IMP::core::TransformedDistancePairScore Class Reference

Apply a function to the distance between two particles after transforming the first. More...

#include <IMP/core/TransformedDistancePairScore.h>

Inheritance diagram for IMP::core::TransformedDistancePairScore:

Public Member Functions
	TransformedDistancePairScore (UnaryFunction *f, const algebra::Transformation3D &transformation)
virtual kernel::ModelObjectsTemp	do_get_inputs (kernel::Model *m, const kernel::ParticleIndexes &pis) const
double	evaluate_if_good_indexes (kernel::Model *m, const kernel::ParticleIndexPairs &p, DerivativeAccumulator *da, double max, unsigned int lower_bound, unsigned int upper_bound) const
virtual double	evaluate_index (kernel::Model *m, const kernel::ParticleIndexPair &p, DerivativeAccumulator *da) const
	Compute the score and the derivative if needed.
double	evaluate_indexes (kernel::Model *m, const kernel::ParticleIndexPairs &p, DerivativeAccumulator *da, unsigned int lower_bound, unsigned int upper_bound) const
virtual std::string	get_type_name () const
virtual ::IMP::base::VersionInfo	get_version_info () const
	Get information about the module and version of the object.
void	set_transformation (const algebra::Transformation3D &rot)
Public Member Functions inherited from IMP::kernel::PairScore
	PairScore (std::string name="PairScore %1%")
Restraints	create_current_decomposition (kernel::Model *m, const kernel::ParticleIndexPair &vt) const
virtual double	evaluate (const kernel::ParticlePair &vt, DerivativeAccumulator *da) const
	Compute the score and the derivative if needed. More...
virtual double	evaluate_if_good_index (kernel::Model *m, const kernel::ParticleIndexPair &vt, DerivativeAccumulator *da, double max) const
	Compute the score and the derivative if needed.
Public Member Functions inherited from IMP::kernel::ParticleInputs
virtual ContainersTemp	get_input_containers (Particle *p) const
virtual ParticlesTemp	get_input_particles (Particle *p) const
ModelObjectsTemp	get_inputs (kernel::Model *m, const ParticleIndexes &pis) const
Public Member Functions inherited from IMP::base::Object
virtual void	clear_caches ()
virtual void	do_destroy ()
CheckLevel	get_check_level () const
LogLevel	get_log_level () const
void	set_check_level (CheckLevel l)
void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...
void	set_was_used (bool tf) const
void	show (std::ostream &out=std::cout) const
const std::string &	get_name () const
void	set_name (std::string name)

Additional Inherited Members
Public Types inherited from IMP::kernel::PairScore
typedef kernel::ParticlePair	Argument
typedef kernel::ParticleIndexPair	IndexArgument
typedef PairModifier	Modifier
typedef const kernel::ParticlePair &	PassArgument
typedef const kernel::ParticleIndexPair &	PassIndexArgument
Protected Member Functions inherited from IMP::kernel::PairScore
virtual Restraints	do_create_current_decomposition (kernel::Model *m, const kernel::ParticleIndexPair &vt) const
Protected Member Functions inherited from IMP::base::Object
	Object (std::string name)
	Construct an object with the given name. More...

Detailed Description

Apply a transform to the second particle and then apply the unary function to the distance between the transformed particle and the second. This can be used to implement symmetry restraints.

Definition at line 30 of file TransformedDistancePairScore.h.

Member Function Documentation

virtual kernel::ModelObjectsTemp IMP::core::TransformedDistancePairScore::do_get_inputs ( kernel::Model *  m, const kernel::ParticleIndexes &  pis  ) const

virtual

Overload this method to specify the inputs.

Reimplemented from IMP::kernel::ParticleInputs.

double IMP::core::TransformedDistancePairScore::evaluate_if_good_indexes ( kernel::Model *  m, const kernel::ParticleIndexPairs &  o, DerivativeAccumulator *  da, double  max, unsigned int  lower_bound, unsigned int  upper_bound  ) const

virtual

Implementations for these are provided by the IMP_PAIR_SCORE() macro.

Reimplemented from IMP::kernel::PairScore.

Definition at line 46 of file TransformedDistancePairScore.h.

double IMP::core::TransformedDistancePairScore::evaluate_indexes ( kernel::Model *  m, const kernel::ParticleIndexPairs &  o, DerivativeAccumulator *  da, unsigned int  lower_bound, unsigned int  upper_bound  ) const

virtual

Implementations for these are provided by the IMP_PAIR_SCORE() macro.

Reimplemented from IMP::kernel::PairScore.

Definition at line 46 of file TransformedDistancePairScore.h.

void IMP::core::TransformedDistancePairScore::set_transformation

(

const algebra::Transformation3D &

rot

)

Set the transformation object.

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The documentation for this class was generated from the following file:

• TransformedDistancePairScore.h