IMP  2.2.1
The Integrative Modeling Platform
IMP::atom::CoverBond Class Reference

Cover a bond with a sphere. More...

#include <IMP/atom/CoverBond.h>

+ Inheritance diagram for IMP::atom::CoverBond:

Public Member Functions

virtual void apply_index (kernel::Model *m, kernel::ParticleIndex p) const
 
virtual void apply_indexes (kernel::Model *m, const kernel::ParticleIndexes &o, unsigned int lower_bound, unsigned int upper_bound) const
 
virtual kernel::ModelObjectsTemp do_get_inputs (kernel::Model *m, const kernel::ParticleIndexes &pis) const
 
virtual kernel::ModelObjectsTemp do_get_outputs (kernel::Model *m, const kernel::ParticleIndexes &pis) const
 
virtual std::string get_type_name () const
 
virtual ::IMP::base::VersionInfo get_version_info () const
 Get information about the module and version of the object.
 
- Public Member Functions inherited from IMP::kernel::SingletonModifier
 SingletonModifier (std::string name="SingletonModifier %1%")
 
virtual void apply (kernel::Particle *vt) const
 
- Public Member Functions inherited from IMP::kernel::ParticleInputs
virtual ContainersTemp get_input_containers (Particle *p) const
 
virtual ParticlesTemp get_input_particles (Particle *p) const
 
ModelObjectsTemp get_inputs (kernel::Model *m, const ParticleIndexes &pis) const
 
- Public Member Functions inherited from IMP::kernel::ParticleOutputs
virtual ContainersTemp get_output_containers (Particle *p) const
 
virtual ParticlesTemp get_output_particles (Particle *p) const
 
ModelObjectsTemp get_outputs (kernel::Model *m, const ParticleIndexes &pis) const
 
- Public Member Functions inherited from IMP::base::Object
virtual void clear_caches ()
 
virtual void do_destroy ()
 
CheckLevel get_check_level () const
 
LogLevel get_log_level () const
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 

Additional Inherited Members

- Public Types inherited from IMP::kernel::SingletonModifier
typedef kernel::ParticleArgument
 
typedef kernel::ParticleIndex IndexArgument
 
- Protected Member Functions inherited from IMP::base::Object
 Object (std::string name)
 Construct an object with the given name. More...
 

Detailed Description

This is a version of core::CoverRefined optimized for bonds. It is about 4x faster than the general purpose one.

Definition at line 24 of file CoverBond.h.

Member Function Documentation

virtual void IMP::atom::CoverBond::apply_index ( kernel::Model m,
kernel::ParticleIndex  v 
) const
virtual

Apply the function to a single value

Reimplemented from IMP::kernel::SingletonModifier.

virtual void IMP::atom::CoverBond::apply_indexes ( kernel::Model m,
const kernel::ParticleIndexes o,
unsigned int  lower_bound,
unsigned int  upper_bound 
) const
virtual

Apply the function to a collection of kernel::ParticlesTemp If bounds are passed, only apply to ones between the upper and lower bounds.

Reimplemented from IMP::kernel::SingletonModifier.

Definition at line 34 of file CoverBond.h.

virtual kernel::ModelObjectsTemp IMP::atom::CoverBond::do_get_inputs ( kernel::Model m,
const kernel::ParticleIndexes pis 
) const
virtual

Overload this method to specify the inputs.

Reimplemented from IMP::kernel::ParticleInputs.

virtual kernel::ModelObjectsTemp IMP::atom::CoverBond::do_get_outputs ( kernel::Model m,
const kernel::ParticleIndexes pis 
) const
virtual

Overload this method to specify the outputs.

Reimplemented from IMP::kernel::ParticleOutputs.


The documentation for this class was generated from the following file: