter.h.
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protectedvirtual |
Overide this method to take action on destruction.
Reimplemented from IMP::base::Object.
Definition at line 59 of file PymolWriter.h.