smallest first: bonddecoratorlistscorestate returns and prints the number of bonds
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number_of_bonds_in_bd
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define types for pairs in base_types (a later patch exports them to python)
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define_pairs
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I forgot to have the spheres list update the bonded lists
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forgot_update
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Finally, a pairlist restraint and minor tweaks to list restraint since I was mimicking it
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pairlist
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