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2.0.0
The Integrative Modeling Platform
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IMP::atom::CHARMMPatch Member List
This is the complete list of members for
IMP::atom::CHARMMPatch
, including all inherited members.
add_angle
(const CHARMMAngle &bond) (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
add_atom
(const CHARMMAtomTopology &atom) (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
add_bond
(const CHARMMBond &bond) (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
add_dihedral
(const CHARMMDihedral &bond) (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
add_improper
(const CHARMMDihedral &bond) (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
add_internal_coordinate
(const CHARMMInternalCoordinate &ic) (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
add_removed_atom
(std::string name) (defined in
IMP::atom::CHARMMPatch
)
IMP::atom::CHARMMPatch
angles_
(defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
protected
apply
(CHARMMResidueTopology *res) const
IMP::atom::CHARMMPatch
apply
(CHARMMResidueTopology *res1, CHARMMResidueTopology *res2) const
IMP::atom::CHARMMPatch
atoms_
(defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
protected
bonds_
(defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
protected
CHARMMPatch
(std::string type)
IMP::atom::CHARMMPatch
CHARMMPatchesTemp
typedef
IMP::atom::CHARMMPatch
related
CHARMMResidueTopologyBase
(std::string type) (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
protected
CHARMMResidueTopologyBasesTemp
typedef
IMP::atom::CHARMMResidueTopologyBase
related
clear_caches
()
IMP::base::Object
virtual
dihedrals_
(defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
protected
do_show
(std::ostream &out) const (defined in
IMP::atom::CHARMMPatch
)
IMP::atom::CHARMMPatch
virtual
get_angle
(unsigned int index) const (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
get_atom
(unsigned int i) const (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
get_atom
(AtomType type) const (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
get_atom
(std::string name) const (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
get_bond
(unsigned int index) const (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
get_dihedral
(unsigned int index) const (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
get_improper
(unsigned int index) const (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
get_internal_coordinate
(unsigned int index) const (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
get_name
() const (defined in
IMP::base::Object
)
IMP::base::Object
get_number_of_angles
() const (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
get_number_of_atoms
() const (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
get_number_of_bonds
() const (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
get_number_of_dihedrals
() const (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
get_number_of_impropers
() const (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
get_number_of_internal_coordinates
() const (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
get_number_of_removed_atoms
() const (defined in
IMP::atom::CHARMMPatch
)
IMP::atom::CHARMMPatch
get_removed_atom
(unsigned int i) const (defined in
IMP::atom::CHARMMPatch
)
IMP::atom::CHARMMPatch
get_type
() const (defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
get_version_info
() const =0
IMP::base::Object
pure virtual
impropers_
(defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
protected
internal_coordinates_
(defined in
IMP::atom::CHARMMResidueTopologyBase
)
IMP::atom::CHARMMResidueTopologyBase
protected
NonCopyable
() (defined in
IMP::base::NonCopyable
)
IMP::base::NonCopyable
protected
Object
(std::string name)
IMP::base::Object
protected
ObjectsTemp
typedef
IMP::base::Object
related
set_check_level
(CheckLevel l)
IMP::base::Object
set_log_level
(LogLevel l)
IMP::base::Object
set_name
(std::string name) (defined in
IMP::base::Object
)
IMP::base::Object
set_was_used
(bool tf) const
IMP::base::Object
show
(std::ostream &out=std::cout) const (defined in
IMP::base::Object
)
IMP::base::Object