IMP  2.0.0
The Integrative Modeling Platform
IMP::atom::LennardJones Member List

This is the complete list of members for IMP::atom::LennardJones, including all inherited members.

add_to_derivative(int i, Float v, DerivativeAccumulator &d)IMP::core::XYZ
add_to_derivatives(const algebra::Vector3D &v, DerivativeAccumulator &d)IMP::core::XYZ
add_to_radius_derivative(double v, DerivativeAccumulator &d) (defined in IMP::core::XYZR)IMP::core::XYZR
create_xyzr_particles(Model *m, unsigned int num, Float radius, Float box_side=10)IMP::core::XYZRrelated
decorate_particle(::IMP::kernel::Particle *p) (defined in IMP::atom::LennardJones)IMP::atom::LennardJonesstatic
Decorator(Model *m, ParticleIndex pi) (defined in IMP::kernel::Decorator)IMP::kernel::Decoratorprotected
Decorator(Particle *p) (defined in IMP::kernel::Decorator)IMP::kernel::Decoratorprotected
Decorator() (defined in IMP::kernel::Decorator)IMP::kernel::Decoratorprotected
Decorator(Particle *p)IMP::kernel::Decorator
Decorator()IMP::kernel::Decorator
get_coordinate(int i) const IMP::core::XYZ
get_coordinate_key(unsigned int i) (defined in IMP::core::XYZ)IMP::core::XYZstatic
get_coordinates() const IMP::core::XYZ
get_coordinates_are_optimized() const IMP::core::XYZ
get_derivative(int i) const IMP::core::XYZ
get_derivatives() const IMP::core::XYZ
get_dihedral(XYZ a, XYZ b, XYZ c, XYZ d)IMP::core::XYZrelated
get_distance(XYZR a, XYZR b)IMP::core::XYZRrelated
IMP::core::XYZ::get_distance(XYZ a, XYZ b)IMP::core::XYZrelated
get_enclosing_sphere(const XYZs &v)IMP::core::XYZRrelated
get_model() const IMP::kernel::Decorator
get_particle() const IMP::kernel::Decorator
get_particle_index() const (defined in IMP::kernel::Decorator)IMP::kernel::Decorator
get_radius() const (defined in IMP::core::XYZR)IMP::core::XYZR
get_radius_key()IMP::core::XYZRstatic
get_sphere() const IMP::core::XYZR
get_vector_to(const XYZ &b) const IMP::core::XYZ
get_well_depth() const (defined in IMP::atom::LennardJones)IMP::atom::LennardJones
get_well_depth_key() (defined in IMP::atom::LennardJones)IMP::atom::LennardJonesstatic
get_x() const (defined in IMP::core::XYZ)IMP::core::XYZ
get_xyz_keys()IMP::core::XYZstatic
get_y() const (defined in IMP::core::XYZ)IMP::core::XYZ
get_z() const (defined in IMP::core::XYZ)IMP::core::XYZ
LennardJones() (defined in IMP::atom::LennardJones)IMP::atom::LennardJones
LennardJones(Model *m, ParticleIndex id) (defined in IMP::atom::LennardJones)IMP::atom::LennardJones
LennardJones(::IMP::kernel::Particle *p) (defined in IMP::atom::LennardJones)IMP::atom::LennardJonesexplicit
particle_is_instance(Particle *p)IMP::atom::LennardJonesstatic
particle_is_instance(Model *m, ParticleIndex pi) (defined in IMP::core::XYZ)IMP::core::XYZstatic
set_coordinate(unsigned int i, Float v)IMP::core::XYZ
set_coordinates(const algebra::Vector3D &v)IMP::core::XYZ
set_coordinates_are_optimized(bool tf) const IMP::core::XYZ
set_enclosing_radius(XYZR b, const XYZs &v)IMP::core::XYZRrelated
set_enclosing_sphere(XYZR b, const XYZs &v, double slack=0)IMP::core::XYZRrelated
set_radius(double r) const (defined in IMP::core::XYZR)IMP::core::XYZR
set_sphere(const algebra::Sphere3D &s)IMP::core::XYZR
set_well_depth(Float well_depth) (defined in IMP::atom::LennardJones)IMP::atom::LennardJones
set_x(Float t) (defined in IMP::core::XYZ)IMP::core::XYZ
set_y(Float t) (defined in IMP::core::XYZ)IMP::core::XYZ
set_z(Float t) (defined in IMP::core::XYZ)IMP::core::XYZ
setup_particle(Particle *p, Float well_depth=0)IMP::atom::LennardJonesstatic
IMP::core::XYZR::setup_particle(Particle *p)IMP::core::XYZRstatic
IMP::core::XYZR::setup_particle(Particle *p, const algebra::Sphere3D s)IMP::core::XYZRstatic
IMP::core::XYZR::setup_particle(Model *m, ParticleIndex pi, const algebra::Sphere3D s)IMP::core::XYZRstatic
IMP::core::XYZ::setup_particle(Model *m, ParticleIndex pi, const algebra::Vector3D v=algebra::Vector3D(0, 0, 0))IMP::core::XYZstatic
setup_particle(Particle *p, const algebra::Vector3D v=algebra::Vector3D(0, 0, 0)) (defined in IMP::core::XYZ)IMP::core::XYZstatic
show(std::ostream &out=std::cout) const (defined in IMP::atom::LennardJones)IMP::atom::LennardJones
Value() (defined in IMP::base::Value)IMP::base::Valueprotected
XYZ() (defined in IMP::core::XYZ)IMP::core::XYZ
XYZ(Model *m, ParticleIndex id) (defined in IMP::core::XYZ)IMP::core::XYZ
XYZ(::IMP::kernel::Particle *p) (defined in IMP::core::XYZ)IMP::core::XYZexplicit
XYZR() (defined in IMP::core::XYZR)IMP::core::XYZR
XYZR(Model *m, ParticleIndex id) (defined in IMP::core::XYZR)IMP::core::XYZR
XYZR(::IMP::kernel::Particle *p) (defined in IMP::core::XYZR)IMP::core::XYZRexplicit