RNPII - Thursday 3pm, as originally scheduled :)
On Oct 25, 2010, at 4:48 PM, Daniel Russel wrote:
Recent changes:
• IMP::atom::Selection was added to allow specification of parts of
IMP::atom::Hierarchy using biological sorts of names. A few
functions to create restraints from them were added too.
• a new example was added in the kernel to show IMP used on a
biological system
• IMP::display::PymolWriter now supports adding labels to things
• IMP::display::PairRestraintGeometry and
IMP::display::ConnectivityRestraintGeometry were added to aid in
visualizing those restraints.
• IMP::bullet was added with an optimizer to use hard body physics
to resolve local collisions.
• IMP::atom::setup_as_rigid_body() has been deprecated and replaced
by IMP::atom::create_rigid_body(). The latter creates the rigid body
as a separtate particle so that the molecular hierarchy doesn't have
to worry about having its bounding sphere large enough to enclose
all the members.
• IMP::core::KClosePairsPairScore was added to have count based
cutoffs for close pair scoring.
• IMP::algebra::get_surface_area_and_volume() was added to compute
the two numbers for a set of balls
• Two examples were added to the kernel, Nup84 CG and Nup84 RB
which illustrate the usage of many aspects of IMP.
As a reminder, Keren is discussing the RNAPII example tomorrow at 1.
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