Re: [IMP-dev] Problem compiling IMP trunk on a Mac with Lion

[Daniel Russel <>]

For some reason scons isn't finding most of the module source (at the bottom it thinks there are no modules it can build). Are you sure there is a directory modules/kernel?

On Oct 4, 2011, at 4:48 AM, Davide Baù wrote:

> Hi all,
> 
> I have a problem trying to compile the latest IMP build (r11272) on a MBP updated to Lion.
> 
> I got the latest version of IMP (svn co http://svn.salilab.org/imp/trunk) but I'm not able to compile it (Errors building: tools/imppy.sh).
> 
> Does anyone knows if it depends on the IMP version I'm trying to compile?
> Davide
> 
>> scons: *** [tools/imppy.sh] KeyError : 'kernel'
>> Traceback (most recent call last):
>>  File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/scons-2.0.1/SCons/Action.py", line 1046, in execute
>>    result = self.execfunction(target=target, source=rsources, env=env)
>>  File "/usr/src/imp/r11272/scons_tools/imppy.py", line 61, in builder_script_file
>>    if data.get(env).modules['kernel'].external:
>> KeyError: 'kernel'
>> scons: building terminated because of errors.
>> 
>> 
>> IMP configuration:
>> boost               ='yes'
>> boostlibs           =''
>> boostversion        ='104601'
>> boostlibsuffix      ='-mt'
>> endian              ='little'
>> boost_programoptions='yes'
>> boost_programoptionslibs='boost_program_options-mt'
>> build               ='fast'
>> prefix              ='/usr'
>> local               ='True'
>> pythonpath          ='/usr/src/imp/r11272'
>> libpath             ='/opt/local/lib'
>> ldlibpath           ='/usr/src/imp/r11272'
>> swigpath            ='/usr/src/imp/r11272'
>> datapath            ='/usr/src/imp/r11272'
>> cxxcompiler         ='g++'
>> cxxflags='-isystem /opt/local/include -Os -fno-common -arch i386 -arch x86_64 -Wall -Wextra -Wno-deprecated -Winit-self -Wstrict-aliasing=2 -Wcast-align -fno-operator-names -Wmissing-prototypes -Wundef -Woverloaded-virtual -O3 -fexpensive-optimizations -ffast-math -ftree-vectorize -ffinite-math-only -fstrict-aliasing -fno-trapping-math -fno-signaling-nans -fno-float-store -Wno-unused -funsafe-loop-optimizations'
>> pythoncxxflags      ='-isystem /opt/local/include -Os -fno-common -arch i386 -arch x86_64 -Wno-deprecated -Winit-self -Wcast-align -fno-operator-names -Wundef -Woverloaded-virtual -fexpensive-optimizations -ffast-math -ftree-vectorize -ffinite-math-only -fstrict-aliasing -fno-trapping-math -fno-signaling-nans -fno-float-store -Wno-unused -funsafe-loop-optimizations'
>> bincxxflags='-isystem /opt/local/include -Os -fno-common -arch i386 -arch x86_64 -Wall -Wextra -Wno-deprecated -Winit-self -Wstrict-aliasing=2 -Wcast-align -fno-operator-names -Wundef -Woverloaded-virtual -O3 -fexpensive-optimizations -ffast-math -ftree-vectorize -ffinite-math-only -fstrict-aliasing -fno-trapping-math -fno-signaling-nans -fno-float-store -Wno-unused -funsafe-loop-optimizations'
>> shliblinkflags      =' -dynamiclib -headerpad_max_install_names'
>> arliblinkflags      =''
>> binlinkflags        ='-headerpad_max_install_names'
>> pythonlinkflags     =' -bundle -bundle -flat_namespace -undefined suppress -headerpad_max_install_names'
>> rpath               ='True'
>> static              ='False'
>> pythonsosuffix      ='.so'
>> pkgconfig           ='True'
>> path                ="/opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin:/opt/local/bin:/usr/local/git/bin:/Users/dbau/Work/scripts:/Users/dbau/Work/scripts/ucsf:/Users/dbau/Work/scripts/tools:/Users/dbau/Work/scripts/IMP:/Users/dbau/Scripts:/opt/local/bin:/usr/bin:/bin:/usr/local/git/bin:/usr/src/android-sdk-mac_x86/platforms:/usr/src/android-sdk-mac_x86/tools:/usr/src/android-sdk-mac_x86/platform-tools"
>> python              ="python"
>> 
>> 
>> Enabled dependencies:  Boost, Boost.ProgramOptions
>> 
>> Disabled modules: em, core, container, saxs, multifit, modules, example_system_local, rmf, atom, em2d
>> 
>> Disabled applications: rmf_tools, ligand_score, saxs_tools, Groel, nup84, multifit, em_tools, example_system, rnapii, foxs
>> 
>> Errors building:
>>  tools/imppy.sh
> 
> _______________________________________________
> IMP-dev mailing list
> 
> https://salilab.org/mailman/listinfo/imp-dev