| add_score_and_derivatives(ScoreAccumulator sa) const | IMP::kernel::Restraint | |
| clear_caches() | IMP::base::Object | virtual |
| create_current_decomposition() const | IMP::kernel::Restraint | |
| create_decomposition() const | IMP::kernel::Restraint | |
| create_scoring_function(double weight=1.0, double max=NO_MAX) const | IMP::kernel::Restraint | virtual |
| do_add_score_and_derivatives(ScoreAccumulator sa) const | IMP::kernel::Restraint | protectedvirtual |
| do_create_current_decomposition() const | IMP::kernel::Restraint | protectedvirtual |
| do_create_decomposition() const | IMP::kernel::Restraint | protectedvirtual |
| do_get_inputs() const | IMP::container::PairsRestraint | virtual |
| do_get_interactions() const | IMP::kernel::ModelObject | protectedvirtual |
| do_get_outputs() const | IMP::kernel::Restraint | protectedvirtual |
| do_update_dependencies() | IMP::kernel::Restraint | protectedvirtual |
| get_input_containers() const | IMP::kernel::Restraint | |
| get_input_particles() const | IMP::kernel::Restraint | |
| get_inputs() const | IMP::kernel::ModelObject | |
| get_interactions() const | IMP::kernel::ModelObject | |
| get_last_score() const | IMP::kernel::Restraint | virtual |
| get_maximum_score() const (defined in IMP::kernel::Restraint) | IMP::kernel::Restraint | |
| get_model() const (defined in IMP::kernel::ModelObject) | IMP::kernel::ModelObject | |
| get_name() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_outputs() const | IMP::kernel::ModelObject | |
| get_score() const | IMP::kernel::Restraint | |
| get_version_info() const =0 | IMP::base::Object | pure virtual |
| get_was_good() const | IMP::kernel::Restraint | |
| get_weight() const (defined in IMP::kernel::Restraint) | IMP::kernel::Restraint | |
| ModelObject(Model *m, std::string name) (defined in IMP::kernel::ModelObject) | IMP::kernel::ModelObject | |
| ModelObjectsTemp typedef | IMP::kernel::ModelObject | related |
| NonCopyable() (defined in IMP::base::NonCopyable) | IMP::base::NonCopyable | protected |
| Object(std::string name) | IMP::base::Object | protected |
| ObjectsTemp typedef | IMP::base::Object | related |
| PairsRestraint(PairScore *ss, PairContainerAdaptor pc, std::string name="PairsRestraint %1%") | IMP::container::PairsRestraint | |
| ProteinLigandRestraint(Hierarchy protein, Hierarchy ligand, double threshold=std::numeric_limits< double >::max()) (defined in IMP::atom::ProteinLigandRestraint) | IMP::atom::ProteinLigandRestraint | |
| ProteinLigandRestraint(Hierarchy protein, Hierarchy ligand, double threshold, base::TextInput data_file) (defined in IMP::atom::ProteinLigandRestraint) | IMP::atom::ProteinLigandRestraint | |
| ProteinLigandRestraintsTemp typedef | IMP::atom::ProteinLigandRestraint | related |
| Restraint(Model *m, std::string name) | IMP::kernel::Restraint | |
| RestraintsTemp typedef | IMP::kernel::Restraint | related |
| set_check_level(CheckLevel l) | IMP::base::Object | |
| set_log_level(LogLevel l) | IMP::base::Object | |
| set_maximum_score(double s) (defined in IMP::kernel::Restraint) | IMP::kernel::Restraint | |
| set_name(std::string name) (defined in IMP::base::Object) | IMP::base::Object | |
| set_was_used(bool tf) const | IMP::base::Object | |
| set_weight(Float weight) (defined in IMP::kernel::Restraint) | IMP::kernel::Restraint | |
| show(std::ostream &out=std::cout) const (defined in IMP::base::Object) | IMP::base::Object | |
| unprotected_evaluate(IMP::DerivativeAccumulator *accum) const (defined in IMP::container::PairsRestraint) | IMP::container::PairsRestraint | |
| update_dependencies() | IMP::kernel::ModelObject | protectedvirtual |