Re: [IMP-dev] Problem compiling IMP trunk on a Mac with Lion

[Davide Baù <>]

Yes, the directory modules/kernel is present.
I have tried to compile the same version on a linux machine. It does not compile either, but with a different error:

> g++ -o build/src/imp_misc_all.os -c -isystem /usr/src/imp/trunk -Wall -Wextra -Wno-deprecated -Winit-self -Wstrict-aliasing=2 -Wcast-align -fno-operator-names -Wmissing-declarations -Wundef -Woverloaded-virtual -O3 -fexpensive-optimizations -ffast-math -ftree-vectorize -ffinite-math-only -fstrict-aliasing -fno-trapping-math -fno-signaling-nans -fno-float-store -Wno-unused -funsafe-loop-optimizations -fno-signed-zeros -freciprocal-math -fassociative-math -fvisibility=hidden -fPIC -DBOOST_ALL_NO_LIB -DIMPMISC_EXPORTS -DGCC_VISIBILITY -Ibuild/include -Ibuild/src build/src/imp_misc_all.cpp
> scons: *** [build/src/imp_restrainer_all.os] Error 1
> /usr/src/imp/trunk/build/include/IMP/saxs/Score.h:30: Warning(401): Nothing known about base class 'RefCounted'. Ignored.
> scons: building terminated because of errors. 



On Oct 4, 2011, at 4:48 PM, Daniel Russel wrote:

> For some reason scons isn't finding most of the module source (at the bottom it thinks there are no modules it can build). Are you sure there is a directory modules/kernel?
> 
> On Oct 4, 2011, at 4:48 AM, Davide Baù wrote:
> 
>> Hi all,
>> 
>> I have a problem trying to compile the latest IMP build (r11272) on a MBP updated to Lion.
>> 
>> I got the latest version of IMP (svn co http://svn.salilab.org/imp/trunk) but I'm not able to compile it (Errors building: tools/imppy.sh).
>> 
>> Does anyone knows if it depends on the IMP version I'm trying to compile?
>> Davide
>> 
>>> scons: *** [tools/imppy.sh] KeyError : 'kernel'
>>> Traceback (most recent call last):
>>> File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/scons-2.0.1/SCons/Action.py", line 1046, in execute
>>>   result = self.execfunction(target=target, source=rsources, env=env)
>>> File "/usr/src/imp/r11272/scons_tools/imppy.py", line 61, in builder_script_file
>>>   if data.get(env).modules['kernel'].external:
>>> KeyError: 'kernel'
>>> scons: building terminated because of errors.
>>> 
>>> 
>>> IMP configuration:
>>> boost               ='yes'
>>> boostlibs           =''
>>> boostversion        ='104601'
>>> boostlibsuffix      ='-mt'
>>> endian              ='little'
>>> boost_programoptions='yes'
>>> boost_programoptionslibs='boost_program_options-mt'
>>> build               ='fast'
>>> prefix              ='/usr'
>>> local               ='True'
>>> pythonpath          ='/usr/src/imp/r11272'
>>> libpath             ='/opt/local/lib'
>>> ldlibpath           ='/usr/src/imp/r11272'
>>> swigpath            ='/usr/src/imp/r11272'
>>> datapath            ='/usr/src/imp/r11272'
>>> cxxcompiler         ='g++'
>>> cxxflags='-isystem /opt/local/include -Os -fno-common -arch i386 -arch x86_64 -Wall -Wextra -Wno-deprecated -Winit-self -Wstrict-aliasing=2 -Wcast-align -fno-operator-names -Wmissing-prototypes -Wundef -Woverloaded-virtual -O3 -fexpensive-optimizations -ffast-math -ftree-vectorize -ffinite-math-only -fstrict-aliasing -fno-trapping-math -fno-signaling-nans -fno-float-store -Wno-unused -funsafe-loop-optimizations'
>>> pythoncxxflags      ='-isystem /opt/local/include -Os -fno-common -arch i386 -arch x86_64 -Wno-deprecated -Winit-self -Wcast-align -fno-operator-names -Wundef -Woverloaded-virtual -fexpensive-optimizations -ffast-math -ftree-vectorize -ffinite-math-only -fstrict-aliasing -fno-trapping-math -fno-signaling-nans -fno-float-store -Wno-unused -funsafe-loop-optimizations'
>>> bincxxflags='-isystem /opt/local/include -Os -fno-common -arch i386 -arch x86_64 -Wall -Wextra -Wno-deprecated -Winit-self -Wstrict-aliasing=2 -Wcast-align -fno-operator-names -Wundef -Woverloaded-virtual -O3 -fexpensive-optimizations -ffast-math -ftree-vectorize -ffinite-math-only -fstrict-aliasing -fno-trapping-math -fno-signaling-nans -fno-float-store -Wno-unused -funsafe-loop-optimizations'
>>> shliblinkflags      =' -dynamiclib -headerpad_max_install_names'
>>> arliblinkflags      =''
>>> binlinkflags        ='-headerpad_max_install_names'
>>> pythonlinkflags     =' -bundle -bundle -flat_namespace -undefined suppress -headerpad_max_install_names'
>>> rpath               ='True'
>>> static              ='False'
>>> pythonsosuffix      ='.so'
>>> pkgconfig           ='True'
>>> path                ="/opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin:/opt/local/bin:/usr/local/git/bin:/Users/dbau/Work/scripts:/Users/dbau/Work/scripts/ucsf:/Users/dbau/Work/scripts/tools:/Users/dbau/Work/scripts/IMP:/Users/dbau/Scripts:/opt/local/bin:/usr/bin:/bin:/usr/local/git/bin:/usr/src/android-sdk-mac_x86/platforms:/usr/src/android-sdk-mac_x86/tools:/usr/src/android-sdk-mac_x86/platform-tools"
>>> python              ="python"
>>> 
>>> 
>>> Enabled dependencies:  Boost, Boost.ProgramOptions
>>> 
>>> Disabled modules: em, core, container, saxs, multifit, modules, example_system_local, rmf, atom, em2d
>>> 
>>> Disabled applications: rmf_tools, ligand_score, saxs_tools, Groel, nup84, multifit, em_tools, example_system, rnapii, foxs
>>> 
>>> Errors building:
>>> tools/imppy.sh
>> 
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> 
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