| add_member(ParticleIndex p) | IMP::core::RigidBody | |
| add_non_rigid_member(ParticleIndex pi) | IMP::core::RigidBody | |
| add_to_derivative(int i, Float v, DerivativeAccumulator &d) | IMP::core::XYZ | |
| add_to_derivatives(const algebra::Vector3D &v, DerivativeAccumulator &d) | IMP::core::XYZ | |
| create_compatible_rigid_body(Hierarchy h, Hierarchy reference) | IMP::core::RigidBody | related |
| create_rigid_body(const Hierarchies &h, std::string name=std::string("created rigid body")) | IMP::core::RigidBody | related |
| decorate_particle(::IMP::kernel::Particle *p) (defined in IMP::core::RigidBody) | IMP::core::RigidBody | static |
| Decorator(Model *m, ParticleIndex pi) (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | protected |
| Decorator(Particle *p) (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | protected |
| Decorator() (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | protected |
| Decorator(Particle *p) | IMP::kernel::Decorator | |
| Decorator() | IMP::kernel::Decorator | |
| get_body_member_particle_indexes() const (defined in IMP::core::RigidBody) | IMP::core::RigidBody | |
| get_coordinate(int i) const | IMP::core::XYZ | |
| get_coordinate_key(unsigned int i) (defined in IMP::core::XYZ) | IMP::core::XYZ | static |
| get_coordinates() const | IMP::core::RigidBody | |
| get_coordinates_are_optimized() const (defined in IMP::core::RigidBody) | IMP::core::RigidBody | |
| get_derivative(int i) const | IMP::core::XYZ | |
| get_derivatives() const | IMP::core::XYZ | |
| get_dihedral(XYZ a, XYZ b, XYZ c, XYZ d) | IMP::core::XYZ | related |
| get_distance(XYZ a, XYZ b) | IMP::core::XYZ | related |
| get_member_particle_indexes() const | IMP::core::RigidBody | |
| get_model() const | IMP::kernel::Decorator | |
| get_particle() const | IMP::kernel::Decorator | |
| get_particle_index() const (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | |
| get_reference_frame() const | IMP::core::RigidBody | |
| get_rotational_derivatives() const | IMP::core::RigidBody | |
| get_torque() const | IMP::core::RigidBody | |
| get_vector_to(const XYZ &b) const | IMP::core::XYZ | |
| get_x() const (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| get_xyz_keys() | IMP::core::XYZ | static |
| get_y() const (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| get_z() const (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| normalize_rotation() | IMP::core::RigidBody | |
| particle_is_instance(Particle *p) | IMP::core::RigidBody | static |
| particle_is_instance(Model *m, ParticleIndex pi) | IMP::core::RigidBody | static |
| RigidBody() (defined in IMP::core::RigidBody) | IMP::core::RigidBody | |
| RigidBody(Model *m, ParticleIndex id) (defined in IMP::core::RigidBody) | IMP::core::RigidBody | |
| RigidBody(::IMP::kernel::Particle *p) (defined in IMP::core::RigidBody) | IMP::core::RigidBody | explicit |
| set_coordinate(unsigned int i, Float v) | IMP::core::XYZ | |
| set_coordinates(const algebra::Vector3D &v) | IMP::core::XYZ | |
| set_coordinates_are_optimized(bool tf) | IMP::core::RigidBody | |
| IMP::core::XYZ::set_coordinates_are_optimized(bool tf) const | IMP::core::XYZ | |
| set_is_rigid_member(ParticleIndex pi, bool tf) | IMP::core::RigidBody | |
| set_reference_frame(const IMP::algebra::ReferenceFrame3D &tr) | IMP::core::RigidBody | |
| set_reference_frame_from_members(const ParticleIndexes &members) | IMP::core::RigidBody | |
| set_reference_frame_lazy(const IMP::algebra::ReferenceFrame3D &tr) | IMP::core::RigidBody | |
| set_x(Float t) (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| set_y(Float t) (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| set_z(Float t) (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| setup_particle(Particle *p, const ParticlesTemp &ps) | IMP::core::RigidBody | static |
| setup_particle(Particle *p, const algebra::ReferenceFrame3D &rf) | IMP::core::RigidBody | static |
| IMP::core::XYZ::setup_particle(Model *m, ParticleIndex pi, const algebra::Vector3D v=algebra::Vector3D(0, 0, 0)) | IMP::core::XYZ | static |
| setup_particle(Particle *p, const algebra::Vector3D v=algebra::Vector3D(0, 0, 0)) (defined in IMP::core::XYZ) | IMP::core::XYZ | static |
| show(std::ostream &out=std::cout) const (defined in IMP::core::RigidBody) | IMP::core::RigidBody | |
| teardown_particle(RigidBody rb) | IMP::core::RigidBody | static |
| transform(RigidBody a, const algebra::Transformation3D &tr) | IMP::core::RigidBody | related |
| update_members() | IMP::core::RigidBody | |
| Value() (defined in IMP::base::Value) | IMP::base::Value | protected |
| XYZ() (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| XYZ(Model *m, ParticleIndex id) (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| XYZ(::IMP::kernel::Particle *p) (defined in IMP::core::XYZ) | IMP::core::XYZ | explicit |
| ~RigidBody() (defined in IMP::core::RigidBody) | IMP::core::RigidBody | |