IMP  2.0.0
The Integrative Modeling Platform
IMP::atom::CHARMMPatch Member List

This is the complete list of members for IMP::atom::CHARMMPatch, including all inherited members.

add_angle(const CHARMMAngle &bond) (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
add_atom(const CHARMMAtomTopology &atom) (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
add_bond(const CHARMMBond &bond) (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
add_dihedral(const CHARMMDihedral &bond) (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
add_improper(const CHARMMDihedral &bond) (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
add_internal_coordinate(const CHARMMInternalCoordinate &ic) (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
add_removed_atom(std::string name) (defined in IMP::atom::CHARMMPatch)IMP::atom::CHARMMPatch
angles_ (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBaseprotected
apply(CHARMMResidueTopology *res) const IMP::atom::CHARMMPatch
apply(CHARMMResidueTopology *res1, CHARMMResidueTopology *res2) const IMP::atom::CHARMMPatch
atoms_ (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBaseprotected
bonds_ (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBaseprotected
CHARMMPatch(std::string type)IMP::atom::CHARMMPatch
CHARMMPatchesTemp typedefIMP::atom::CHARMMPatchrelated
CHARMMResidueTopologyBase(std::string type) (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBaseprotected
CHARMMResidueTopologyBasesTemp typedefIMP::atom::CHARMMResidueTopologyBaserelated
clear_caches()IMP::base::Objectvirtual
dihedrals_ (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBaseprotected
do_show(std::ostream &out) const (defined in IMP::atom::CHARMMPatch)IMP::atom::CHARMMPatchvirtual
get_angle(unsigned int index) const (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
get_atom(unsigned int i) const (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
get_atom(AtomType type) const (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
get_atom(std::string name) const (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
get_bond(unsigned int index) const (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
get_dihedral(unsigned int index) const (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
get_improper(unsigned int index) const (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
get_internal_coordinate(unsigned int index) const (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
get_name() const (defined in IMP::base::Object)IMP::base::Object
get_number_of_angles() const (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
get_number_of_atoms() const (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
get_number_of_bonds() const (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
get_number_of_dihedrals() const (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
get_number_of_impropers() const (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
get_number_of_internal_coordinates() const (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
get_number_of_removed_atoms() const (defined in IMP::atom::CHARMMPatch)IMP::atom::CHARMMPatch
get_removed_atom(unsigned int i) const (defined in IMP::atom::CHARMMPatch)IMP::atom::CHARMMPatch
get_type() const (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBase
get_version_info() const =0IMP::base::Objectpure virtual
impropers_ (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBaseprotected
internal_coordinates_ (defined in IMP::atom::CHARMMResidueTopologyBase)IMP::atom::CHARMMResidueTopologyBaseprotected
NonCopyable() (defined in IMP::base::NonCopyable)IMP::base::NonCopyableprotected
Object(std::string name)IMP::base::Objectprotected
ObjectsTemp typedefIMP::base::Objectrelated
set_check_level(CheckLevel l)IMP::base::Object
set_log_level(LogLevel l)IMP::base::Object
set_name(std::string name) (defined in IMP::base::Object)IMP::base::Object
set_was_used(bool tf) const IMP::base::Object
show(std::ostream &out=std::cout) const (defined in IMP::base::Object)IMP::base::Object