| add_to_derivative(int i, Float v, DerivativeAccumulator &d) | IMP::core::XYZ | |
| add_to_derivatives(const algebra::Vector3D &v, DerivativeAccumulator &d) | IMP::core::XYZ | |
| decorate_particle(::IMP::kernel::Particle *p) (defined in IMP::core::NonRigidMember) | IMP::core::NonRigidMember | static |
| Decorator(Model *m, ParticleIndex pi) (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | protected |
| Decorator(Particle *p) (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | protected |
| Decorator() (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | protected |
| Decorator(Particle *p) | IMP::kernel::Decorator | |
| Decorator() | IMP::kernel::Decorator | |
| get_coordinate(int i) const | IMP::core::XYZ | |
| get_coordinate_key(unsigned int i) (defined in IMP::core::XYZ) | IMP::core::XYZ | static |
| get_coordinates() const | IMP::core::XYZ | |
| get_coordinates_are_optimized() const | IMP::core::XYZ | |
| get_derivative(int i) const | IMP::core::XYZ | |
| get_derivatives() const | IMP::core::XYZ | |
| get_dihedral(XYZ a, XYZ b, XYZ c, XYZ d) | IMP::core::XYZ | related |
| get_distance(XYZ a, XYZ b) | IMP::core::XYZ | related |
| get_internal_coordinate_keys() (defined in IMP::core::NonRigidMember) | IMP::core::NonRigidMember | static |
| get_internal_coordinates() const | IMP::core::NonRigidMember | |
| get_internal_transformation() const (defined in IMP::core::NonRigidMember) | IMP::core::NonRigidMember | |
| get_model() const | IMP::kernel::Decorator | |
| get_particle() const | IMP::kernel::Decorator | |
| get_particle_index() const (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | |
| get_rigid_body() const (defined in IMP::core::NonRigidMember) | IMP::core::NonRigidMember | |
| get_vector_to(const XYZ &b) const | IMP::core::XYZ | |
| get_x() const (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| get_xyz_keys() | IMP::core::XYZ | static |
| get_y() const (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| get_z() const (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| NonRigidMember() (defined in IMP::core::NonRigidMember) | IMP::core::NonRigidMember | |
| NonRigidMember(Model *m, ParticleIndex id) (defined in IMP::core::NonRigidMember) | IMP::core::NonRigidMember | |
| NonRigidMember(::IMP::kernel::Particle *p) (defined in IMP::core::NonRigidMember) | IMP::core::NonRigidMember | explicit |
| particle_is_instance(Particle *p) | IMP::core::NonRigidMember | static |
| particle_is_instance(Model *m, ParticleIndex p) | IMP::core::NonRigidMember | static |
| set_coordinate(unsigned int i, Float v) | IMP::core::XYZ | |
| set_coordinates(const algebra::Vector3D ¢er) | IMP::core::NonRigidMember | |
| set_coordinates_are_optimized(bool tf) const | IMP::core::XYZ | |
| set_internal_coordinates(const algebra::Vector3D &v) const | IMP::core::NonRigidMember | |
| set_internal_transformation(const algebra::Transformation3D &v) | IMP::core::NonRigidMember | |
| set_x(Float t) (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| set_y(Float t) (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| set_z(Float t) (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| setup_particle(Model *m, ParticleIndex pi, const algebra::Vector3D v=algebra::Vector3D(0, 0, 0)) | IMP::core::XYZ | static |
| setup_particle(Particle *p, const algebra::Vector3D v=algebra::Vector3D(0, 0, 0)) (defined in IMP::core::XYZ) | IMP::core::XYZ | static |
| show(std::ostream &out=std::cout) const (defined in IMP::core::NonRigidMember) | IMP::core::NonRigidMember | |
| Value() (defined in IMP::base::Value) | IMP::base::Value | protected |
| XYZ() (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| XYZ(Model *m, ParticleIndex id) (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| XYZ(::IMP::kernel::Particle *p) (defined in IMP::core::XYZ) | IMP::core::XYZ | explicit |
| ~NonRigidMember() (defined in IMP::core::NonRigidMember) | IMP::core::NonRigidMember | |